CuGenDBv2

Gene ID	IVF0022124
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr07:9840881..9841186
RNA-Seq Expression	IVF0022124
Synteny	IVF0022124
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR025314 - Domain of unknown function DUF4219

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0026102.1 putative copia-type polyprotein [Cucumis melo var. makuwa]

8.19e-54

Show/hide

Query:  MANNNLVLFLVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALIIIHQAIDDNNFKKIFGATTAYQAWQILE
        MANNNLV F VPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKAL IIHQAIDDNNF+KI GATTAYQAWQILE
Subjt:  MANNNLVLFLVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALIIIHQAIDDNNFKKIFGATTAYQAWQILE

KAA0038956.1 copia protein [Cucumis melo var. makuwa]

2.32e-54

Show/hide

Query:  MANNNLVLFLVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALIIIHQAIDDNNFKKIFGATTAYQAWQILE
        MANNNLV   VPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKAL IIHQAIDDNNF+KI GATTAYQAW+ILE
Subjt:  MANNNLVLFLVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALIIIHQAIDDNNFKKIFGATTAYQAWQILE

KAA0051409.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

5.51e-57

Show/hide

Query:  MANNNLVLFLVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALIIIHQAIDDNNFKKIFGATTAYQAWQILE
        MANNNLV F VPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKAL IIHQAIDDNNF+KI GATTAYQAW+ILE
Subjt:  MANNNLVLFLVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALIIIHQAIDDNNFKKIFGATTAYQAWQILE

TYK13816.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

9.34e-54

Show/hide

Query:  MANNNLVLFLVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALIIIHQAIDDNNFKKIFGATTAYQAWQILE
        MANNNLV F VPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKAL IIHQAIDDNNF+KI GATTAYQAWQILE
Subjt:  MANNNLVLFLVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALIIIHQAIDDNNFKKIFGATTAYQAWQILE

XP_008456214.1 PREDICTED: uncharacterized protein LOC103496217, partial [Cucumis melo]

1.09e-55

Show/hide

Query:  MANNNLVLFLVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALIIIHQAIDDNNFKKIFGATTAYQAWQILE
        MANNNLV   VPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDA+LNQAQREALQNTRKKDQKAL IIHQAIDDNNF+KI GATTAYQAW+ILE
Subjt:  MANNNLVLFLVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALIIIHQAIDDNNFKKIFGATTAYQAWQILE

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SLT1 Putative copia-type polyprotein

8.1e-46

Show/hide

Query:  MANNNLVLFLVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALIIIHQAIDDNNFKKIFGATTAYQAWQILE
        MANNNLV F VPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKAL IIHQAIDDNNF+KI GATTAYQAWQILE
Subjt:  MANNNLVLFLVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALIIIHQAIDDNNFKKIFGATTAYQAWQILE

A0A5A7UDA0 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.3e-45

Show/hide

Query:  MANNNLVLFLVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALIIIHQAIDDNNFKKIFGATTAYQAWQILE
        MANNNLV F VPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKAL IIHQAIDDNNF+KI GATTAYQAW+ILE
Subjt:  MANNNLVLFLVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALIIIHQAIDDNNFKKIFGATTAYQAWQILE

A0A5A7V277 Retrovirus-related Pol polyprotein from transposon TNT 1-94

8.1e-46

Show/hide

Query:  MANNNLVLFLVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALIIIHQAIDDNNFKKIFGATTAYQAWQILE
        MANNNLV F VPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKAL IIHQAIDDNNF+KI GATTAYQAWQILE
Subjt:  MANNNLVLFLVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALIIIHQAIDDNNFKKIFGATTAYQAWQILE

A0A5A7V8Y7 Retrovirus-related Pol polyprotein from transposon TNT 1-94

8.9e-45

Show/hide

Query:  MANNNLVLFLVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALIIIHQAIDDNNFKKIFGATTAYQAWQILE
        MANNNLV F VPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKK QKAL IIHQAIDDNNF+KI GATTAYQAWQILE
Subjt:  MANNNLVLFLVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALIIIHQAIDDNNFKKIFGATTAYQAWQILE

A0A5D3CTU3 Retrovirus-related Pol polyprotein from transposon TNT 1-94

8.1e-46

Show/hide

Query:  MANNNLVLFLVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALIIIHQAIDDNNFKKIFGATTAYQAWQILE
        MANNNLV F VPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKAL IIHQAIDDNNF+KI GATTAYQAWQILE
Subjt:  MANNNLVLFLVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALIIIHQAIDDNNFKKIFGATTAYQAWQILE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G48720.1 unknown protein

5.6e-23

51.09

Show/hide

Query:  MANNNLVLFLVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALIIIHQAIDDNNFKKIFGATTA
        MA+NN V F VP LTK NY +W +RMKA+LG+ DVW+IV  G+ EPE++ +L+Q Q++ L+++RK+D+KAL +I+Q +D++ F+K+  AT+A
Subjt:  MANNNLVLFLVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALIIIHQAIDDNNFKKIFGATTA

AT3G21000.1 Gag-Pol-related retrotransposon family protein

2.1e-06

30.34

Show/hide

Query:  NYSSWCIRMKALLGSQDVWDIVSNGY-----EEPESDAALNQAQREALQNTRKKDQKALIIIHQAIDDNNFKKIFGATTAYQAWQILEK
        +Y  W    K+ L  Q +WD+V NG      + PE  A +   +    ++   KD KAL I+  ++ D+ F+K   A++A   W +L K
Subjt:  NYSSWCIRMKALLGSQDVWDIVSNGY-----EEPESDAALNQAQREALQNTRKKDQKALIIIHQAIDDNNFKKIFGATTAYQAWQILEK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCAAACAACAATTTAGTTCTCTTCCTAGTACCTCGACTTACAAAAGAAAATTATAGTAGTTGGTGTATTCGAATGAAAGCTCTACTTGGTTCACAAGATGTGTGGGA
CATTGTTAGTAATGGTTATGAAGAACCAGAAAGTGATGCAGCTTTGAATCAAGCTCAGCGAGAAGCTTTACAAAATACAAGAAAAAAAGATCAAAAGGCTCTCATCATCA
TTCATCAAGCCATTGATGATAACAATTTTAAGAAAATTTTTGGAGCAACTACTGCATATCAAGCATGGCAAATTTTGGAGAAATAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MANNNLVLFLVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALIIIHQAIDDNNFKKIFGATTAYQAWQILEK

IVF0022124 (gene) of Melon (IVF77) v1 genome