; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0022381 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0022381
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy1-copia retrotransposon protein
Genome locationchr01:15556428..15556694
RNA-Seq ExpressionIVF0022381
SyntenyIVF0022381
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049696.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]5.55e-44100Show/hide
Query:  MLREWTLYRQVSNVATFIIVDVHVNVGNNVRLTHSPNVGFGFTPMFQDGRRNLRRHKHIADVIWFRVGFPYSDT
        MLREWTLYRQVSNVATFIIVDVHVNVGNNVRLTHSPNVGFGFTPMFQDGRRNLRRHKHIADVIWFRVGFPYSDT
Subjt:  MLREWTLYRQVSNVATFIIVDVHVNVGNNVRLTHSPNVGFGFTPMFQDGRRNLRRHKHIADVIWFRVGFPYSDT
TrEMBL top hitse value%identityAlignment
A0A5A7U6B5 Ty1-copia retrotransposon protein1.3e-36100Show/hide
Query:  MLREWTLYRQVSNVATFIIVDVHVNVGNNVRLTHSPNVGFGFTPMFQDGRRNLRRHKHIADVIWFRVGFPYSDT
        MLREWTLYRQVSNVATFIIVDVHVNVGNNVRLTHSPNVGFGFTPMFQDGRRNLRRHKHIADVIWFRVGFPYSDT
Subjt:  MLREWTLYRQVSNVATFIIVDVHVNVGNNVRLTHSPNVGFGFTPMFQDGRRNLRRHKHIADVIWFRVGFPYSDT
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTCGGGAGTGGACCCTTTATCGCCAAGTGTCCAACGTGGCAACGTTCATTATTGTCGACGTACATGTGAACGTCGGCAATAATGTTAGGCTGACGCATTCACCGAA
CGTCGGGTTTGGCTTCACCCCAATGTTTCAAGATGGTCGGCGAAACCTGCGTCGGCATAAGCATATTGCCGACGTCATCTGGTTTCGCGTCGGTTTTCCTTATTCCGACA
CAGTACTGCCGACACCCTCCCCAACGTGCCTCTATGCGTCGGGATAG
mRNA sequenceShow/hide mRNA sequence
ATGCTTCGGGAGTGGACCCTTTATCGCCAAGTGTCCAACGTGGCAACGTTCATTATTGTCGACGTACATGTGAACGTCGGCAATAATGTTAGGCTGACGCATTCACCGAA
CGTCGGGTTTGGCTTCACCCCAATGTTTCAAGATGGTCGGCGAAACCTGCGTCGGCATAAGCATATTGCCGACGTCATCTGGTTTCGCGTCGGTTTTCCTTATTCCGACA
CAGTACTGCCGACACCCTCCCCAACGTGCCTCTATGCGTCGGGATAG
Protein sequenceShow/hide protein sequence
MLREWTLYRQVSNVATFIIVDVHVNVGNNVRLTHSPNVGFGFTPMFQDGRRNLRRHKHIADVIWFRVGFPYSDTVLPTPSPTCLYASG