CuGenDBv2

Gene ID	IVF0022042
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	F-box protein SKIP24 isoform X1
Genome location	chr08:12158857..12162998
RNA-Seq Expression	IVF0022042
Synteny	IVF0022042
Gene Ontology terms	GO:0005634 - nucleus (cellular component) GO:0005886 - plasma membrane (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR036047 - F-box-like domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0043654.1 F-box protein SKIP24 isoform X1 [Cucumis melo var. makuwa]

4.76e-114

100

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Query:  ILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSSSFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEE
        ILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSSSFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEE
Subjt:  ILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSSSFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEE

Query:  RLIEETSKCTTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQIAIFQKAL
        RLIEETSKCTTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQIAIFQKAL
Subjt:  RLIEETSKCTTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQIAIFQKAL

XP_008455770.1 PREDICTED: F-box protein SKIP24 isoform X3 [Cucumis melo]

7.27e-116

100

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Query:  ILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSSSFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEE
        ILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSSSFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEE
Subjt:  ILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSSSFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEE

Query:  RLIEETSKCTTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQIAIFQKAL
        RLIEETSKCTTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQIAIFQKAL
Subjt:  RLIEETSKCTTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQIAIFQKAL

XP_016901822.1 PREDICTED: F-box protein SKIP24 isoform X1 [Cucumis melo]

8.96e-116

100

Show/hide

Query:  ILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSSSFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEE
        ILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSSSFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEE
Subjt:  ILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSSSFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEE

Query:  RLIEETSKCTTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQIAIFQKAL
        RLIEETSKCTTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQIAIFQKAL
Subjt:  RLIEETSKCTTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQIAIFQKAL

XP_016901824.1 PREDICTED: F-box protein SKIP24 isoform X2 [Cucumis melo]

1.86e-109

97.25

Show/hide

Query:  ILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSSSFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEE
        ILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSSSFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEE
Subjt:  ILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSSSFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEE

Query:  RLIEETSKCTTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQIAIFQKAL
        RLIEETSKCTTTLTELSNLRTVR     EATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQIAIFQKAL
Subjt:  RLIEETSKCTTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQIAIFQKAL

XP_016901825.1 PREDICTED: F-box protein SKIP24 isoform X4 [Cucumis melo]

6.54e-116

100

Show/hide

Query:  ILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSSSFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEE
        ILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSSSFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEE
Subjt:  ILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSSSFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEE

Query:  RLIEETSKCTTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQIAIFQKAL
        RLIEETSKCTTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQIAIFQKAL
Subjt:  RLIEETSKCTTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQIAIFQKAL

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C1S8 F-box protein SKIP24 isoform X3

8.9e-90

100

Show/hide

Query:  ILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSSSFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEE
        ILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSSSFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEE
Subjt:  ILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSSSFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEE

Query:  RLIEETSKCTTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQIAIFQKAL
        RLIEETSKCTTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQIAIFQKAL
Subjt:  RLIEETSKCTTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQIAIFQKAL

A0A1S4E0Q4 F-box protein SKIP24 isoform X1

8.9e-90

100

Show/hide

Query:  ILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSSSFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEE
        ILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSSSFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEE
Subjt:  ILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSSSFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEE

Query:  RLIEETSKCTTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQIAIFQKAL
        RLIEETSKCTTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQIAIFQKAL
Subjt:  RLIEETSKCTTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQIAIFQKAL

A0A1S4E1G0 F-box protein SKIP24 isoform X4

8.9e-90

100

Show/hide

Query:  ILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSSSFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEE
        ILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSSSFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEE
Subjt:  ILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSSSFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEE

Query:  RLIEETSKCTTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQIAIFQKAL
        RLIEETSKCTTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQIAIFQKAL
Subjt:  RLIEETSKCTTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQIAIFQKAL

A0A5A7TK06 F-box protein SKIP24 isoform X1

8.9e-90

100

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Query:  ILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSSSFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEE
        ILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSSSFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEE
Subjt:  ILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSSSFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEE

Query:  RLIEETSKCTTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQIAIFQKAL
        RLIEETSKCTTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQIAIFQKAL
Subjt:  RLIEETSKCTTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQIAIFQKAL

A0A5D3CCI3 F-box protein SKIP24 isoform X2

6.6e-85

97.25

Show/hide

Query:  ILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSSSFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEE
        ILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSSSFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEE
Subjt:  ILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSSSFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEE

Query:  RLIEETSKCTTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQIAIFQKAL
        RLIEETSKCTTTLTELSNLRTV     REATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQIAIFQKAL
Subjt:  RLIEETSKCTTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQIAIFQKAL

SwissProt top hits

e value

%identity

Alignment

Q9CAZ0 F-box protein SKIP24

1.6e-40

54.1

Show/hide

Query:  ILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSS-SSSFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLE
        IL+IGVK+S  +YKDLCC+SISS RL RLS  DSLW  LL  D+P+   S+  SS S +K +Y  R ER++ RK AAH RA+LRKES+I+E  RR+ +LE
Subjt:  ILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSS-SSSFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLE

Query:  ERLIEETSKCTTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQIAIFQKAL
         RL +E  +  ++  + S+L      ++R+A+VALNVWQPEV+R RQKQ+VEQ +V V+ RLR L+ME+KLCKQQI    +AL
Subjt:  ERLIEETSKCTTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQIAIFQKAL

Arabidopsis top hits

e value

%identity

Alignment

AT1G08710.1 F-box family protein

1.2e-41

54.1

Show/hide

Query:  ILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSS-SSSFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLE
        IL+IGVK+S  +YKDLCC+SISS RL RLS  DSLW  LL  D+P+   S+  SS S +K +Y  R ER++ RK AAH RA+LRKES+I+E  RR+ +LE
Subjt:  ILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSS-SSSFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLE

Query:  ERLIEETSKCTTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQIAIFQKAL
         RL +E  +  ++  + S+L      ++R+A+VALNVWQPEV+R RQKQ+VEQ +V V+ RLR L+ME+KLCKQQI    +AL
Subjt:  ERLIEETSKCTTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQIAIFQKAL

AT1G08710.2 F-box family protein

1.2e-41

54.1

Show/hide

Query:  ILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSS-SSSFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLE
        IL+IGVK+S  +YKDLCC+SISS RL RLS  DSLW  LL  D+P+   S+  SS S +K +Y  R ER++ RK AAH RA+LRKES+I+E  RR+ +LE
Subjt:  ILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSS-SSSFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLE

Query:  ERLIEETSKCTTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQIAIFQKAL
         RL +E  +  ++  + S+L      ++R+A+VALNVWQPEV+R RQKQ+VEQ +V V+ RLR L+ME+KLCKQQI    +AL
Subjt:  ERLIEETSKCTTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQIAIFQKAL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGAGCCAATTCTCCAAATTGGTGTAAAGACCTCTGCTTTGACTTATAAAGATCTTTGTTGCGTCTCCATCTCTTCTCCTCGACTTCGCCGCCTCTCCGACCATGACTC
TCTCTGGTCTCATCTTCTTTCCTCCGATTACCCTTCATCCTCGTCTTCTTTTCCATCTTCCGCTTCCTCCTCAAAGTCCCTTTACAAAATCAGGTTGGAGAGAGATAGAT
ATAGGAAGAAAGCGGCGCATACGAGAGCTGTTCTTAGAAAGGAAAGTCAAATAGCTGAGCATTATAGGAGGGTTGGTCAATTAGAGGAACGGTTGATCGAGGAGACCAGC
AAATGCACAACGACCTTGACGGAATTGTCTAATTTACGCACAGTCAGATTTGGTCGTCTCAGGGAAGCAACAGTAGCTTTGAACGTCTGGCAGCCTGAGGTCATTAGGGC
AAGGCAAAAGCAAATTGTTGAACAATGCAGTGTATCTGTTGATTCTCGTTTGCGGACTCTAGATATGGAGCTCAAGCTTTGTAAGCAACAAATTGCTATTTTTCAAAAAG
CACTTGTAAGTTTTGAATGTGGAAACATTATTTTTCTTTCTGTCAAGAACTATTATTTTAATTTCTTATACTGCTTCCCACAGAAAGATGAAAAAAGAGATTGGAATTAG

mRNA sequence

Show/hide mRNA sequence

GATTGCTCCGATGATGTTTGGAATTGGATTCTAATTTGTAGGGCTATTTCACTCTTCATTTCCATCTTCGCAAATCCGAAAATGTCTGAATTGCCAGATGAGCTATGGAG
CCAATTCTCCAAATTGGTGTAAAGACCTCTGCTTTGACTTATAAAGATCTTTGTTGCGTCTCCATCTCTTCTCCTCGACTTCGCCGCCTCTCCGACCATGACTCTCTCTG
GTCTCATCTTCTTTCCTCCGATTACCCTTCATCCTCGTCTTCTTTTCCATCTTCCGCTTCCTCCTCAAAGTCCCTTTACAAAATCAGGTTGGAGAGAGATAGATATAGGA
AGAAAGCGGCGCATACGAGAGCTGTTCTTAGAAAGGAAAGTCAAATAGCTGAGCATTATAGGAGGGTTGGTCAATTAGAGGAACGGTTGATCGAGGAGACCAGCAAATGC
ACAACGACCTTGACGGAATTGTCTAATTTACGCACAGTCAGATTTGGTCGTCTCAGGGAAGCAACAGTAGCTTTGAACGTCTGGCAGCCTGAGGTCATTAGGGCAAGGCA
AAAGCAAATTGTTGAACAATGCAGTGTATCTGTTGATTCTCGTTTGCGGACTCTAGATATGGAGCTCAAGCTTTGTAAGCAACAAATTGCTATTTTTCAAAAAGCACTTG
TAAGTTTTGAATGTGGAAACATTATTTTTCTTTCTGTCAAGAACTATTATTTTAATTTCTTATACTGCTTCCCACAGAAAGATGAAAAAAGAGATTGGAATTAGCTAAAG
AAGAGTTAACTTCATTGAAGTATCACCCTCTAAAGGATCATAAATCTATGAATAGCAGTAATAATGATTCTCACATCAAGAGGAGGTCAAAGGATGCAATAAACGTAAGG
TTCTTGCTTGTTGATTATGCTTCAAATTTTTTTATTGTGAATTTTGATAATTTTGTCATGTTGATGATGGTTTGGTTGCTATGAAATCTGACTTTCCCGTGAATTCATGA
ATTCTAATGGTGTGGATGTGCACTGTGCTCTATTAGCATTTTTCTTCTTCGAACCATCAATACTGTTTTCTCATGATGTTAGAACTTCTCCCAGTTTTACCAAATAAACT
CATTAGGATGCTACGTACTTCTTATG

Protein sequence

Show/hide protein sequence

MEPILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSSSFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEERLIEETS
KCTTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQIAIFQKALVSFECGNIIFLSVKNYYFNFLYCFPQKDEKRDWN

IVF0022042 (gene) of Melon (IVF77) v1 genome