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IVF0022028 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0022028
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionSm domain-containing protein
Genome locationchr12:19697730..19699908
RNA-Seq ExpressionIVF0022028
SyntenyIVF0022028
Gene Ontology termsGO:0031417 - NatC complex (cellular component)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR034110 - LSM domain containing 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008444477.1 PREDICTED: uncharacterized protein LOC103487784 [Cucumis melo]4.20e-74100Show/hide
Query:  MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

XP_011649337.1 uncharacterized protein LOC101206200 [Cucumis sativus]1.93e-7097.32Show/hide
Query:  MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGGSMVQDGSN ESN ESLD IGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

XP_022927243.1 uncharacterized protein LOC111434149 [Cucurbita moschata]1.78e-6691.96Show/hide
Query:  MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGGSMVQ G N ESN +SLD +GKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

XP_023520042.1 uncharacterized protein LOC111783348 [Cucurbita pepo subsp. pepo]3.08e-6792.86Show/hide
Query:  MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGGSMVQ GSN ESN +SLD +GKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

XP_038893823.1 uncharacterized protein LOC120082644 [Benincasa hispida]2.53e-6691.07Show/hide
Query:  MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQES GSMVQDGSN ESN ESLD +GKVR+LLFRRMLIGIKDGRFFLG+FYCIDKQGNIILQDAVEYRSTR SSPSPMEQRCLGLILIPNSCRVSCH+D
Subjt:  MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDE+LALLSV
Subjt:  STIDEQLALLSV

TrEMBL top hitse value%identityAlignment
A0A0A0LSZ5 Sm domain-containing protein2.6e-5397.32Show/hide
Query:  MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGGSMVQDGSN ESN ESLD IGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

A0A1S3BAH4 uncharacterized protein LOC1034877844.3e-56100Show/hide
Query:  MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

A0A5D3DAS2 Small nuclear ribonucleoprotein family protein isoform 24.3e-56100Show/hide
Query:  MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

A0A6J1EKG3 uncharacterized protein LOC1114341492.7e-5091.96Show/hide
Query:  MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGGSMVQ G N ESN +SLD +GKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

A0A6J1KMW6 uncharacterized protein LOC1114956142.3e-4990.18Show/hide
Query:  MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        M+QESGGSMVQ GSN ESN +SLD +GKVRKLLFRRML+GIKDGRFFLG+FYC+DKQGNIILQDAVEYRST RSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

SwissProt top hitse value%identityAlignment
A2BIG9 N-alpha-acetyltransferase 38, NatC auxiliary subunit7.4e-0539.19Show/hide
Query:  KVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDS
        K+  LL + M I + DGR  +G F C D+  N+IL  A E+  +   S S  E R LGL +IP    VS  V++
Subjt:  KVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDS

A4IGZ4 N-alpha-acetyltransferase 38, NatC auxiliary subunit3.3e-0535.35Show/hide
Query:  QESGGSMVQDGSNFESNSESLDCI-GKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        +E+G S        +S++E+ D    K+  LL R M I + DGR  +G F C D+  N+IL  A E+     S P   E R LGL ++P    VS  V+
Subjt:  QESGGSMVQDGSNFESNSESLDCI-GKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Q55A45 Small nuclear ribonucleoprotein-associated protein B3.0e-0634.94Show/hide
Query:  KVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQ-RCLGLILIPNSCRVSCHVDSTIDEQLAL
        K+ + +  RM + I+DGR  +G F   DK  N+++ DA E+R  R+      E+ R LG+ILI     VS  V++   E+  L
Subjt:  KVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQ-RCLGLILIPNSCRVSCHVDSTIDEQLAL

Q6GQ67 N-alpha-acetyltransferase 38-A, NatC auxiliary subunit1.9e-0536.36Show/hide
Query:  QESGGSMVQDGSNFESNSESLDCI-GKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        +E+G S     S  +S++E  D    K+  LL R M I + DGR  +G F C D+  N+IL  A E+     S P   E R LGL ++P    VS  V+
Subjt:  QESGGSMVQDGSNFESNSESLDCI-GKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Q6NU60 N-alpha-acetyltransferase 38-B, NatC auxiliary subunit3.7e-0438.36Show/hide
Query:  KVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        K+  LL R M I + DGR  +G F C D+  N+IL  A E+      S    E R LGL ++P    VS  V+
Subjt:  KVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Arabidopsis top hitse value%identityAlignment
AT4G18372.1 Small nuclear ribonucleoprotein family protein4.0e-3874.74Show/hide
Query:  SNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
        S     D I ++RKLLFR+ML+GIKDGRFFLGNF+CIDKQGNIILQD VEYRS RRSSPSP EQRCLG+ILIP+SCR SCHVD +IDEQL+L+ +
Subjt:  SNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACAAGAATCAGGAGGATCCATGGTTCAGGATGGGAGCAATTTTGAGTCTAACTCAGAGAGTTTAGATTGCATAGGAAAGGTGAGAAAGCTGCTGTTTCGTCGAAT
GCTCATAGGTATTAAAGATGGAAGGTTTTTCTTGGGCAACTTTTACTGCATTGACAAGCAAGGAAATATCATCCTTCAAGATGCAGTAGAGTATCGTAGCACTCGGCGTA
GCTCACCTTCTCCGATGGAACAACGGTGCCTTGGTCTTATTCTTATACCCAACTCTTGCCGTGTATCTTGTCATGTAGATAGTACCATCGATGAACAATTGGCATTGCTA
TCAGTTTAG
mRNA sequenceShow/hide mRNA sequence
AATCATTATTTTATTTATTTAGGGGATGTTACTCCAACACTCTCTCTTTCATCCACGAGAAGCCAAGAATCACAATCGGCTCCCAAGTTCGCCTCTGCTACGCCGTCTAC
CACCCTCTCTATCCTTCTGTAACCCCTGGATCAGTTGAAGTAACCATAGATGGAACAAGAATCAGGAGGATCCATGGTTCAGGATGGGAGCAATTTTGAGTCTAACTCAG
AGAGTTTAGATTGCATAGGAAAGGTGAGAAAGCTGCTGTTTCGTCGAATGCTCATAGGTATTAAAGATGGAAGGTTTTTCTTGGGCAACTTTTACTGCATTGACAAGCAA
GGAAATATCATCCTTCAAGATGCAGTAGAGTATCGTAGCACTCGGCGTAGCTCACCTTCTCCGATGGAACAACGGTGCCTTGGTCTTATTCTTATACCCAACTCTTGCCG
TGTATCTTGTCATGTAGATAGTACCATCGATGAACAATTGGCATTGCTATCAGTTTAGCAAATATAAGATCAAGCCTGAGATTAAGAGGGGATGAAAAAATCTGCACGCT
TTTTTGATGAATTTGACTGTTTCTATTGTTACAGAAAAATCCTAAAACAATGTGATGTTTTTAGTGGAATTATGGATTAGGAAATACGATTTGTTTCTCTTATGGGTAAT
CTTACACACAATATATTGTCGCTTTCTTTATTAAGTTTGAAGAGTGCATGCAAGTAGGAGGACCTTGAAAAGATTATGGAAGAAACCTGGAGGCTTGAGAGAGATTGTTT
TTAG
Protein sequenceShow/hide protein sequence
MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALL
SV