CuGenDBv2

Gene ID	IVF0022338
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 isoform X1
Genome location	chr06:2090782..2093131
RNA-Seq Expression	IVF0022338
Synteny	IVF0022338
Gene Ontology terms	GO:0042793 - plastid transcription (biological process) GO:0000427 - plastid-encoded plastid RNA polymerase complex (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR038958 - Protein plastid transcriptionally active 7

Homology

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GenBank top hits

e value

%identity

Alignment

TYK11290.1 KH domain-containing protein [Cucumis melo var. makuwa]

2.93e-98

100

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Query:  FLPLRIEANPRISSALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAE
        FLPLRIEANPRISSALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAE
Subjt:  FLPLRIEANPRISSALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAE

Query:  AKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        AKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
Subjt:  AKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT

XP_004146231.1 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 [Cucumis sativus]

1.30e-102

96.77

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Query:  LPLRIEANPRISSALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEA
        LPLRIEANPRIS ALNFRPPFQ+VARKQ++GEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEA
Subjt:  LPLRIEANPRISSALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEA

Query:  KEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        KEYVESNRDEYGG+KKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
Subjt:  KEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT

XP_008455984.1 PREDICTED: protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 isoform X1 [Cucumis melo]

1.17e-105

99.36

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Query:  FLPLRIEANPRISSALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAE
        FLPLRIEANPRIS ALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAE
Subjt:  FLPLRIEANPRISSALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAE

Query:  AKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        AKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
Subjt:  AKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT

XP_016901917.1 PREDICTED: protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 isoform X2 [Cucumis melo]

1.33e-106

99.36

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Query:  MFLPLRIEANPRISSALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAA
        MFLPLRIEANPRIS ALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAA
Subjt:  MFLPLRIEANPRISSALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAA

Query:  EAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        EAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
Subjt:  EAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT

XP_038891427.1 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 [Benincasa hispida]

9.80e-98

93.55

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Query:  LPLRIEANPRISSALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEA
        LP RIE  PRIS A NFR PFQVVARKQRNGE SGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVR+VKEQGKLITMDIERLLLSEDNRFDFVNEVAAEA
Subjt:  LPLRIEANPRISSALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEA

Query:  KEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        KEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPH+LKQE+T
Subjt:  KEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L9J8 Uncharacterized protein

6.0e-79

96.77

Show/hide

Query:  LPLRIEANPRISSALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEA
        LPLRIEANPRIS ALNFRPPFQ+VARKQ++GEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEA
Subjt:  LPLRIEANPRISSALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEA

Query:  KEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        KEYVESNRDEYGG+KKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
Subjt:  KEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT

A0A1S3C3E7 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 isoform X1

2.9e-81

99.36

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Query:  FLPLRIEANPRISSALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAE
        FLPLRIEANPRIS ALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAE
Subjt:  FLPLRIEANPRISSALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAE

Query:  AKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        AKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
Subjt:  AKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT

A0A1S4E109 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 isoform X2

7.5e-82

99.36

Show/hide

Query:  MFLPLRIEANPRISSALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAA
        MFLPLRIEANPRIS ALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAA
Subjt:  MFLPLRIEANPRISSALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAA

Query:  EAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        EAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
Subjt:  EAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT

A0A5A7U3Y9 KH domain-containing protein

2.9e-81

99.36

Show/hide

Query:  FLPLRIEANPRISSALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAE
        FLPLRIEANPRIS ALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAE
Subjt:  FLPLRIEANPRISSALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAE

Query:  AKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        AKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
Subjt:  AKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT

A0A5D3CIV3 KH domain-containing protein

7.5e-82

100

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Query:  FLPLRIEANPRISSALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAE
        FLPLRIEANPRISSALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAE
Subjt:  FLPLRIEANPRISSALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAE

Query:  AKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        AKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
Subjt:  AKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT

SwissProt top hits

e value

%identity

Alignment

Q8VZV9 Protein PLASTID TRANSCRIPTIONALLY ACTIVE 7

4.5e-47

67.14

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Query:  NFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSK
        N R  FQ         + +GRRVWRRR LTKKDDM  YKM R+PF+EEQVR+++E GK++TMDIE+LLL EDNRF+FVN VAAEA EYV+ NRDEYGGSK
Subjt:  NFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSK

Query:  KAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        KAI HVLSNRVND GF RP+AY E DP+KPGP YL + +T
Subjt:  KAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT

Arabidopsis top hits

e value

%identity

Alignment

AT5G24314.1 plastid transcriptionally active7

3.2e-48

67.14

Show/hide

Query:  NFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSK
        N R  FQ         + +GRRVWRRR LTKKDDM  YKM R+PF+EEQVR+++E GK++TMDIE+LLL EDNRF+FVN VAAEA EYV+ NRDEYGGSK
Subjt:  NFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSK

Query:  KAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        KAI HVLSNRVND GF RP+AY E DP+KPGP YL + +T
Subjt:  KAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT

AT5G24314.2 plastid transcriptionally active7

5.0e-46

63.51

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Query:  NFRPPFQVVARKQRNGEVSGRRVWRRRK--------LTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVESN
        N R  FQ         + +GRRVWRRR         LTKKDDM  YKM R+PF+EEQVR+++E GK++TMDIE+LLL EDNRF+FVN VAAEA EYV+ N
Subjt:  NFRPPFQVVARKQRNGEVSGRRVWRRRK--------LTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVESN

Query:  RDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        RDEYGGSKKAI HVLSNRVND GF RP+AY E DP+KPGP YL + +T
Subjt:  RDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAAGATAGGACAGCCATGGCCACTCCAATCTCAACACTCTCCTTTGCTTCCCTGTAATCACTCTCCCTGTTTGATTCTTCGTCCAATGTTTTTGCCGCTCAGGATTGA
GGCGAATCCCAGAATTTCTTCTGCCTTGAACTTCCGTCCCCCGTTTCAGGTGGTCGCTAGAAAACAGAGAAATGGTGAAGTTAGTGGTCGGCGAGTGTGGCGACGAAGAA
AATTGACAAAGAAGGATGACATGTCGATCTACAAAATGGATCGAATCCCATTCCTTGAAGAACAGGTAAGGAGGGTAAAGGAACAGGGAAAGCTCATCACAATGGACATT
GAAAGACTATTATTATCAGAGGACAACCGCTTTGATTTTGTGAATGAGGTTGCAGCTGAGGCCAAGGAATATGTCGAGAGCAACCGCGATGAATATGGGGGTTCCAAGAA
AGCCATTCTTCATGTTCTCAGCAACCGTGTGAACGATGCAGGGTTTTATAGGCCAGATGCTTATGCTGAAGATGACCCATTTAAACCGGGACCTCATTATCTGAAACAAG
AATTTACTTGA

mRNA sequence

Show/hide mRNA sequence

GAGAGCTCGCGTGTATCCACTCGAAAGTAATAATATCATTCGAAAATGAAGATAGGACAGCCATGGCCACTCCAATCTCAACACTCTCCTTTGCTTCCCTGTAATCACTC
TCCCTGTTTGATTCTTCGTCCAATGTTTTTGCCGCTCAGGATTGAGGCGAATCCCAGAATTTCTTCTGCCTTGAACTTCCGTCCCCCGTTTCAGGTGGTCGCTAGAAAAC
AGAGAAATGGTGAAGTTAGTGGTCGGCGAGTGTGGCGACGAAGAAAATTGACAAAGAAGGATGACATGTCGATCTACAAAATGGATCGAATCCCATTCCTTGAAGAACAG
GTAAGGAGGGTAAAGGAACAGGGAAAGCTCATCACAATGGACATTGAAAGACTATTATTATCAGAGGACAACCGCTTTGATTTTGTGAATGAGGTTGCAGCTGAGGCCAA
GGAATATGTCGAGAGCAACCGCGATGAATATGGGGGTTCCAAGAAAGCCATTCTTCATGTTCTCAGCAACCGTGTGAACGATGCAGGGTTTTATAGGCCAGATGCTTATG
CTGAAGATGACCCATTTAAACCGGGACCTCATTATCTGAAACAAGAATTTACTTGAACAATTTGATTACAAAATCCATTTTCTTATACAGACTGTCAATGCATTAATCTG
ATTTTTCCAGTCTTTAAATGTTAGTGCCTTTGTCTCTTCTGATTAAGAATTGCGCTTGCCTCATGAGTTTTTTTCTAACCAAATATAGCTCTTTAAACTGCTACTTTTCT
ATTCGTTATGTTTCATCCAACATTCCCAAAAGGAGGGAAGATTATTATCGACAAACTTTTGAAACCATTAGAAAGTTGCTTTTATGAAC

Protein sequence

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MKIGQPWPLQSQHSPLLPCNHSPCLILRPMFLPLRIEANPRISSALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDI
ERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT

IVF0022338 (gene) of Melon (IVF77) v1 genome