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IVF0022050 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0022050
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Genome locationchr12:4614577..4614933
RNA-Seq ExpressionIVF0022050
SyntenyIVF0022050
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008234 - cysteine-type peptidase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037172.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]4.15e-2478.57Show/hide
Query:  MSSRTFGARPKKTRARMPRTQFSRSRVRSCPPTVSFLCSVLVMSLSIFGARALRTSTHTPGMLLDTFSQG
        +SSRT GARPKKTRARMP TQFSR  V+S PPTVS LC VL +SLSIF A  LRTSTHTPGML DTFSQG
Subjt:  MSSRTFGARPKKTRARMPRTQFSRSRVRSCPPTVSFLCSVLVMSLSIFGARALRTSTHTPGMLLDTFSQG

KAA0059489.1 ribosomal protein L5 [Cucumis melo var. makuwa]1.77e-2977.03Show/hide
Query:  MPRTQFSRSRVRSCPPTVSFLCSVLVMSLSIFGARALRTSTHTPGMLLDTFSQGIGREASSLEGELWCDPERSK
        MPRTQFS  RV+S  PTVS LCSV V+SLSIFGARA  TS HTPGMLL TFSQGIGRE SSLEG+LWC+P+ SK
Subjt:  MPRTQFSRSRVRSCPPTVSFLCSVLVMSLSIFGARALRTSTHTPGMLLDTFSQGIGREASSLEGELWCDPERSK

KAA0062888.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]9.50e-3273.33Show/hide
Query:  MSSRTFGARPKKTRARMPRTQFSRSRVRSCPPTVSFLCSVLVMSLSIFGARALRTSTHTPGMLLDTFSQGIGREASSLEGELWCDPERSK
        ++SRT GA PKKTRARMPR+QFSRS  +S  PTVS LC VLV++LSIF AR  RTSTHT GML D FS+GIG+EASSLEGELWC+P+RSK
Subjt:  MSSRTFGARPKKTRARMPRTQFSRSRVRSCPPTVSFLCSVLVMSLSIFGARALRTSTHTPGMLLDTFSQGIGREASSLEGELWCDPERSK

TYK15439.1 uncharacterized protein E5676_scaffold477G00010 [Cucumis melo var. makuwa]4.30e-2374.24Show/hide
Query:  SRVRSCPPTVSFLCSVLVMSLSIFGARALRTSTHTPGMLLDTFSQGIGREASSLEGELWCDPERSK
        S V+S PPTVS +CSVLV+ LSIFGA   RTSTHTPGML D FS GI REA SLEGELWCDP+RS+
Subjt:  SRVRSCPPTVSFLCSVLVMSLSIFGARALRTSTHTPGMLLDTFSQGIGREASSLEGELWCDPERSK

TYK22521.1 uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa]5.21e-2650Show/hide
Query:  MSSRTFGARPKKTRARMPRTQFSRSRVRSCPPTVSFLCSVLVMSLSIFGARALRTSTHTPGMLLDTFSQ-------------------------------
        +SSRT GARPKKTRARMP+TQFSR   +S PPTVS LCSVLV SLSIFGA   RTSTHTPGML DTFS+                               
Subjt:  MSSRTFGARPKKTRARMPRTQFSRSRVRSCPPTVSFLCSVLVMSLSIFGARALRTSTHTPGMLLDTFSQ-------------------------------

Query:  -----------------------GIGREASSLEGELWCDPERSK
                               GIGREASSLEGEL CDP+ SK
Subjt:  -----------------------GIGREASSLEGELWCDPERSK

TrEMBL top hitse value%identityAlignment
A0A5A7V129 Ribosomal protein L5 (Mitochondrion)7.3e-2277.03Show/hide
Query:  MPRTQFSRSRVRSCPPTVSFLCSVLVMSLSIFGARALRTSTHTPGMLLDTFSQGIGREASSLEGELWCDPERSK
        MPRTQFS  RV+S  PTVS LCSV V+SLSIFGARA  TS HTPGMLL TFSQGIGRE SSLEG+LWC+P+ SK
Subjt:  MPRTQFSRSRVRSCPPTVSFLCSVLVMSLSIFGARALRTSTHTPGMLLDTFSQGIGREASSLEGELWCDPERSK

A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein6.4e-2673.33Show/hide
Query:  MSSRTFGARPKKTRARMPRTQFSRSRVRSCPPTVSFLCSVLVMSLSIFGARALRTSTHTPGMLLDTFSQGIGREASSLEGELWCDPERSK
        ++SRT GA PKKTRARMPR+QFSRS  +S  PTVS LC VLV++LSIF AR  RTSTHT GML D FS+GIG+EASSLEGELWC+P+RSK
Subjt:  MSSRTFGARPKKTRARMPRTQFSRSRVRSCPPTVSFLCSVLVMSLSIFGARALRTSTHTPGMLLDTFSQGIGREASSLEGELWCDPERSK

A0A5A7VEB1 Retrotransposon protein, putative, Ty3-gypsy subclass, expressed8.3e-1852.68Show/hide
Query:  MSSRTFGARPKKTRARMPRTQFSRSRVRSCPPTVSFLCSVLVMSLSIFGARALRTSTHTPGMLLDTFSQGIGREASSLEGELWCDPERSKDGQ-CFQRVA
        +SSR     P+K R RMP TQF    V++ P  VS+ C VLV+S S F    LRTS + PG++  +FSQ IGREASS +GE  C+P+RSK     FQRVA
Subjt:  MSSRTFGARPKKTRARMPRTQFSRSRVRSCPPTVSFLCSVLVMSLSIFGARALRTSTHTPGMLLDTFSQGIGREASSLEGELWCDPERSKDGQ-CFQRVA

Query:  NARPVSETTKYA
        NARPVS   K+A
Subjt:  NARPVSETTKYA

A0A5D3CQ36 Putative nuclease HARBI13.7e-1878.57Show/hide
Query:  MSSRTFGARPKKTRARMPRTQFSRSRVRSCPPTVSFLCSVLVMSLSIFGARALRTSTHTPGMLLDTFSQG
        +SSRT GARPKKTRARMP TQFSR  V+S PPTVS LC VL +SLSIF A  LRTSTHTPGML DTFSQG
Subjt:  MSSRTFGARPKKTRARMPRTQFSRSRVRSCPPTVSFLCSVLVMSLSIFGARALRTSTHTPGMLLDTFSQG

A0A5D3DFP2 Uncharacterized protein6.2e-2150Show/hide
Query:  MSSRTFGARPKKTRARMPRTQFSRSRVRSCPPTVSFLCSVLVMSLSIFGARALRTSTHTPGMLLDTFSQ-------------------------------
        +SSRT GARPKKTRARMP+TQFSR   +S PPTVS LCSVLV SLSIFGA   RTSTHTPGML DTFS+                               
Subjt:  MSSRTFGARPKKTRARMPRTQFSRSRVRSCPPTVSFLCSVLVMSLSIFGARALRTSTHTPGMLLDTFSQ-------------------------------

Query:  -----------------------GIGREASSLEGELWCDPERSK
                               GIGREASSLEGEL CDP+ SK
Subjt:  -----------------------GIGREASSLEGELWCDPERSK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCTCGAGGACTTTCGGTGCACGTCCTAAGAAAACACGAGCGAGAATGCCTCGGACTCAGTTTTCTCGTTCTAGGGTAAGAAGCTGTCCCCCGACGGTCTCTTTCCT
TTGCTCCGTATTGGTCATGAGTCTTTCGATCTTTGGGGCTCGTGCTCTGAGGACTTCAACCCACACTCCAGGCATGCTCCTCGACACGTTTTCCCAAGGTATAGGTCGAG
AAGCGAGCTCGTTGGAGGGAGAACTATGGTGCGACCCAGAACGGTCCAAAGATGGCCAATGCTTCCAACGAGTGGCGAACGCTCGTCCGGTGTCAGAAACTACTAAATAT
GCACTTGCAGCGAAGGAAACAGACTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGCTCGAGGACTTTCGGTGCACGTCCTAAGAAAACACGAGCGAGAATGCCTCGGACTCAGTTTTCTCGTTCTAGGGTAAGAAGCTGTCCCCCGACGGTCTCTTTCCT
TTGCTCCGTATTGGTCATGAGTCTTTCGATCTTTGGGGCTCGTGCTCTGAGGACTTCAACCCACACTCCAGGCATGCTCCTCGACACGTTTTCCCAAGGTATAGGTCGAG
AAGCGAGCTCGTTGGAGGGAGAACTATGGTGCGACCCAGAACGGTCCAAAGATGGCCAATGCTTCCAACGAGTGGCGAACGCTCGTCCGGTGTCAGAAACTACTAAATAT
GCACTTGCAGCGAAGGAAACAGACTGA
Protein sequenceShow/hide protein sequence
MSSRTFGARPKKTRARMPRTQFSRSRVRSCPPTVSFLCSVLVMSLSIFGARALRTSTHTPGMLLDTFSQGIGREASSLEGELWCDPERSKDGQCFQRVANARPVSETTKY
ALAAKETD