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IVF0022333 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0022333
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 17.6
Genome locationchr06:17843217..17843506
RNA-Seq ExpressionIVF0022333
SyntenyIVF0022333
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040451.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]8.41e-2780.3Show/hide
Query:  MCDESDVVVGAMLGQKKDKVIHPIYYTSKTLNEAQEDHTSTEKELLVVIFAIEKYKSYIVGSKVMV
        MCD SDV VGAM+GQ+KDKVIHPI YTSKTLNE QE++T+TEKELL+V+FAIEKY+SYIVG+KVMV
Subjt:  MCDESDVVVGAMLGQKKDKVIHPIYYTSKTLNEAQEDHTSTEKELLVVIFAIEKYKSYIVGSKVMV
KAA0056421.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]2.35e-2759.57Show/hide
Query:  MCDESDVVVGAMLGQKKDKVIHPIYYTSKTLNEAQEDHTSTEKELLVVIFAIEKYKSYIVGSKVMVHIDLF---------------MDIVAPRI
        M DESDV VGAMLGQK+DK+IH   YTSKTLNE QE++T+T+KELL V+F IEKY+SYI+GSKV +H   F               MDI+APRI
Subjt:  MCDESDVVVGAMLGQKKDKVIHPIYYTSKTLNEAQEDHTSTEKELLVVIFAIEKYKSYIVGSKVMVHIDLF---------------MDIVAPRI
KAA0062295.1 hypothetical protein E6C27_scaffold154G00380 [Cucumis melo var. makuwa]5.83e-3077.46Show/hide
Query:  MCDESDVVVGAMLGQKKDKVIHPIYYTSKTLNEAQEDHTSTEKELLVVIFAIEKYKSYIVGSKVMVHIDLF
        MCD SDVV+GAMLGQK DKVI+PIY  SKTLNEAQE++T+TEKELL V+FAIEKY SYIVGSKV +H D F
Subjt:  MCDESDVVVGAMLGQKKDKVIHPIYYTSKTLNEAQEDHTSTEKELLVVIFAIEKYKSYIVGSKVMVHIDLF
KAA0062414.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]4.84e-2671.01Show/hide
Query:  MCDESDVVVGAMLGQKKDKVIHPIYYTSKTLNEAQEDHTSTEKELLVVIFAIEKYKSYIVGSKVMVHID
        MCD SDVVVG M GQKKDKV  PIYY  KTLNEA+E++T+ EKELL ++FAIEK++SYIVGSKV +H D
Subjt:  MCDESDVVVGAMLGQKKDKVIHPIYYTSKTLNEAQEDHTSTEKELLVVIFAIEKYKSYIVGSKVMVHID
TYK28899.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]8.41e-2780.3Show/hide
Query:  MCDESDVVVGAMLGQKKDKVIHPIYYTSKTLNEAQEDHTSTEKELLVVIFAIEKYKSYIVGSKVMV
        MCD SDV VGAM+GQ+KDKVIHPI YTSKTLNE QE++T+TEKELL+V+FAIEKY+SYIVG+KVMV
Subjt:  MCDESDVVVGAMLGQKKDKVIHPIYYTSKTLNEAQEDHTSTEKELLVVIFAIEKYKSYIVGSKVMV
TrEMBL top hitse value%identityAlignment
A0A5A7TFL9 Transposon Ty3-I Gag-Pol polyprotein5.4e-2180.3Show/hide
Query:  MCDESDVVVGAMLGQKKDKVIHPIYYTSKTLNEAQEDHTSTEKELLVVIFAIEKYKSYIVGSKVMV
        MCD SDV VGAM+GQ+KDKVIHPI YTSKTLNE QE++T+TEKELL+V+FAIEKY+SYIVG+KVMV
Subjt:  MCDESDVVVGAMLGQKKDKVIHPIYYTSKTLNEAQEDHTSTEKELLVVIFAIEKYKSYIVGSKVMV
A0A5A7US86 Retrovirus-related Pol polyprotein from transposon 17.63.0e-1959.57Show/hide
Query:  MCDESDVVVGAMLGQKKDKVIHPIYYTSKTLNEAQEDHTSTEKELLVVIFAIEKYKSYIVGSKVMVHIDLF---------------MDIVAPRI
        M DESDV VGAMLGQK+DK+IH   YTSKTLNE QE++T+T+KELL V+F IEKY+SYI+GSKV +H   F               MDI+APRI
Subjt:  MCDESDVVVGAMLGQKKDKVIHPIYYTSKTLNEAQEDHTSTEKELLVVIFAIEKYKSYIVGSKVMVHIDLF---------------MDIVAPRI
A0A5A7V8R9 RT_RNaseH domain-containing protein1.8e-2177.46Show/hide
Query:  MCDESDVVVGAMLGQKKDKVIHPIYYTSKTLNEAQEDHTSTEKELLVVIFAIEKYKSYIVGSKVMVHIDLF
        MCD SDVV+GAMLGQK DKVI+PIY  SKTLNEAQE++T+TEKELL V+FAIEKY SYIVGSKV +H D F
Subjt:  MCDESDVVVGAMLGQKKDKVIHPIYYTSKTLNEAQEDHTSTEKELLVVIFAIEKYKSYIVGSKVMVHIDLF
A0A5D3DS34 Retrovirus-related Pol polyprotein from transposon 17.68.6e-1971.01Show/hide
Query:  MCDESDVVVGAMLGQKKDKVIHPIYYTSKTLNEAQEDHTSTEKELLVVIFAIEKYKSYIVGSKVMVHID
        MCD SDVVVG M GQKKDKV  PIYY  KTLNEA+E++T+ EKELL ++FAIEK++SYIVGSKV +H D
Subjt:  MCDESDVVVGAMLGQKKDKVIHPIYYTSKTLNEAQEDHTSTEKELLVVIFAIEKYKSYIVGSKVMVHID
A0A5D3DZR6 Transposon Ty3-I Gag-Pol polyprotein5.4e-2180.3Show/hide
Query:  MCDESDVVVGAMLGQKKDKVIHPIYYTSKTLNEAQEDHTSTEKELLVVIFAIEKYKSYIVGSKVMV
        MCD SDV VGAM+GQ+KDKVIHPI YTSKTLNE QE++T+TEKELL+V+FAIEKY+SYIVG+KVMV
Subjt:  MCDESDVVVGAMLGQKKDKVIHPIYYTSKTLNEAQEDHTSTEKELLVVIFAIEKYKSYIVGSKVMV
SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.68.0e-0637.31Show/hide
Query:  DESDVVVGAMLGQKKDKVIHPIYYTSKTLNEAQEDHTSTEKELLVVIFAIEKYKSYIVGSKVMVHID
        D SDV +GA+L Q      HP+ Y S+TLNE + ++++ EKELL +++A + ++ Y++G    +  D
Subjt:  DESDVVVGAMLGQKKDKVIHPIYYTSKTLNEAQEDHTSTEKELLVVIFAIEKYKSYIVGSKVMVHID
P20825 Retrovirus-related Pol polyprotein from transposon 2975.2e-0532.84Show/hide
Query:  DESDVVVGAMLGQKKDKVIHPIYYTSKTLNEAQEDHTSTEKELLVVIFAIEKYKSYIVGSKVMVHID
        D S++ +GA+L Q      HPI + S+TLN+ + ++++ EKELL +++A + ++ Y++G + ++  D
Subjt:  DESDVVVGAMLGQKKDKVIHPIYYTSKTLNEAQEDHTSTEKELLVVIFAIEKYKSYIVGSKVMVHID
Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus5.2e-0533.33Show/hide
Query:  DESDVVVGAMLGQKKDKVIHPIYYTSKTLNEAQEDHTSTEKELLVVIFAIEKYKSYIVGS
        D S+  +GA+L Q       PI Y S++LN+ +E++ + EKE+L +I++++  ++Y+ G+
Subjt:  DESDVVVGAMLGQKKDKVIHPIYYTSKTLNEAQEDHTSTEKELLVVIFAIEKYKSYIVGS
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCGACGAAAGTGATGTAGTGGTAGGGGCTATGTTAGGTCAAAAGAAAGATAAAGTGATCCACCCTATATACTACACGAGTAAGACCTTGAATGAAGCTCAAGAGGA
TCATACATCCACAGAAAAGGAATTACTTGTCGTGATATTTGCAATTGAAAAGTACAAGAGTTACATTGTTGGCTCTAAAGTCATGGTACATATTGATCTTTTTATGGACA
TTGTTGCTCCAAGAATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGCGACGAAAGTGATGTAGTGGTAGGGGCTATGTTAGGTCAAAAGAAAGATAAAGTGATCCACCCTATATACTACACGAGTAAGACCTTGAATGAAGCTCAAGAGGA
TCATACATCCACAGAAAAGGAATTACTTGTCGTGATATTTGCAATTGAAAAGTACAAGAGTTACATTGTTGGCTCTAAAGTCATGGTACATATTGATCTTTTTATGGACA
TTGTTGCTCCAAGAATTTGA
Protein sequenceShow/hide protein sequence
MCDESDVVVGAMLGQKKDKVIHPIYYTSKTLNEAQEDHTSTEKELLVVIFAIEKYKSYIVGSKVMVHIDLFMDIVAPRI