CuGenDBv2

Gene ID	IVF0022272
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial
Genome location	chr04:1343416..1347267
RNA-Seq Expression	IVF0022272
Synteny	IVF0022272
Gene Ontology terms	GO:0006450 - regulation of translational fidelity (biological process) GO:0032543 - mitochondrial translation (biological process) GO:0070681 - glutaminyl-tRNAGln biosynthesis via transamidation (biological process) GO:0005739 - mitochondrion (cellular component) GO:0009507 - chloroplast (cellular component) GO:0030956 - glutamyl-tRNA(Gln) amidotransferase complex (cellular component) GO:0005524 - ATP binding (molecular function) GO:0016740 - transferase activity (molecular function) GO:0050567 - glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity (molecular function)
InterPro domains	IPR003837 - Glu-tRNAGln amidotransferase C subunit IPR036113 - Glu-tRNAGln amidotransferase superfamily, subunit C

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004136231.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucumis sativus]

2.96e-92

95.17

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Query:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLAQTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPS
        MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNI+IR SSTASG+ ASLQPPDVPRLAQTARISLTPTQ EEFAPKITQVVDWFGQLQTVDLQSIEPS
Subjt:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLAQTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPS

Query:  IRADTEGGNQRNDVPETFENREAMIGAVPVFDEPYIKVPKVLNKE
        IRADTEGG+QRND+PETFENREAMIGAVPVFDEPYIKVPKVLNKE
Subjt:  IRADTEGGNQRNDVPETFENREAMIGAVPVFDEPYIKVPKVLNKE

XP_008466091.1 PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucumis melo]

3.20e-96

100

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Query:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLAQTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPS
        MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLAQTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPS
Subjt:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLAQTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPS

Query:  IRADTEGGNQRNDVPETFENREAMIGAVPVFDEPYIKVPKVLNKE
        IRADTEGGNQRNDVPETFENREAMIGAVPVFDEPYIKVPKVLNKE
Subjt:  IRADTEGGNQRNDVPETFENREAMIGAVPVFDEPYIKVPKVLNKE

XP_022143239.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Momordica charantia]

4.78e-78

82.99

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Query:  MGSKALPLLKGASSFPSLKRQIFISTAF--HSLPVSNITIRKSSTASGVLASLQPPDVPRLAQTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIE
        MGSKALPLLKGA S PSL+RQIFI   F  H+LP+S+  IRK ST   + ASLQPPDVPRLA+TARISLTPT+VEEFAPKI QVVDWFGQLQTVDLQSIE
Subjt:  MGSKALPLLKGASSFPSLKRQIFISTAF--HSLPVSNITIRKSSTASGVLASLQPPDVPRLAQTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIE

Query:  PSIRADTEGGNQRNDVPETFENREAMIGAVPVFDEPYIKVPKVLNKE
        PSIRADTEGGNQRND+ ETFENREAMIGAVPVFDEPYI+VPKVLNKE
Subjt:  PSIRADTEGGNQRNDVPETFENREAMIGAVPVFDEPYIKVPKVLNKE

XP_023521629.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo]

9.02e-78

84.14

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Query:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLAQTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPS
        M S AL LLKGASS PSL  QIFIST+ +SLPVSNI IRK STA G+ ASLQPPDVPRLA+TARISL P++VEEFAPKI QVVDWFGQLQ VDLQSIEPS
Subjt:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLAQTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPS

Query:  IRADTEGGNQRNDVPETFENREAMIGAVPVFDEPYIKVPKVLNKE
        IRADTEGGNQR+DV ETFENREAMIGAVPVFDEPYI+VPKVLNKE
Subjt:  IRADTEGGNQRNDVPETFENREAMIGAVPVFDEPYIKVPKVLNKE

XP_038897282.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Benincasa hispida]

8.77e-85

89.66

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Query:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLAQTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPS
        MGSKALPLLKGASS PSLK +IFIST  HSLP S I IRK STAS +LASLQPPDVPRLA+TARISLTPTQVEEFAPKI QVVDWFGQLQTVDLQSIEP+
Subjt:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLAQTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPS

Query:  IRADTEGGNQRNDVPETFENREAMIGAVPVFDEPYIKVPKVLNKE
        IRADTEGGNQRND+PETFENREAMIGAVPVFDEPYIKVPKVLNKE
Subjt:  IRADTEGGNQRNDVPETFENREAMIGAVPVFDEPYIKVPKVLNKE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LJU5 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

2.0e-69

95.17

Show/hide

Query:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLAQTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPS
        MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNI+IR SSTASG+ ASLQPPDVPRLAQTARISLTPTQ EEFAPKITQVVDWFGQLQTVDLQSIEPS
Subjt:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLAQTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPS

Query:  IRADTEGGNQRNDVPETFENREAMIGAVPVFDEPYIKVPKVLNKE
        IRADTEGG+QRND+PETFENREAMIGAVPVFDEPYIKVPKVLNKE
Subjt:  IRADTEGGNQRNDVPETFENREAMIGAVPVFDEPYIKVPKVLNKE

A0A1S3CQE8 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

1.9e-72

100

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Query:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLAQTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPS
        MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLAQTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPS
Subjt:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLAQTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPS

Query:  IRADTEGGNQRNDVPETFENREAMIGAVPVFDEPYIKVPKVLNKE
        IRADTEGGNQRNDVPETFENREAMIGAVPVFDEPYIKVPKVLNKE
Subjt:  IRADTEGGNQRNDVPETFENREAMIGAVPVFDEPYIKVPKVLNKE

A0A5A7T6R5 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

1.9e-72

100

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Query:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLAQTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPS
        MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLAQTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPS
Subjt:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLAQTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPS

Query:  IRADTEGGNQRNDVPETFENREAMIGAVPVFDEPYIKVPKVLNKE
        IRADTEGGNQRNDVPETFENREAMIGAVPVFDEPYIKVPKVLNKE
Subjt:  IRADTEGGNQRNDVPETFENREAMIGAVPVFDEPYIKVPKVLNKE

A0A6J1CQ90 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

1.2e-58

82.99

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Query:  MGSKALPLLKGASSFPSLKRQIFISTA--FHSLPVSNITIRKSSTASGVLASLQPPDVPRLAQTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIE
        MGSKALPLLKGA S PSL+RQIFI     FH+LP+S+  IRK ST   + ASLQPPDVPRLA+TARISLTPT+VEEFAPKI QVVDWFGQLQTVDLQSIE
Subjt:  MGSKALPLLKGASSFPSLKRQIFISTA--FHSLPVSNITIRKSSTASGVLASLQPPDVPRLAQTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIE

Query:  PSIRADTEGGNQRNDVPETFENREAMIGAVPVFDEPYIKVPKVLNKE
        PSIRADTEGGNQRND+ ETFENREAMIGAVPVFDEPYI+VPKVLNKE
Subjt:  PSIRADTEGGNQRNDVPETFENREAMIGAVPVFDEPYIKVPKVLNKE

A0A6J1FM33 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

2.0e-58

84.14

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Query:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLAQTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPS
        MGS AL LLKGASS PSL  QIFIST+ +SLPVS+I IRK STA G+ ASLQPPDVPRLA+TARISL P +VEEFAPKI QVVDWFGQLQ VDLQSIEPS
Subjt:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLAQTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPS

Query:  IRADTEGGNQRNDVPETFENREAMIGAVPVFDEPYIKVPKVLNKE
        IRADTEGGNQR+DV ETFENREAMIGAVPVFDEPYI+VPKVLNKE
Subjt:  IRADTEGGNQRNDVPETFENREAMIGAVPVFDEPYIKVPKVLNKE

SwissProt top hits

e value

%identity

Alignment

A2XK57 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

4.1e-32

64.15

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Query:  SSTASGVLASLQPPDVPRLAQTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGNQ-RNDVPETFENREAMIGAVPVFDEPYIKVP
        ++ A+    +L+PPD+PRLA  ARISL+P + EEFAPKI QVVDWFGQLQ VDL+S+EPS+RA T  GN  R D PETF NR+A+I +VP +D+PYIKVP
Subjt:  SSTASGVLASLQPPDVPRLAQTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGNQ-RNDVPETFENREAMIGAVPVFDEPYIKVP

Query:  KVLNKE
        +VLNKE
Subjt:  KVLNKE

B9INH0 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

1.0e-35

59.59

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Query:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNI-TIRKSSTASGVLASLQPPDVPRLAQTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEP
        MGS+A+ LLKG S  P     +F+       P  +I      +TA+G  +SL+PPDV RLA+TARISLTP QVEEF PKI QV+DW   L +VDL S+EP
Subjt:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNI-TIRKSSTASGVLASLQPPDVPRLAQTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEP

Query:  SIRADTEGGNQRNDVPETFENREAMIGAVPVFDEPYIKVPKVLNKE
        SIRADTEG N R+D PETFENREA+I AVP +++PY+KVPKVLNKE
Subjt:  SIRADTEGGNQRNDVPETFENREAMIGAVPVFDEPYIKVPKVLNKE

B9RRX2 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

1.9e-37

60.96

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Query:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSN-ITIRKSSTASGVLASLQPPDVPRLAQTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEP
        MGS+AL LLK A     LK QI         P S  +T R+ S  +   +SLQPPDV RLA+TARISL   +VEEFAPKI QV+DWFGQLQ VDL S+EP
Subjt:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSN-ITIRKSSTASGVLASLQPPDVPRLAQTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEP

Query:  SIRADTEGGNQRNDVPETFENREAMIGAVPVFDEPYIKVPKVLNKE
        +IRAD+EG N R+DVPETF  REA+I AVP +++PY+KVPKVLNKE
Subjt:  SIRADTEGGNQRNDVPETFENREAMIGAVPVFDEPYIKVPKVLNKE

D7STK2 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

1.8e-40

61.38

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Query:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLAQTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPS
        MGS+AL LLK  ++    +  +F S +      S   IR S+ +    ++L PPD+PRLA+TARISLTP +VEEFAPKI QV+DWFGQLQ VDLQSIEPS
Subjt:  MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLAQTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPS

Query:  IRADTEGGNQRNDVPETFENREAMIGAVPVFDEPYIKVPKVLNKE
        IRADTEG N R+D PETFENREA+I A+P ++EPY+KVPKVLNK+
Subjt:  IRADTEGGNQRNDVPETFENREAMIGAVPVFDEPYIKVPKVLNKE

Q7XZZ1 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

4.1e-32

64.15

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Query:  SSTASGVLASLQPPDVPRLAQTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGNQ-RNDVPETFENREAMIGAVPVFDEPYIKVP
        ++ A+    +L+PPD+PRLA  ARISL+P + EEFAPKI QVVDWFGQLQ VDL+S+EPS+RA T  GN  R D PETF NR+A+I +VP +D+PYIKVP
Subjt:  SSTASGVLASLQPPDVPRLAQTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGNQ-RNDVPETFENREAMIGAVPVFDEPYIKVP

Query:  KVLNKE
        +VLNKE
Subjt:  KVLNKE

Arabidopsis top hits

e value

%identity

Alignment

AT4G32915.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of translational fidelity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glu-tRNAGln amidotransferase, C subunit (InterPro:IPR003837); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

5.5e-32

56.76

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Query:  NITIRKSSTASGVLASLQPPDVPRLAQTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPETFENREAMIGAVPVFDEP
        N  I +S ++    + LQPPDV RLAQTARISLTP ++EE   KI +V+DWFGQLQ VD+ S+EP+IRA+ +GGN R D PETF+NR+++  ++P F++ 
Subjt:  NITIRKSSTASGVLASLQPPDVPRLAQTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPETFENREAMIGAVPVFDEP

Query:  YIKVPKVLNKE
        Y+KVPK+LNKE
Subjt:  YIKVPKVLNKE

Sequences

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CDS sequence

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ATGGGAAGTAAAGCTCTTCCTCTGCTCAAAGGAGCTTCATCATTCCCATCGTTAAAGCGCCAAATCTTCATCTCTACCGCCTTCCATTCCCTTCCTGTTTCCAACATCAC
AATCCGAAAGTCTTCGACTGCTTCAGGAGTTTTAGCTTCTCTTCAACCTCCTGATGTTCCTCGTTTAGCTCAAACAGCTCGAATCTCTCTCACTCCCACTCAGGTTGAAG
AATTTGCGCCTAAAATTACTCAAGTTGTTGACTGGTTTGGGCAGCTCCAGACAGTTGATCTTCAAAGTATTGAACCATCCATTAGAGCAGACACTGAAGGTGGCAATCAA
CGGAATGACGTTCCTGAAACATTTGAAAATAGAGAGGCCATGATTGGCGCAGTTCCAGTATTCGATGAGCCGTATATCAAAGTTCCCAAAGTTCTGAATAAGGAGTAG

mRNA sequence

Show/hide mRNA sequence

GTTCAACGATCATTTTTCTTAAAAAAAAAGTTTGAATCATTTATGATCTTGAGTTCTTAAAATGGGTGTTTTAGACAAATTGAATATTGTAAGGGTAACTTTAACTTGTA
GATGTGGCGCAACTCGTGAGGATTGTGATAGAGATTAGAGAAAGGGTCGAATATCAAAATTTGGCGAATAGATTTCATTTTGGTTTCCGCCATTAGTAGTTGGATCGAAA
TGGGAAGTAAAGCTCTTCCTCTGCTCAAAGGAGCTTCATCATTCCCATCGTTAAAGCGCCAAATCTTCATCTCTACCGCCTTCCATTCCCTTCCTGTTTCCAACATCACA
ATCCGAAAGTCTTCGACTGCTTCAGGAGTTTTAGCTTCTCTTCAACCTCCTGATGTTCCTCGTTTAGCTCAAACAGCTCGAATCTCTCTCACTCCCACTCAGGTTGAAGA
ATTTGCGCCTAAAATTACTCAAGTTGTTGACTGGTTTGGGCAGCTCCAGACAGTTGATCTTCAAAGTATTGAACCATCCATTAGAGCAGACACTGAAGGTGGCAATCAAC
GGAATGACGTTCCTGAAACATTTGAAAATAGAGAGGCCATGATTGGCGCAGTTCCAGTATTCGATGAGCCGTATATCAAAGTTCCCAAAGTTCTGAATAAGGAGTAGTTG
CTAAGGTTAGATTGGTTGTTTCATCTGTCTCATCATTCATTATTGGCATAGTCTTCAACACCTTATGTCATTGAAATGATTAATTCTGCTACAGGTTGTTACTACATGAT
ATTTGAATTAAAATTTGAACTAATCATCCATTAATCTTAACCTTAGTTCGAATGTGTAATTCATATCTAGCTAAGGGGGCGGATTACCACACATTCTTGTCGTCACATGA
GATATTTATCCAAAAAAATTCTCTGTTGCGAATGGGACCTGTCCTCATTATTTATCTTATCAACTCTCCTTGAAGAGATGATGGAGACATATTCAGGTTAATTTAATTTA
GCCTCATCATCTTAGTCTAAACTTAGATGAATCTTCCCC

Protein sequence

Show/hide protein sequence

MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLAQTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGNQ
RNDVPETFENREAMIGAVPVFDEPYIKVPKVLNKE

IVF0022272 (gene) of Melon (IVF77) v1 genome