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IVF0021988 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0021988
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Genome locationchr04:21920104..21920733
RNA-Seq ExpressionIVF0021988
SyntenyIVF0021988
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016020 - membrane (cellular component)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047411.1 gag/pol protein [Cucumis melo var. makuwa]7.81e-2758.33Show/hide
Query:  MRARMPRAQFFHRGIKSGPPTVSLFC----IGHRFLSFGTRM-RTLVYTLGIVPHPFSQVISRKASSLEGDLRCNPKRSKRWPMPNEWRMLVRC-QKPMR
        MRARMP  QFFHRG+K+ P TVSLFC    IG    +FGT   RT VY LGIVPH F Q I R ASSLEG+LRC+PKRSKRWPM  +         +   
Subjt:  MRARMPRAQFFHRGIKSGPPTVSLFC----IGHRFLSFGTRM-RTLVYTLGIVPHPFSQVISRKASSLEGDLRCNPKRSKRWPMPNEWRMLVRC-QKPMR

Query:  MHFGEGKELSSRTSGVCPRK
        M+F +G  LS RTS VCPRK
Subjt:  MHFGEGKELSSRTSGVCPRK

KAA0051945.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]5.22e-2547.97Show/hide
Query:  MHFGEGKELSSRTSGVCPRKLRARMPQIQFFHCGVKSDPTTVSMFCIGHKCFELRDSYSEDFSLHSWHLPSLISPRTRSGSELIGGRTKVQP--------
        M F EG  LSS TS V P+K++ RMP  +F +   KS P+TV +F IGHKCFEL DSY E+F+LHSWH PS I  + RSGSEL G + +  P        
Subjt:  MHFGEGKELSSRTSGVCPRKLRARMPQIQFFHCGVKSDPTTVSMFCIGHKCFELRDSYSEDFSLHSWHLPSLISPRTRSGSELIGGRTKVQP--------

Query:  ---GTIEKME----NALPTSGKC
           G++ KM+    N L  SG C
Subjt:  ---GTIEKME----NALPTSGKC

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]5.78e-3657.45Show/hide
Query:  MPRAQFFHRGIKSGPPTVSLFCIGHRFL--SFGTR-MRTLVYTLGIVPHPFSQVISRKASSLEGDLRCNPKRSKRWPMP-NEWRMLVRCQKPMRMHFGEG
        MP+ QFFHRG+KSG  TVSLFC+       SF T  +R+  Y   IVPH FSQ I ++ S L G+LRCN +R KRW M       LV CQKP++MHF +G
Subjt:  MPRAQFFHRGIKSGPPTVSLFCIGHRFL--SFGTR-MRTLVYTLGIVPHPFSQVISRKASSLEGDLRCNPKRSKRWPMP-NEWRMLVRCQKPMRMHFGEG

Query:  KELSSRTSGVCPRKLRARMPQIQFFHCGVKSDPTTVSMFCI
         ELSSRTSGV PRK++ARM Q QFFH G+KS P TVS+FC+
Subjt:  KELSSRTSGVCPRKLRARMPQIQFFHCGVKSDPTTVSMFCI

KAA0065520.1 retrotransposon protein, putative, Ty3-gypsy subclass, expressed [Cucumis melo var. makuwa]2.68e-3946.86Show/hide
Query:  MRARMPRAQFFHRGIKSGPPTVSLFCIGHRFL--SFGTR-MRTLVYTLGIVPHPFSQVISRKASSLEGDLRCNPKRSKRWPMPNEWRMLVRCQKPMRMHF
        +R RMP  QFF+ G+K+GP  VS FC+       SF T  +RT VY  GIV H FSQ I R+ASS +G+ RCNPKRSK WP+  +     R    M  H 
Subjt:  MRARMPRAQFFHRGIKSGPPTVSLFCIGHRFL--SFGTR-MRTLVYTLGIVPHPFSQVISRKASSLEGDLRCNPKRSKRWPMPNEWRMLVRCQKPMRMHF

Query:  GEGKELSSRTSGVCPRKLRA--RMPQIQFFHCGVK-SDPTTVSMFCIGHKCFELRDSYSEDFSLHSWHLPSLISPRTRSGSELIGGRTKVQPGTIEKMEN
         +  + +   +  C  +  A    P   F     K S    + + C+GHK FEL+DSYSEDFSLHSW  PS +  + R+GS+L+ GRTKVQ  TIEKM N
Subjt:  GEGKELSSRTSGVCPRKLRA--RMPQIQFFHCGVK-SDPTTVSMFCIGHKCFELRDSYSEDFSLHSWHLPSLISPRTRSGSELIGGRTKVQPGTIEKMEN

Query:  ALPTSGK
         LPTSGK
Subjt:  ALPTSGK

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]7.55e-2448.37Show/hide
Query:  MRARMPRAQFFHRGIKSGPPTVSLFCIGHRFL--SFGT-RMRTLVYTLGIVPHPFSQVISRKASSLEGDLR------CNPKRSKRWP--MPNEWRMLV-R
        +RARMPR  FFH  +KS P TVSLFC+       SF T   RT VY  GIVPHPFSQ I  + SSLEG+L       C PK S   P  +P+ +   + R
Subjt:  MRARMPRAQFFHRGIKSGPPTVSLFCIGHRFL--SFGT-RMRTLVYTLGIVPHPFSQVISRKASSLEGDLR------CNPKRSKRWP--MPNEWRMLV-R

Query:  CQKPMRMHFGEGKELSSRTSGVCPRKLRARMPQIQFFHCGVKSDPTTVSMFCI
            +     +G  LSSR S V PRK+RARMP+ QFFH  +KS P +VS+F I
Subjt:  CQKPMRMHFGEGKELSSRTSGVCPRKLRARMPQIQFFHCGVKSDPTTVSMFCI

TrEMBL top hitse value%identityAlignment
A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein7.5e-2246.15Show/hide
Query:  RARMPRAQFFHRGIKSGPPTVSLFC---IGHRFLSFGTRMRTLVYTLGIVPHPFSQVISRKASSLEGDLRCNPKRSKRWPM-PNEWRMLVRCQKPMRMHF
        RARMPR+QF   G KS  PTVS  C   + +  +      RT  +T G++P  FS+ I ++ASSLEG+L CNPKRSKRW M P         +  ++   
Subjt:  RARMPRAQFFHRGIKSGPPTVSLFC---IGHRFLSFGTRMRTLVYTLGIVPHPFSQVISRKASSLEGDLRCNPKRSKRWPM-PNEWRMLVRCQKPMRMHF

Query:  GEGKELSSRTSGVCPRKLRARMPQIQFFHCGVKSDPTTVSMFC
         EG  LSSRT    P+K RARMP+ QF   G KS P TVS  C
Subjt:  GEGKELSSRTSGVCPRKLRARMPQIQFFHCGVKSDPTTVSMFC

A0A5A7VEB1 Retrotransposon protein, putative, Ty3-gypsy subclass, expressed3.5e-3546.86Show/hide
Query:  MRARMPRAQFFHRGIKSGPPTVSLFCI--GHRFLSFGTR-MRTLVYTLGIVPHPFSQVISRKASSLEGDLRCNPKRSKRWPMPNEWRMLVRCQKPMRMHF
        +R RMP  QFF+ G+K+GP  VS FC+       SF T  +RT VY  GIV H FSQ I R+ASS +G+ RCNPKRSK WP+  +     R    M  H 
Subjt:  MRARMPRAQFFHRGIKSGPPTVSLFCI--GHRFLSFGTR-MRTLVYTLGIVPHPFSQVISRKASSLEGDLRCNPKRSKRWPMPNEWRMLVRCQKPMRMHF

Query:  GEGKELSSRTSGVCPRKLRA--RMPQIQFFHCGVK-SDPTTVSMFCIGHKCFELRDSYSEDFSLHSWHLPSLISPRTRSGSELIGGRTKVQPGTIEKMEN
         +  + +   +  C  +  A    P   F     K S    + + C+GHK FEL+DSYSEDFSLHSW  PS +  + R+GS+L+ GRTKVQ  TIEKM N
Subjt:  GEGKELSSRTSGVCPRKLRA--RMPQIQFFHCGVK-SDPTTVSMFCIGHKCFELRDSYSEDFSLHSWHLPSLISPRTRSGSELIGGRTKVQPGTIEKMEN

Query:  ALPTSGK
         LPTSGK
Subjt:  ALPTSGK

A0A5A7VGQ5 Uncharacterized protein9.5e-3357.45Show/hide
Query:  MPRAQFFHRGIKSGPPTVSLFCI--GHRFLSFGTR-MRTLVYTLGIVPHPFSQVISRKASSLEGDLRCNPKRSKRWPMP-NEWRMLVRCQKPMRMHFGEG
        MP+ QFFHRG+KSG  TVSLFC+       SF T  +R+  Y   IVPH FSQ I ++ S L G+LRCN +R KRW M       LV CQKP++MHF +G
Subjt:  MPRAQFFHRGIKSGPPTVSLFCI--GHRFLSFGTR-MRTLVYTLGIVPHPFSQVISRKASSLEGDLRCNPKRSKRWPMP-NEWRMLVRCQKPMRMHFGEG

Query:  KELSSRTSGVCPRKLRARMPQIQFFHCGVKSDPTTVSMFCI
         ELSSRTSGV PRK++ARM Q QFFH G+KS P TVS+FC+
Subjt:  KELSSRTSGVCPRKLRARMPQIQFFHCGVKSDPTTVSMFCI

A0A5D3BG85 Uncharacterized protein4.4e-2248.37Show/hide
Query:  MRARMPRAQFFHRGIKSGPPTVSLFCIGH--RFLSFGT-RMRTLVYTLGIVPHPFSQVISRKASSLEGDL------RCNPKRSKRWP--MPNEWRM-LVR
        +RARMPR  FFH  +KS P TVSLFC+       SF T   RT VY  GIVPHPFSQ I  + SSLEG+L       C PK S   P  +P+ +   + R
Subjt:  MRARMPRAQFFHRGIKSGPPTVSLFCIGH--RFLSFGT-RMRTLVYTLGIVPHPFSQVISRKASSLEGDL------RCNPKRSKRWP--MPNEWRM-LVR

Query:  CQKPMRMHFGEGKELSSRTSGVCPRKLRARMPQIQFFHCGVKSDPTTVSMFCI
            +     +G  LSSR S V PRK+RARMP+ QFFH  +KS P +VS+F I
Subjt:  CQKPMRMHFGEGKELSSRTSGVCPRKLRARMPQIQFFHCGVKSDPTTVSMFCI

A0A5D3CUK8 Gag/pol protein3.6e-2457.63Show/hide
Query:  MRARMPRAQFFHRGIKSGPPTVSLFCIGHRF--LSFGTRM-RTLVYTLGIVPHPFSQVISRKASSLEGDLRCNPKRSKRWPMPNEWRMLVR-CQKPMRMH
        MRARMP  QFFHRG+K+ P TVSLFC+       +FGT   RT VY LGIVPH F Q I R ASSLEG+LRC+PKRSKRWPM  +         +   M+
Subjt:  MRARMPRAQFFHRGIKSGPPTVSLFCIGHRF--LSFGTRM-RTLVYTLGIVPHPFSQVISRKASSLEGDLRCNPKRSKRWPMPNEWRMLVR-CQKPMRMH

Query:  FGEGKELSSRTSGVCPRK
        F +G  LS RTS VCPRK
Subjt:  FGEGKELSSRTSGVCPRK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGAGCGAGAATGCCCCGAGCTCAGTTTTTCCATCGCGGGATAAAAAGCGGTCCTCCAACGGTTTCTTTGTTTTGTATTGGTCATAGGTTTTTGAGCTTTGGTACTCG
TATGAGAACTTTAGTATACACTCTTGGTATCGTCCCTCACCCATTTTCCCAAGTAATAAGTCGGAAAGCGAGCTCGTTGGAGGGAGATCTAAGGTGCAACCCGAAACGAT
CGAAACGATGGCCAATGCCCAACGAGTGGCGAATGCTTGTCCGGTGTCAGAAACCAATGAGAATGCATTTCGGTGAAGGAAAGGAGCTAAGCTCAAGGACTTCTGGTGTT
TGTCCTAGGAAATTGCGAGCGAGAATGCCTCAGATTCAGTTTTTCCATTGCGGGGTAAAAAGCGATCCTACAACGGTTTCTATGTTTTGTATTGGTCATAAATGCTTCGA
GCTTCGAGACTCGTACTCTGAGGACTTCAGTCTACACTCCTGGCATCTTCCCTCACTCATTTCCCCTAGGACTAGGTCGGGAAGCGAGCTCATTGGAGGGAGAACTAAGG
TGCAACCCGGAACGATCGAAAAGATGGAAAATGCTCTCCCAACTAGTGGCAAATGCTCGTCCGGTGTTAGAAACCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGCGAGCGAGAATGCCCCGAGCTCAGTTTTTCCATCGCGGGATAAAAAGCGGTCCTCCAACGGTTTCTTTGTTTTGTATTGGTCATAGGTTTTTGAGCTTTGGTACTCG
TATGAGAACTTTAGTATACACTCTTGGTATCGTCCCTCACCCATTTTCCCAAGTAATAAGTCGGAAAGCGAGCTCGTTGGAGGGAGATCTAAGGTGCAACCCGAAACGAT
CGAAACGATGGCCAATGCCCAACGAGTGGCGAATGCTTGTCCGGTGTCAGAAACCAATGAGAATGCATTTCGGTGAAGGAAAGGAGCTAAGCTCAAGGACTTCTGGTGTT
TGTCCTAGGAAATTGCGAGCGAGAATGCCTCAGATTCAGTTTTTCCATTGCGGGGTAAAAAGCGATCCTACAACGGTTTCTATGTTTTGTATTGGTCATAAATGCTTCGA
GCTTCGAGACTCGTACTCTGAGGACTTCAGTCTACACTCCTGGCATCTTCCCTCACTCATTTCCCCTAGGACTAGGTCGGGAAGCGAGCTCATTGGAGGGAGAACTAAGG
TGCAACCCGGAACGATCGAAAAGATGGAAAATGCTCTCCCAACTAGTGGCAAATGCTCGTCCGGTGTTAGAAACCAATGA
Protein sequenceShow/hide protein sequence
MRARMPRAQFFHRGIKSGPPTVSLFCIGHRFLSFGTRMRTLVYTLGIVPHPFSQVISRKASSLEGDLRCNPKRSKRWPMPNEWRMLVRCQKPMRMHFGEGKELSSRTSGV
CPRKLRARMPQIQFFHCGVKSDPTTVSMFCIGHKCFELRDSYSEDFSLHSWHLPSLISPRTRSGSELIGGRTKVQPGTIEKMENALPTSGKCSSGVRNQ