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IVF0022221 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0022221
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr09:7253424..7253726
RNA-Seq ExpressionIVF0022221
SyntenyIVF0022221
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040613.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]5.34e-58100Show/hide
Query:  MLTKGYCRCTIHRHGQHVDSGELPMSNNDIANRLLSTSSCTSAYMNHRGSIDRPSNDVASIERSFTTTETDSLDSSKLILDGFKILIEANAKKIKVVDN
        MLTKGYCRCTIHRHGQHVDSGELPMSNNDIANRLLSTSSCTSAYMNHRGSIDRPSNDVASIERSFTTTETDSLDSSKLILDGFKILIEANAKKIKVVDN
Subjt:  MLTKGYCRCTIHRHGQHVDSGELPMSNNDIANRLLSTSSCTSAYMNHRGSIDRPSNDVASIERSFTTTETDSLDSSKLILDGFKILIEANAKKIKVVDN
TrEMBL top hitse value%identityAlignment
A0A5A7TC06 Retrovirus-related Pol polyprotein from transposon TNT 1-946.5e-48100Show/hide
Query:  MLTKGYCRCTIHRHGQHVDSGELPMSNNDIANRLLSTSSCTSAYMNHRGSIDRPSNDVASIERSFTTTETDSLDSSKLILDGFKILIEANAKKIKVVDN
        MLTKGYCRCTIHRHGQHVDSGELPMSNNDIANRLLSTSSCTSAYMNHRGSIDRPSNDVASIERSFTTTETDSLDSSKLILDGFKILIEANAKKIKVVDN
Subjt:  MLTKGYCRCTIHRHGQHVDSGELPMSNNDIANRLLSTSSCTSAYMNHRGSIDRPSNDVASIERSFTTTETDSLDSSKLILDGFKILIEANAKKIKVVDN
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGACAAAGGGTTACTGCCGATGCACTATCCACCGACATGGTCAACACGTCGACAGTGGAGAACTACCGATGTCTAATAACGACATCGCAAATAGGTTACTGTCGAC
GTCGTCATGTACATCAGCGTACATGAACCACCGAGGCAGCATCGACAGACCTTCTAACGACGTCGCGTCGATAGAACGATCATTCACTACTACAGAAACAGACTCTCTTG
ACAGTTCTAAACTTATTCTTGACGGTTTTAAAATCCTCATTGAAGCCAATGCCAAGAAAATCAAAGTTGTTGACAATTGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTGACAAAGGGTTACTGCCGATGCACTATCCACCGACATGGTCAACACGTCGACAGTGGAGAACTACCGATGTCTAATAACGACATCGCAAATAGGTTACTGTCGAC
GTCGTCATGTACATCAGCGTACATGAACCACCGAGGCAGCATCGACAGACCTTCTAACGACGTCGCGTCGATAGAACGATCATTCACTACTACAGAAACAGACTCTCTTG
ACAGTTCTAAACTTATTCTTGACGGTTTTAAAATCCTCATTGAAGCCAATGCCAAGAAAATCAAAGTTGTTGACAATTGGTAA
Protein sequenceShow/hide protein sequence
MLTKGYCRCTIHRHGQHVDSGELPMSNNDIANRLLSTSSCTSAYMNHRGSIDRPSNDVASIERSFTTTETDSLDSSKLILDGFKILIEANAKKIKVVDNW