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IVF0022358 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0022358
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr06:4509086..4509265
RNA-Seq ExpressionIVF0022358
SyntenyIVF0022358
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037133.1 retrotransposon protein [Cucumis melo var. makuwa]1.31e-24100Show/hide
Query:  MATIWVSSPWVSSTEKKGRGDEKNGVKVGVFIMRRSLFVRGGILKKERGV
        MATIWVSSPWVSSTEKKGRGDEKNGVKVGVFIMRRSLFVRGGILKKERGV
Subjt:  MATIWVSSPWVSSTEKKGRGDEKNGVKVGVFIMRRSLFVRGGILKKERGV
KAA0044825.1 transcription factor bHLH36-like [Cucumis melo var. makuwa]3.05e-1777.55Show/hide
Query:  VSSTEKKGRGDEKNGVKVGVFIMRRSLFVRGGILKKERGVCVKKEMEEF
        VS  +KKGRGDEKNGVKVGVF+M RS FVRGG+LKK+RGV VKKE E F
Subjt:  VSSTEKKGRGDEKNGVKVGVFIMRRSLFVRGGILKKERGVCVKKEMEEF
KAA0048509.1 CMP-sialic acid transporter 4 isoform X2 [Cucumis melo var. makuwa]2.93e-0983.87Show/hide
Query:  TIWVSSPWVSSTEKKGRGDEKNGVKVGVFIM
        TIWVSSPWVS  EKKGRGDEKNGVKV VF++
Subjt:  TIWVSSPWVSSTEKKGRGDEKNGVKVGVFIM
KAA0054034.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.63e-1979.59Show/hide
Query:  IWVSSPWVSSTEKKGRGDEKNGVKVGVFIMRRSLFVRGGILKKERGVCV
        +WVSSPWVS  +KKGRGDEKNG KVGVF+MRRS FVR GILKKE GVC+
Subjt:  IWVSSPWVSSTEKKGRGDEKNGVKVGVFIMRRSLFVRGGILKKERGVCV
TYJ96889.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]5.77e-1876.92Show/hide
Query:  IWVSSPWVSSTEKKGRGDEKNGVKVGVFIMRRSLFVRGGILKKERGVCVKKE
        +WVSSPWVS  +KKGRGDEKNG KVGVF+MRRS FVR GILKKE GV   KE
Subjt:  IWVSSPWVSSTEKKGRGDEKNGVKVGVFIMRRSLFVRGGILKKERGVCVKKE
TrEMBL top hitse value%identityAlignment
A0A5A7T2E4 Retrotransposon protein1.7e-19100Show/hide
Query:  MATIWVSSPWVSSTEKKGRGDEKNGVKVGVFIMRRSLFVRGGILKKERGV
        MATIWVSSPWVSSTEKKGRGDEKNGVKVGVFIMRRSLFVRGGILKKERGV
Subjt:  MATIWVSSPWVSSTEKKGRGDEKNGVKVGVFIMRRSLFVRGGILKKERGV
A0A5A7TTV0 Transcription factor bHLH36-like9.9e-1277.55Show/hide
Query:  VSSTEKKGRGDEKNGVKVGVFIMRRSLFVRGGILKKERGVCVKKEMEEF
        VS  +KKGRGDEKNGVKVGVF+M RS FVRGG+LKK+RGV VKKE E F
Subjt:  VSSTEKKGRGDEKNGVKVGVFIMRRSLFVRGGILKKERGVCVKKEMEEF
A0A5A7U4Z1 CMP-sialic acid transporter 4 isoform X24.8e-0683.87Show/hide
Query:  TIWVSSPWVSSTEKKGRGDEKNGVKVGVFIM
        TIWVSSPWVS  EKKGRGDEKNGVKV VF++
Subjt:  TIWVSSPWVSSTEKKGRGDEKNGVKVGVFIM
A0A5A7UFR0 Ty3-gypsy retrotransposon protein2.1e-1478Show/hide
Query:  IWVSSPWVSSTEKKGRGDEKNGVKVGVFIMRRSLFVRGGILKKERGVCVK
        +WVSSPWVS  +KKGRGDEKNG KVGVF+MRRS FVR GILKKE GVC++
Subjt:  IWVSSPWVSSTEKKGRGDEKNGVKVGVFIMRRSLFVRGGILKKERGVCVK
A0A5D3BCV7 Ty3-gypsy retrotransposon protein3.1e-1376.92Show/hide
Query:  IWVSSPWVSSTEKKGRGDEKNGVKVGVFIMRRSLFVRGGILKKERGVCVKKE
        +WVSSPWVS  +KKGRGDEKNG KVGVF+MRRS FVR GILKKE GV   KE
Subjt:  IWVSSPWVSSTEKKGRGDEKNGVKVGVFIMRRSLFVRGGILKKERGVCVKKE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACGATATGGGTCTCCTCGCCGTGGGTCTCTAGCACCGAGAAGAAAGGACGTGGAGATGAGAAGAATGGGGTTAAGGTTGGGGTTTTCATCATGCGTCGTTCGTT
GTTCGTGAGGGGAGGGATTTTGAAGAAGGAAAGGGGAGTGTGCGTGAAGAAGGAAATGGAGGAATTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGACGATATGGGTCTCCTCGCCGTGGGTCTCTAGCACCGAGAAGAAAGGACGTGGAGATGAGAAGAATGGGGTTAAGGTTGGGGTTTTCATCATGCGTCGTTCGTT
GTTCGTGAGGGGAGGGATTTTGAAGAAGGAAAGGGGAGTGTGCGTGAAGAAGGAAATGGAGGAATTTTGA
Protein sequenceShow/hide protein sequence
MATIWVSSPWVSSTEKKGRGDEKNGVKVGVFIMRRSLFVRGGILKKERGVCVKKEMEEF