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IVF0022153 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0022153
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionLysM domain-containing protein
Genome locationchr08:2144850..2145297
RNA-Seq ExpressionIVF0022153
SyntenyIVF0022153
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR018392 - LysM domain
IPR036779 - LysM domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4397990.1 hypothetical protein G4B88_019711 [Cannabis sativa]3.65e-1969.23Show/hide
Query:  CNKVYGVKDGDTCFALEQKFKITTAHFNFINPNLNCTDLFIGQWLCLDAVLI
        C  VYGVKDGDTCFAL QKFK+TT  F  INPNLNC  LF+ QWLC+D  L+
Subjt:  CNKVYGVKDGDTCFALEQKFKITTAHFNFINPNLNCTDLFIGQWLCLDAVLI

KGN49182.1 hypothetical protein Csa_004378 [Cucumis sativus]1.96e-2962.63Show/hide
Query:  MAKAMIMISSSLPIFLLAFSLLIFSISVETRSTPFRDGA---EGLELQCNKVYGVKDGDTCFALEQKFKITTAHFNFINPNLNCTDLFIGQWLCLDAVL
        MAKA I    S+ IFLLA SLLIF+ISV+ R+  FR+       LELQCNK YGVK GDTCFA+ Q FK+TT HF+FINPNLNC+ LF+ QWLC++A L
Subjt:  MAKAMIMISSSLPIFLLAFSLLIFSISVETRSTPFRDGA---EGLELQCNKVYGVKDGDTCFALEQKFKITTAHFNFINPNLNCTDLFIGQWLCLDAVL

KGN49183.1 hypothetical protein Csa_003390 [Cucumis sativus]2.00e-5088.89Show/hide
Query:  MAKAMIMISSSLPIFLLAFSLLIFSISVETRSTPFRDGAE-GLELQCNKVYGVKDGDTCFALEQKFKITTAHFNFINPNLNCTDLFIGQWLCLDAVLIL
        MAKAMI  SSS PIFLLAFSLLIFSISVETRSTPFR   E GLELQCNKVYGVK+GDTCF LEQKFKITT HF+FINPNLNCTDLFIGQWLCLDAVLIL
Subjt:  MAKAMIMISSSLPIFLLAFSLLIFSISVETRSTPFRDGAE-GLELQCNKVYGVKDGDTCFALEQKFKITTAHFNFINPNLNCTDLFIGQWLCLDAVLIL

XP_016899229.1 PREDICTED: lysM domain-containing protein ARB_00327-like [Cucumis melo]3.42e-2963.54Show/hide
Query:  MAKAMIMISSSLPIFLLAFSLLIFSISVETRSTPFRDGAEGLELQCNKVYGVKDGDTCFALEQKFKITTAHFNFINPNLNCTDLFIGQWLCLDAVL
        MAKA I I+    IFLLAF LLIFSISV+            LELQCNK YGVK GDTCFAL   FK++T HFNFINPNLNC+ LF+GQWLC++A L
Subjt:  MAKAMIMISSSLPIFLLAFSLLIFSISVETRSTPFRDGAEGLELQCNKVYGVKDGDTCFALEQKFKITTAHFNFINPNLNCTDLFIGQWLCLDAVL

XP_031742455.1 lysM domain-containing protein ARB_00327-like [Cucumis sativus]3.98e-2861.46Show/hide
Query:  MAKAMIMISSSLPIFLLAFSLLIFSISVETRSTPFRDGAEGLELQCNKVYGVKDGDTCFALEQKFKITTAHFNFINPNLNCTDLFIGQWLCLDAVL
        MAKA I    S+ IFLLA SLLIF+ISV+            LELQCNK YGVK GDTCFA+ Q FK+TT HF+FINPNLNC+ LF+ QWLC++A L
Subjt:  MAKAMIMISSSLPIFLLAFSLLIFSISVETRSTPFRDGAEGLELQCNKVYGVKDGDTCFALEQKFKITTAHFNFINPNLNCTDLFIGQWLCLDAVL

TrEMBL top hitse value%identityAlignment
A0A0A0KHZ8 LysM domain-containing protein3.6e-3888.89Show/hide
Query:  MAKAMIMISSSLPIFLLAFSLLIFSISVETRSTPFRDGAE-GLELQCNKVYGVKDGDTCFALEQKFKITTAHFNFINPNLNCTDLFIGQWLCLDAVLIL
        MAKA  MISSS PIFLLAFSLLIFSISVETRSTPFR   E GLELQCNKVYGVK+GDTCF LEQKFKITT HF+FINPNLNCTDLFIGQWLCLDAVLIL
Subjt:  MAKAMIMISSSLPIFLLAFSLLIFSISVETRSTPFRDGAE-GLELQCNKVYGVKDGDTCFALEQKFKITTAHFNFINPNLNCTDLFIGQWLCLDAVLIL

A0A0A0KLD2 LysM domain-containing protein3.6e-2262.63Show/hide
Query:  MAKAMIMISSSLPIFLLAFSLLIFSISVETRSTPFRD---GAEGLELQCNKVYGVKDGDTCFALEQKFKITTAHFNFINPNLNCTDLFIGQWLCLDAVL
        MAKA I    S+ IFLLA SLLIF+ISV+ R+  FR+       LELQCNK YGVK GDTCFA+ Q FK+TT HF+FINPNLNC+ LF+ QWLC++A L
Subjt:  MAKAMIMISSSLPIFLLAFSLLIFSISVETRSTPFRD---GAEGLELQCNKVYGVKDGDTCFALEQKFKITTAHFNFINPNLNCTDLFIGQWLCLDAVL

A0A1S4DTB4 lysM domain-containing protein ARB_00327-like6.1e-2263.54Show/hide
Query:  MAKAMIMISSSLPIFLLAFSLLIFSISVETRSTPFRDGAEGLELQCNKVYGVKDGDTCFALEQKFKITTAHFNFINPNLNCTDLFIGQWLCLDAVL
        MAKA I I+    IFLLAF LLIFSISV+            LELQCNK YGVK GDTCFAL   FK++T HFNFINPNLNC+ LF+GQWLC++A L
Subjt:  MAKAMIMISSSLPIFLLAFSLLIFSISVETRSTPFRDGAEGLELQCNKVYGVKDGDTCFALEQKFKITTAHFNFINPNLNCTDLFIGQWLCLDAVL

A0A7J6GVG8 LysM domain-containing protein6.1e-1469.23Show/hide
Query:  CNKVYGVKDGDTCFALEQKFKITTAHFNFINPNLNCTDLFIGQWLCLDAVLI
        C  VYGVKDGDTCFAL QKFK+TT  F  INPNLNC  LF+ QWLC+D  L+
Subjt:  CNKVYGVKDGDTCFALEQKFKITTAHFNFINPNLNCTDLFIGQWLCLDAVLI

M1C1H7 LysM domain-containing protein2.7e-1448.78Show/hide
Query:  FLLAFSLLIFSISVETRSTPFRDGAEGLELQCNKVYGVKDGDTCFALEQKFKITTAHFNFINPNLNCTDLFIGQWLCLDAVL
        F+L  SLL+F   VE++ T     +   E++C+KV  VKDGDTCF +   F + +  FN INPNL CT LF+GQWLC+D  L
Subjt:  FLLAFSLLIFSISVETRSTPFRDGAEGLELQCNKVYGVKDGDTCFALEQKFKITTAHFNFINPNLNCTDLFIGQWLCLDAVL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTAAGGCTATGATCATGATCTCCTCCTCATTGCCCATCTTCCTATTGGCTTTCTCTCTTCTCATTTTCTCTATTTCCGTCGAAACTCGTTCTACTCCCTTCCGTGA
CGGTGCTGAAGGGTTGGAGTTGCAATGCAACAAAGTTTATGGAGTAAAAGATGGAGACACATGCTTTGCTCTTGAACAGAAATTTAAGATCACCACTGCCCACTTCAATT
TTATCAATCCAAATCTCAATTGCACTGATCTTTTTATTGGCCAATGGCTTTGTCTCGATGCTGTCCTTATCCTCTCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTAAGGCTATGATCATGATCTCCTCCTCATTGCCCATCTTCCTATTGGCTTTCTCTCTTCTCATTTTCTCTATTTCCGTCGAAACTCGTTCTACTCCCTTCCGTGA
CGGTGCTGAAGGGTTGGAGTTGCAATGCAACAAAGTTTATGGAGTAAAAGATGGAGACACATGCTTTGCTCTTGAACAGAAATTTAAGATCACCACTGCCCACTTCAATT
TTATCAATCCAAATCTCAATTGCACTGATCTTTTTATTGGCCAATGGCTTTGTCTCGATGCTGTCCTTATCCTCTCCTAA
Protein sequenceShow/hide protein sequence
MAKAMIMISSSLPIFLLAFSLLIFSISVETRSTPFRDGAEGLELQCNKVYGVKDGDTCFALEQKFKITTAHFNFINPNLNCTDLFIGQWLCLDAVLILS