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IVF0022169 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0022169
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationchr01:19588099..19588461
RNA-Seq ExpressionIVF0022169
SyntenyIVF0022169
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038356.1 pol [Cucumis melo var. makuwa]1.40e-5068.33Show/hide
Query:  MAKLLVKYNINHRVATAYHPQTNGQAEVSNREMKKILEKMVTFFRKDWADHLGSTLWTYRNKYKTPLEMSRYALDFGKACNLPIKLEHKVLWVCKKLNFD
        MAKL VKYNI H+VAT YH QTNGQ EVSN ++KKILEK+V    KDW DHL STLWTYR  YKTPL +S YAL FGK C+LP+KLEHK LW CKKLNF+
Subjt:  MAKLLVKYNINHRVATAYHPQTNGQAEVSNREMKKILEKMVTFFRKDWADHLGSTLWTYRNKYKTPLEMSRYALDFGKACNLPIKLEHKVLWVCKKLNFD

Query:  NHDIEEAKLLQLHEFQQWRS
         +   EA LLQL+EFQ+  S
Subjt:  NHDIEEAKLLQLHEFQQWRS

KAA0040818.1 Pol polyprotein [Cucumis melo var. makuwa]2.35e-86100Show/hide
Query:  MAKLLVKYNINHRVATAYHPQTNGQAEVSNREMKKILEKMVTFFRKDWADHLGSTLWTYRNKYKTPLEMSRYALDFGKACNLPIKLEHKVLWVCKKLNFD
        MAKLLVKYNINHRVATAYHPQTNGQAEVSNREMKKILEKMVTFFRKDWADHLGSTLWTYRNKYKTPLEMSRYALDFGKACNLPIKLEHKVLWVCKKLNFD
Subjt:  MAKLLVKYNINHRVATAYHPQTNGQAEVSNREMKKILEKMVTFFRKDWADHLGSTLWTYRNKYKTPLEMSRYALDFGKACNLPIKLEHKVLWVCKKLNFD

Query:  NHDIEEAKLLQLHEFQQWRS
        NHDIEEAKLLQLHEFQQWRS
Subjt:  NHDIEEAKLLQLHEFQQWRS

TYJ97037.1 pol [Cucumis melo var. makuwa]5.10e-4968.33Show/hide
Query:  MAKLLVKYNINHRVATAYHPQTNGQAEVSNREMKKILEKMVTFFRKDWADHLGSTLWTYRNKYKTPLEMSRYALDFGKACNLPIKLEHKVLWVCKKLNFD
        MAKL VKYNI H+VAT YH QTNGQ EVSN ++KKILEK+V    KDW DHL STLWTYR  YKTPL +S YAL FGK C+LP+KLEHK LW CKKLNF+
Subjt:  MAKLLVKYNINHRVATAYHPQTNGQAEVSNREMKKILEKMVTFFRKDWADHLGSTLWTYRNKYKTPLEMSRYALDFGKACNLPIKLEHKVLWVCKKLNFD

Query:  NHDIEEAKLLQLHEFQQWRS
         +   EA LLQL+EFQ+  S
Subjt:  NHDIEEAKLLQLHEFQQWRS

XP_038877833.1 uncharacterized protein LOC120070047 [Benincasa hispida]1.72e-4664.1Show/hide
Query:  KLLVKYNINHRVATAYHPQTNGQAEVSNREMKKILEKMVTFFRKDWADHLGSTLWTYRNKYKTPLEMSRYALDFGKACNLPIKLEHKVLWVCKKLNFDNH
        KLL+KYN+ H++ATAYHPQTNGQAEVSNRE+K ILEK+V   RKDWA  L   L  Y+  YKTP+ MS YAL FGKAC+LP++LEHKVLW  KKLNFD  
Subjt:  KLLVKYNINHRVATAYHPQTNGQAEVSNREMKKILEKMVTFFRKDWADHLGSTLWTYRNKYKTPLEMSRYALDFGKACNLPIKLEHKVLWVCKKLNFDNH

Query:  DIEEAKLLQLHEFQQWR
         + E + LQL E  +WR
Subjt:  DIEEAKLLQLHEFQQWR

XP_038904199.1 uncharacterized protein K02A2.6-like [Benincasa hispida]3.72e-4656.3Show/hide
Query:  MAKLLVKYNINHRVATAYHPQTNGQAEVSNREMKKILEKMVTFFRKDWADHLGSTLWTYRNKYKTPLEMSRYALDFGKACNLPIKLEHKVLWVCKKLNFD
        +  LL K+N++HRVATAYHPQTNGQAE+SNRE+K ILEK+ + FRKDW+  L   LW YR  +KTP+ MS YAL F K+C+LP++L+H+ +W  KKLNFD
Subjt:  MAKLLVKYNINHRVATAYHPQTNGQAEVSNREMKKILEKMVTFFRKDWADHLGSTLWTYRNKYKTPLEMSRYALDFGKACNLPIKLEHKVLWVCKKLNFD

Query:  NHDIEEAKLLQLHEFQQWR
          ++ + + LQL+E  +WR
Subjt:  NHDIEEAKLLQLHEFQQWR

TrEMBL top hitse value%identityAlignment
A0A5A7T814 Pol2.3e-3968.33Show/hide
Query:  MAKLLVKYNINHRVATAYHPQTNGQAEVSNREMKKILEKMVTFFRKDWADHLGSTLWTYRNKYKTPLEMSRYALDFGKACNLPIKLEHKVLWVCKKLNFD
        MAKL VKYNI H+VAT YH QTNGQ EVSN ++KKILEK+V    KDW DHL STLWTYR  YKTPL +S YAL FGK C+LP+KLEHK LW CKKLNF+
Subjt:  MAKLLVKYNINHRVATAYHPQTNGQAEVSNREMKKILEKMVTFFRKDWADHLGSTLWTYRNKYKTPLEMSRYALDFGKACNLPIKLEHKVLWVCKKLNFD

Query:  NHDIEEAKLLQLHEFQQWRS
         +   EA LLQL+EFQ+  S
Subjt:  NHDIEEAKLLQLHEFQQWRS

A0A5A7TD06 Pol polyprotein7.1e-65100Show/hide
Query:  MAKLLVKYNINHRVATAYHPQTNGQAEVSNREMKKILEKMVTFFRKDWADHLGSTLWTYRNKYKTPLEMSRYALDFGKACNLPIKLEHKVLWVCKKLNFD
        MAKLLVKYNINHRVATAYHPQTNGQAEVSNREMKKILEKMVTFFRKDWADHLGSTLWTYRNKYKTPLEMSRYALDFGKACNLPIKLEHKVLWVCKKLNFD
Subjt:  MAKLLVKYNINHRVATAYHPQTNGQAEVSNREMKKILEKMVTFFRKDWADHLGSTLWTYRNKYKTPLEMSRYALDFGKACNLPIKLEHKVLWVCKKLNFD

Query:  NHDIEEAKLLQLHEFQQWRS
        NHDIEEAKLLQLHEFQQWRS
Subjt:  NHDIEEAKLLQLHEFQQWRS

A0A5D3BD35 Pol2.3e-3968.33Show/hide
Query:  MAKLLVKYNINHRVATAYHPQTNGQAEVSNREMKKILEKMVTFFRKDWADHLGSTLWTYRNKYKTPLEMSRYALDFGKACNLPIKLEHKVLWVCKKLNFD
        MAKL VKYNI H+VAT YH QTNGQ EVSN ++KKILEK+V    KDW DHL STLWTYR  YKTPL +S YAL FGK C+LP+KLEHK LW CKKLNF+
Subjt:  MAKLLVKYNINHRVATAYHPQTNGQAEVSNREMKKILEKMVTFFRKDWADHLGSTLWTYRNKYKTPLEMSRYALDFGKACNLPIKLEHKVLWVCKKLNFD

Query:  NHDIEEAKLLQLHEFQQWRS
         +   EA LLQL+EFQ+  S
Subjt:  NHDIEEAKLLQLHEFQQWRS

A0A5D3DV18 KRAB-A domain-containing protein 2-like2.2e-3458.97Show/hide
Query:  MAKLLVKYNINHRVATAYHPQTNGQAEVSNREMKKILEKMVTFFRKDWADHLGSTLWTYRNKYKTPLEMSRYALDFGKACNLPIKLEHKVLWVCKKLNFD
        + KLL KY I H++A AYHPQTNGQA+VSNRE K ILEK+V    K+WA +L  T+W YR  YK P+ M+ YAL   KAC+LP++ EHKV+W CKKLN +
Subjt:  MAKLLVKYNINHRVATAYHPQTNGQAEVSNREMKKILEKMVTFFRKDWADHLGSTLWTYRNKYKTPLEMSRYALDFGKACNLPIKLEHKVLWVCKKLNFD

Query:  NHDIEEAKLLQLHEFQQ
        ++  EEA+LLQLHE Q+
Subjt:  NHDIEEAKLLQLHEFQQ

A0A6P4BIF0 uncharacterized protein K02A2.6-like1.4e-3357.26Show/hide
Query:  LLVKYNINHRVATAYHPQTNGQAEVSNREMKKILEKMVTFFRKDWADHLGSTLWTYRNKYKTPLEMSRYALDFGKACNLPIKLEHKVLWVCKKLNFDNHD
        LL+KY + H+VAT YHPQ NGQAE+SNRE+K+ILE+ V   RK+W+  L   LW YR  +KTP+ MS Y L FGKAC+LP++LEH+V W  K LNFDNH 
Subjt:  LLVKYNINHRVATAYHPQTNGQAEVSNREMKKILEKMVTFFRKDWADHLGSTLWTYRNKYKTPLEMSRYALDFGKACNLPIKLEHKVLWVCKKLNFDNHD

Query:  IEEAKLLQLHEFQQWRS
          E +LLQL+E +++R+
Subjt:  IEEAKLLQLHEFQQWRS

SwissProt top hitse value%identityAlignment
O93209 Pro-Pol polyprotein5.5e-0630.95Show/hide
Query:  NINHRVATAYHPQTNGQAEVSNREMKKILEKMVTFFRKDWADHLGSTLWTYRNKYKTPLEMSRYALDFGKACNLPIKLEHKVLW
        NI    +T YHPQ++G+ E  N E+KK+L K++      W + + S      N +    + + + L FG  CNLP   +  + W
Subjt:  NINHRVATAYHPQTNGQAEVSNREMKKILEKMVTFFRKDWADHLGSTLWTYRNKYKTPLEMSRYALDFGKACNLPIKLEHKVLW

P0CT34 Transposon Tf2-1 polyprotein8.7e-0427.94Show/hide
Query:  KYNINHRVATAYHPQTNGQAEVSNREMKKILEKMVTFFRKDWADHLGSTLWTYRNKYKTPLEMSRYAL
        KYN   + +  Y PQT+GQ E +N+ ++K+L  + +     W DH+     +Y N   +  +M+ + +
Subjt:  KYNINHRVATAYHPQTNGQAEVSNREMKKILEKMVTFFRKDWADHLGSTLWTYRNKYKTPLEMSRYAL

P0CT35 Transposon Tf2-2 polyprotein8.7e-0427.94Show/hide
Query:  KYNINHRVATAYHPQTNGQAEVSNREMKKILEKMVTFFRKDWADHLGSTLWTYRNKYKTPLEMSRYAL
        KYN   + +  Y PQT+GQ E +N+ ++K+L  + +     W DH+     +Y N   +  +M+ + +
Subjt:  KYNINHRVATAYHPQTNGQAEVSNREMKKILEKMVTFFRKDWADHLGSTLWTYRNKYKTPLEMSRYAL

P0CT41 Transposon Tf2-12 polyprotein8.7e-0427.94Show/hide
Query:  KYNINHRVATAYHPQTNGQAEVSNREMKKILEKMVTFFRKDWADHLGSTLWTYRNKYKTPLEMSRYAL
        KYN   + +  Y PQT+GQ E +N+ ++K+L  + +     W DH+     +Y N   +  +M+ + +
Subjt:  KYNINHRVATAYHPQTNGQAEVSNREMKKILEKMVTFFRKDWADHLGSTLWTYRNKYKTPLEMSRYAL

Q9UR07 Transposon Tf2-11 polyprotein8.7e-0427.94Show/hide
Query:  KYNINHRVATAYHPQTNGQAEVSNREMKKILEKMVTFFRKDWADHLGSTLWTYRNKYKTPLEMSRYAL
        KYN   + +  Y PQT+GQ E +N+ ++K+L  + +     W DH+     +Y N   +  +M+ + +
Subjt:  KYNINHRVATAYHPQTNGQAEVSNREMKKILEKMVTFFRKDWADHLGSTLWTYRNKYKTPLEMSRYAL

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTAAATTGCTTGTGAAGTACAACATCAACCATAGAGTTGCAACCGCCTACCATCCTCAAACAAATGGTCAGGCGGAGGTTTCCAATAGAGAAATGAAGAAGATATT
AGAAAAAATGGTAACTTTTTTCCGTAAGGACTGGGCAGATCACCTGGGTTCAACATTATGGACTTATCGCAACAAGTACAAGACGCCTCTTGAAATGTCTCGTTATGCGC
TAGACTTTGGAAAAGCTTGTAATTTACCAATCAAGTTGGAGCATAAGGTTTTATGGGTGTGCAAAAAGTTAAACTTTGACAATCACGACATAGAAGAAGCAAAATTACTA
CAATTACATGAGTTTCAACAATGGCGCTCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTAAATTGCTTGTGAAGTACAACATCAACCATAGAGTTGCAACCGCCTACCATCCTCAAACAAATGGTCAGGCGGAGGTTTCCAATAGAGAAATGAAGAAGATATT
AGAAAAAATGGTAACTTTTTTCCGTAAGGACTGGGCAGATCACCTGGGTTCAACATTATGGACTTATCGCAACAAGTACAAGACGCCTCTTGAAATGTCTCGTTATGCGC
TAGACTTTGGAAAAGCTTGTAATTTACCAATCAAGTTGGAGCATAAGGTTTTATGGGTGTGCAAAAAGTTAAACTTTGACAATCACGACATAGAAGAAGCAAAATTACTA
CAATTACATGAGTTTCAACAATGGCGCTCCTGA
Protein sequenceShow/hide protein sequence
MAKLLVKYNINHRVATAYHPQTNGQAEVSNREMKKILEKMVTFFRKDWADHLGSTLWTYRNKYKTPLEMSRYALDFGKACNLPIKLEHKVLWVCKKLNFDNHDIEEAKLL
QLHEFQQWRS