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IVF0022412 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0022412
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionDNA-directed RNA polymerases I and III subunit RPAC2
Genome locationchr12:1398208..1403146
RNA-Seq ExpressionIVF0022412
SyntenyIVF0022412
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0005736 - RNA polymerase I complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR008193 - DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site
IPR009025 - DNA-directed RNA polymerase, RBP11-like dimerisation domain
IPR033898 - DNA-directed RNA polymerases I and III subunit AC19
IPR036603 - RNA polymerase, RBP11-like subunit


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031779.1 DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis melo var. makuwa]7.38e-7399.07Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEE
        MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEE
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEE

Query:  PEGDINIE
        PEGDI+IE
Subjt:  PEGDINIE

XP_004145267.1 DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis sativus]3.39e-6996.26Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEE
        MEHGSFTDETKSTFSMADEDHTLANALR TLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTK KE+
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEE

Query:  PEGDINI
        P GDINI
Subjt:  PEGDINI

XP_008457416.1 PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis melo]1.27e-73100Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEE
        MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEE
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEE

Query:  PEGDINIE
        PEGDINIE
Subjt:  PEGDINIE

XP_023522054.1 DNA-directed RNA polymerases I and III subunit RPAC2-like [Cucurbita pepo subsp. pepo]1.08e-6289.72Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEE
        MEHGSFTDETKSTFSMADEDHTLAN++RYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLM VCQHVRNT DKAVLD  LTK    
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEE

Query:  PEGDINI
        P GDINI
Subjt:  PEGDINI

XP_038893936.1 DNA-directed RNA polymerases I and III subunit RPAC2 [Benincasa hispida]3.92e-6593.46Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEE
        MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLD  LTK    
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEE

Query:  PEGDINI
        P GDINI
Subjt:  PEGDINI

TrEMBL top hitse value%identityAlignment
A0A0A0LV21 RNA_pol_L_2 domain-containing protein2.1e-5295.37Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEE
        MEHGSFTDETKSTFSMADEDHTLANALR TLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTK KE+
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEE

Query:  PEGDINIE
        P GDINI+
Subjt:  PEGDINIE

A0A1S3C5G1 DNA-directed RNA polymerases I and III subunit RPAC29.2e-56100Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEE
        MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEE
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEE

Query:  PEGDINIE
        PEGDINIE
Subjt:  PEGDINIE

A0A5A7SR68 DNA-directed RNA polymerases I and III subunit RPAC23.5e-5599.07Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEE
        MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEE
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEE

Query:  PEGDINIE
        PEGDI+IE
Subjt:  PEGDINIE

A0A5D3BBZ7 DNA-directed RNA polymerases I and III subunit RPAC29.2e-56100Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEE
        MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEE
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEE

Query:  PEGDINIE
        PEGDINIE
Subjt:  PEGDINIE

A0A6J1D9Q8 DNA-directed RNA polymerases I and III subunit RPAC22.1e-4788.89Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEE
        MEHGSF+DE+KSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGD AREVLKD+CQNLMVVCQHVRNTFDK+VLDF LTK    
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEE

Query:  PEGDINIE
        P GDINI+
Subjt:  PEGDINIE

SwissProt top hitse value%identityAlignment
P0DPB6 DNA-directed RNA polymerases I and III subunit RPAC26.2e-1742.86Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGD-PAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKA
        M   + TD    TF + +EDHTL N+LRY + ++P V FCGY+  HPS++++N+R+QT G  PA E  +     LM VCQHV + F+ ++ D+   KA
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGD-PAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKA

P97304 DNA-directed RNA polymerases I and III subunit RPAC24.8e-1742.72Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGD-PAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKA-K
        M   + TD    TF + +EDHTL N LRY + ++P V FCGY+  HPS++++N+R+QT G  PA E  +     L+ VCQHV   F+ ++ D+   KA K
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGD-PAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKA-K

Query:  EEP
        +EP
Subjt:  EEP

Q1RMG8 DNA-directed RNA polymerases I and III subunit RPAC22.4e-1641.84Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGD-PAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKA
        M   + TD    TF + +EDHTL N+LRY + ++P V FCGY+  HPS++++N+R+QT G  PA E  +    +LM VCQHV + F+ ++ ++   KA
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGD-PAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKA

Q5XK67 DNA-directed RNA polymerases I and III subunit RPAC23.6e-1745.56Show/hide
Query:  DETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQT-TGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTK
        +E+  TF + +EDHTL N+LRY + ++P V FCGYSI HPS+ ++N R+QT  G PA E  +     L+ VCQHV NTF+ ++ ++   K
Subjt:  DETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQT-TGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTK

Q6DRI4 DNA-directed RNA polymerases I and III subunit RPAC23.1e-1646.81Show/hide
Query:  DETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQT-TGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEE
        DE   TF + +EDHTL N+LRY + +   V FCGYSI HPS++++N R+QT  G PA E L++   NL  VC+HV  TF+  + +F   K +EE
Subjt:  DETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQT-TGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEE

Arabidopsis top hitse value%identityAlignment
AT2G29540.1 RNApolymerase 14 kDa subunit8.3e-3364.08Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDF-NLTKAKE
        MEHGSFT+ + ++F++++EDHTLANA+R+ LNQDPRVT   Y+IPHPS  +VNIRVQTTGDPAREV KDACQ LM + +HVR+ FDKAV ++ +  K KE
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDF-NLTKAKE

Query:  EPE
        E E
Subjt:  EPE

AT2G29540.2 RNApolymerase 14 kDa subunit8.3e-3364.08Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDF-NLTKAKE
        MEHGSFT+ + ++F++++EDHTLANA+R+ LNQDPRVT   Y+IPHPS  +VNIRVQTTGDPAREV KDACQ LM + +HVR+ FDKAV ++ +  K KE
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDF-NLTKAKE

Query:  EPE
        E E
Subjt:  EPE

AT2G29540.3 RNApolymerase 14 kDa subunit8.9e-1965.22Show/hide
Query:  PRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDF-NLTKAKEEPE
        PRVT   Y+IPHPS  +VNIRVQTTGDPAREV KDACQ LM + +HVR+ FDKAV ++ +  K KEE E
Subjt:  PRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDF-NLTKAKEEPE

AT3G52090.1 DNA-directed RNA polymerase, RBP11-like3.2e-0829.79Show/hide
Query:  SFTDETK----STFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPA-REVLKDACQNLMVVCQHVRNTFDKAVLDFN
        S+  +TK    ++F++  EDHT+ N +R  L++D  V F GY +PHP   ++ +R+ TT   +  +    A  +L     +++N F+  V  F+
Subjt:  SFTDETK----STFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPA-REVLKDACQNLMVVCQHVRNTFDKAVLDFN

AT3G52090.2 DNA-directed RNA polymerase, RBP11-like1.1e-0536.36Show/hide
Query:  SFTDETK----STFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVV
        S+  +TK    ++F++  EDHT+ N +R  L++D  V F GY +PHP   ++ +R     DP     KD  +NL VV
Subjt:  SFTDETK----STFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACATGGATCCTTTACAGATGAGACCAAATCAACATTTTCTATGGCTGATGAAGATCATACACTTGCAAATGCTCTCAGATACACTTTGAATCAAGATCCAAGAGT
GACATTCTGTGGGTACAGCATCCCTCATCCTTCAGATAATCGAGTTAATATTAGAGTCCAGACAACAGGTGATCCTGCTAGAGAAGTTTTGAAAGATGCTTGTCAGAACT
TGATGGTGGTGTGTCAGCATGTGAGGAACACATTTGACAAGGCTGTGCTTGATTTCAATCTCACCAAAGCAAAAGAAGAACCTGAGGGAGACATTAATATCGAATAG
mRNA sequenceShow/hide mRNA sequence
CTTTAGCGCATTCAATCCCCCTTCGACAGTTCGACGTTCACATTTCGTAATCCCTTCGGCGATAAAATTCCGGCGACCTTTACATTCCGCCGGCGGCCTTTGCACATTTA
GATCGTAAGTTCGACGGCACGATTCGCCTTTACACTTTCCAATCGCAAGTTCGACGGACTTCACATTCTGGGTTCTTCATCTTGTTTTGTCGGGTTCTTCATCTTGTTTT
GTCCAAGCAATGGAACATGGATCCTTTACAGATGAGACCAAATCAACATTTTCTATGGCTGATGAAGATCATACACTTGCAAATGCTCTCAGATACACTTTGAATCAAGA
TCCAAGAGTGACATTCTGTGGGTACAGCATCCCTCATCCTTCAGATAATCGAGTTAATATTAGAGTCCAGACAACAGGTGATCCTGCTAGAGAAGTTTTGAAAGATGCTT
GTCAGAACTTGATGGTGGTGTGTCAGCATGTGAGGAACACATTTGACAAGGCTGTGCTTGATTTCAATCTCACCAAAGCAAAAGAAGAACCTGAGGGAGACATTAATATC
GAATAGAATGGGACCTTTGTTTTTTCTTTGCCTTGTAATTTTACCCTTTTTTTTTTTGTTAGTTTACAGTTTATTGAGATGGATTTGTTAGAAACAGATTAATTCCATTG
AATTTTGCTTGCGTTTATTGGTACTCAACTGAGAGCTTATCCCTCCCTTCAGGGGTTTCATGTTAAAT
Protein sequenceShow/hide protein sequence
MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEEPEGDINIE