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IVF0022447 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0022447
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionATP-dependent RNA helicase, putative
Genome locationchr11:28558681..28559476
RNA-Seq ExpressionIVF0022447
SyntenyIVF0022447
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
GO:0003724 - RNA helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR027417 - P-loop containing nucleoside triphosphate hydrolase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057022.1 putative pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 isoform X1 [Cucumis melo var. makuwa]2.25e-3877.27Show/hide
Query:  QAVASRVAEEMGVKLGEEVGYTIRFEDLTNPC---------GLVFLELKD---------IMVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATIEA
        QAVASRVAEEMGVKLGEEVGYTIRFEDLTNP          G++  E+ D         IMVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATIEA
Subjt:  QAVASRVAEEMGVKLGEEVGYTIRFEDLTNPC---------GLVFLELKD---------IMVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATIEA

Query:  KSMSTFFQMS
        KSMSTFFQMS
Subjt:  KSMSTFFQMS

XP_004148780.1 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 [Cucumis sativus]2.51e-3877.27Show/hide
Query:  QAVASRVAEEMGVKLGEEVGYTIRFEDLTNPC---------GLVFLELKD---------IMVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATIEA
        QAVASRVAEEMGVKLGEEVGYTIRFEDLTNP          G++  E+ D         IMVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATIEA
Subjt:  QAVASRVAEEMGVKLGEEVGYTIRFEDLTNPC---------GLVFLELKD---------IMVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATIEA

Query:  KSMSTFFQMS
        KSMSTFFQMS
Subjt:  KSMSTFFQMS

XP_008442967.1 PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 isoform X1 [Cucumis melo]2.50e-3877.27Show/hide
Query:  QAVASRVAEEMGVKLGEEVGYTIRFEDLTNPC---------GLVFLELKD---------IMVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATIEA
        QAVASRVAEEMGVKLGEEVGYTIRFEDLTNP          G++  E+ D         IMVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATIEA
Subjt:  QAVASRVAEEMGVKLGEEVGYTIRFEDLTNPC---------GLVFLELKD---------IMVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATIEA

Query:  KSMSTFFQMS
        KSMSTFFQMS
Subjt:  KSMSTFFQMS

XP_008442975.1 PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 isoform X2 [Cucumis melo]6.56e-3877.06Show/hide
Query:  AVASRVAEEMGVKLGEEVGYTIRFEDLTNPC---------GLVFLELKD---------IMVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATIEAK
        AVASRVAEEMGVKLGEEVGYTIRFEDLTNP          G++  E+ D         IMVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATIEAK
Subjt:  AVASRVAEEMGVKLGEEVGYTIRFEDLTNPC---------GLVFLELKD---------IMVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATIEAK

Query:  SMSTFFQMS
        SMSTFFQMS
Subjt:  SMSTFFQMS

XP_021907730.1 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 [Carica papaya]2.92e-3874.07Show/hide
Query:  QAVASRVAEEMGVKLGEEVGYTIRFEDLTNPC---------GLVFLELKD---------IMVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATIEA
        Q+VASRVAEEMGVKLGEEVGYTIRFEDLTNP          G++  E+ D         IMVDEAHERSISTD+LLGLLKKIQRRRPDLRLIISSATIEA
Subjt:  QAVASRVAEEMGVKLGEEVGYTIRFEDLTNPC---------GLVFLELKD---------IMVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATIEA

Query:  KSMSTFFQ
        KSMS FFQ
Subjt:  KSMSTFFQ

TrEMBL top hitse value%identityAlignment
A0A0A0LV75 Uncharacterized protein1.5e-3169.84Show/hide
Query:  QAVASRVAEEMGVKLGEEVGYTIRFEDLTNP---------CGLVFLELKD---------IMVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATIEA
        QAVASRVAEEMGVKLGEEVGYTIRFEDLTNP          G++  E+ D         IMVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATIEA
Subjt:  QAVASRVAEEMGVKLGEEVGYTIRFEDLTNP---------CGLVFLELKD---------IMVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATIEA

Query:  KSMSTFFQMSLCFLSKKRKKTLKSRS
        KSMSTFFQMS      KR++ L+  +
Subjt:  KSMSTFFQMSLCFLSKKRKKTLKSRS

A0A1S3B6Y9 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 isoform X18.7e-3269.84Show/hide
Query:  QAVASRVAEEMGVKLGEEVGYTIRFEDLTNP---------CGLVFLELKD---------IMVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATIEA
        QAVASRVAEEMGVKLGEEVGYTIRFEDLTNP          G++  E+ D         IMVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATIEA
Subjt:  QAVASRVAEEMGVKLGEEVGYTIRFEDLTNP---------CGLVFLELKD---------IMVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATIEA

Query:  KSMSTFFQMSLCFLSKKRKKTLKSRS
        KSMSTFFQMS      KR++ L+  +
Subjt:  KSMSTFFQMSLCFLSKKRKKTLKSRS

A0A1S3B7Q6 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 isoform X23.3e-3169.6Show/hide
Query:  AVASRVAEEMGVKLGEEVGYTIRFEDLTNP---------CGLVFLELKD---------IMVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATIEAK
        AVASRVAEEMGVKLGEEVGYTIRFEDLTNP          G++  E+ D         IMVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATIEAK
Subjt:  AVASRVAEEMGVKLGEEVGYTIRFEDLTNP---------CGLVFLELKD---------IMVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATIEAK

Query:  SMSTFFQMSLCFLSKKRKKTLKSRS
        SMSTFFQMS      KR++ L+  +
Subjt:  SMSTFFQMSLCFLSKKRKKTLKSRS

A0A5A7UME2 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 isoform X18.7e-3269.84Show/hide
Query:  QAVASRVAEEMGVKLGEEVGYTIRFEDLTNP---------CGLVFLELKD---------IMVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATIEA
        QAVASRVAEEMGVKLGEEVGYTIRFEDLTNP          G++  E+ D         IMVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATIEA
Subjt:  QAVASRVAEEMGVKLGEEVGYTIRFEDLTNP---------CGLVFLELKD---------IMVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATIEA

Query:  KSMSTFFQMSLCFLSKKRKKTLKSRS
        KSMSTFFQMS      KR++ L+  +
Subjt:  KSMSTFFQMSLCFLSKKRKKTLKSRS

A0A6J1GTZ5 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 isoform X11.6e-3068.25Show/hide
Query:  QAVASRVAEEMGVKLGEEVGYTIRFEDLTNP---------CGLVFLELKD---------IMVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATIEA
        QAVASRVAEEMGVKLGEEVGYTIRFEDLTNP          G++  E+ D         IMVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATIEA
Subjt:  QAVASRVAEEMGVKLGEEVGYTIRFEDLTNP---------CGLVFLELKD---------IMVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATIEA

Query:  KSMSTFFQMSLCFLSKKRKKTLKSRS
        K+MSTFFQ S      KR++ L+  +
Subjt:  KSMSTFFQMSLCFLSKKRKKTLKSRS

SwissProt top hitse value%identityAlignment
F4IJV4 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH66.3e-1947.83Show/hide
Query:  IISQAVASRVAEEMGVKLGEEVGYTIRFEDLTN--------PCGLVFLEL---------KDIMVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATI
        + + +VA+RVA+EMG KLG EVGY+IRFED T+          G++  EL           I+VDEAHER++ TD+L GL+K I R RPDL+L+ISSAT+
Subjt:  IISQAVASRVAEEMGVKLGEEVGYTIRFEDLTN--------PCGLVFLEL---------KDIMVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATI

Query:  EAKSMSTFFQMSLCF
        +A+  S FF  +  F
Subjt:  EAKSMSTFFQMSLCF

F4JMJ3 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH87.4e-2044.27Show/hide
Query:  IISQAVASRVAEEMGVKLGEEVGYTIRFEDLTN--------PCGLVFLEL---------KDIMVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATI
        + + +VASRVA+E+GVKLG EVGY+IRFED T+          G++  EL           I++DEAHER++STD+L  L+K + + RPDLRLIISSAT+
Subjt:  IISQAVASRVAEEMGVKLGEEVGYTIRFEDLTN--------PCGLVFLEL---------KDIMVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATI

Query:  EAKSMSTFFQMSLCFLSKKRKKTLKSRSKTC
        EAK  S +F  +  +L   R+  ++   + C
Subjt:  EAKSMSTFFQMSLCFLSKKRKKTLKSRSKTC

F4JRJ6 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH93.7e-2764.55Show/hide
Query:  QAVASRVAEEMGVKLGEEVGYTIRFEDLTN---------PCGLVFLELKD---------IMVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATIEA
        QAV++RVAEEMGV LGEEVGYTIRFED T            G++  E+ +         IM+DEAHERSISTD+LLGLLKKIQRRRP+LRLIISSATIEA
Subjt:  QAVASRVAEEMGVKLGEEVGYTIRFEDLTN---------PCGLVFLELKD---------IMVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATIEA

Query:  KSMSTFFQMS
        K+MS FF  S
Subjt:  KSMSTFFQMS

Q38953 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH51.3e-1949.54Show/hide
Query:  IISQAVASRVAEEMGVKLGEEVGYTIRFEDLTNP--------CGLVFLEL---------KDIMVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATI
        + + +VA RVAEE G +LGEEVGY IRFED T P         G++  E+           IM+DEAHER+I TD+L GLLKK+ +RR DLRLI++SAT+
Subjt:  IISQAVASRVAEEMGVKLGEEVGYTIRFEDLTNP--------CGLVFLEL---------KDIMVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATI

Query:  EAKSMSTFF
        +A+  S +F
Subjt:  EAKSMSTFF

Q8VY00 Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH11.6e-1947.83Show/hide
Query:  IISQAVASRVAEEMGVKLGEEVGYTIRFEDLTN--------PCGLVFLEL---------KDIMVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATI
        + + +VA+RVA+EMGVKLG EVGY+IRFED T+          G++  EL           ++VDEAHER++STD+L GL+K I R RPDL+L+ISSAT+
Subjt:  IISQAVASRVAEEMGVKLGEEVGYTIRFEDLTN--------PCGLVFLEL---------KDIMVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATI

Query:  EAKSMSTFFQMSLCF
        +A+  S +F  +  F
Subjt:  EAKSMSTFFQMSLCF

Arabidopsis top hitse value%identityAlignment
AT1G32490.1 RNA helicase family protein1.2e-2047.83Show/hide
Query:  IISQAVASRVAEEMGVKLGEEVGYTIRFEDLTN--------PCGLVFLEL---------KDIMVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATI
        + + +VA+RVA+EMGVKLG EVGY+IRFED T+          G++  EL           ++VDEAHER++STD+L GL+K I R RPDL+L+ISSAT+
Subjt:  IISQAVASRVAEEMGVKLGEEVGYTIRFEDLTN--------PCGLVFLEL---------KDIMVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATI

Query:  EAKSMSTFFQMSLCF
        +A+  S +F  +  F
Subjt:  EAKSMSTFFQMSLCF

AT1G32490.2 RNA helicase family protein1.2e-2047.83Show/hide
Query:  IISQAVASRVAEEMGVKLGEEVGYTIRFEDLTN--------PCGLVFLEL---------KDIMVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATI
        + + +VA+RVA+EMGVKLG EVGY+IRFED T+          G++  EL           ++VDEAHER++STD+L GL+K I R RPDL+L+ISSAT+
Subjt:  IISQAVASRVAEEMGVKLGEEVGYTIRFEDLTN--------PCGLVFLEL---------KDIMVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATI

Query:  EAKSMSTFFQMSLCF
        +A+  S +F  +  F
Subjt:  EAKSMSTFFQMSLCF

AT3G26560.1 ATP-dependent RNA helicase, putative9.0e-2149.54Show/hide
Query:  IISQAVASRVAEEMGVKLGEEVGYTIRFEDLTNP--------CGLVFLEL---------KDIMVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATI
        + + +VA RVAEE G +LGEEVGY IRFED T P         G++  E+           IM+DEAHER+I TD+L GLLKK+ +RR DLRLI++SAT+
Subjt:  IISQAVASRVAEEMGVKLGEEVGYTIRFEDLTNP--------CGLVFLEL---------KDIMVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATI

Query:  EAKSMSTFF
        +A+  S +F
Subjt:  EAKSMSTFF

AT4G16680.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein5.2e-2144.27Show/hide
Query:  IISQAVASRVAEEMGVKLGEEVGYTIRFEDLTN--------PCGLVFLEL---------KDIMVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATI
        + + +VASRVA+E+GVKLG EVGY+IRFED T+          G++  EL           I++DEAHER++STD+L  L+K + + RPDLRLIISSAT+
Subjt:  IISQAVASRVAEEMGVKLGEEVGYTIRFEDLTN--------PCGLVFLEL---------KDIMVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATI

Query:  EAKSMSTFFQMSLCFLSKKRKKTLKSRSKTC
        EAK  S +F  +  +L   R+  ++   + C
Subjt:  EAKSMSTFFQMSLCFLSKKRKKTLKSRSKTC

AT4G18465.1 RNA helicase family protein2.6e-2864.55Show/hide
Query:  QAVASRVAEEMGVKLGEEVGYTIRFEDLTN---------PCGLVFLELKD---------IMVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATIEA
        QAV++RVAEEMGV LGEEVGYTIRFED T            G++  E+ +         IM+DEAHERSISTD+LLGLLKKIQRRRP+LRLIISSATIEA
Subjt:  QAVASRVAEEMGVKLGEEVGYTIRFEDLTN---------PCGLVFLELKD---------IMVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATIEA

Query:  KSMSTFFQMS
        K+MS FF  S
Subjt:  KSMSTFFQMS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAAAAGTTAATATTATTTCACAGGCAGTTGCTTCTAGAGTGGCTGAAGAGATGGGTGTTAAGCTTGGAGAAGAAGTTGGTTATACCATCAGATTTGAAGATCTTAC
AAATCCATGTGGTCTCGTTTTTTTAGAACTCAAGGACATAATGGTGGATGAAGCACATGAAAGGTCTATCTCAACTGACATGTTACTTGGTCTCTTGAAAAAGATTCAAC
GGCGACGACCCGATCTGCGATTGATTATCTCTTCTGCTACAATTGAGGCTAAATCAATGTCAACTTTCTTCCAAATGAGTCTCTGTTTCTTATCAAAAAAGAGAAAAAAA
ACCTTGAAATCGAGGAGTAAAACATGTAGACTATTTAAAGAAAAAAACCTTGGTGTGAAGGTTAAAGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAAAAGTTAATATTATTTCACAGGCAGTTGCTTCTAGAGTGGCTGAAGAGATGGGTGTTAAGCTTGGAGAAGAAGTTGGTTATACCATCAGATTTGAAGATCTTAC
AAATCCATGTGGTCTCGTTTTTTTAGAACTCAAGGACATAATGGTGGATGAAGCACATGAAAGGTCTATCTCAACTGACATGTTACTTGGTCTCTTGAAAAAGATTCAAC
GGCGACGACCCGATCTGCGATTGATTATCTCTTCTGCTACAATTGAGGCTAAATCAATGTCAACTTTCTTCCAAATGAGTCTCTGTTTCTTATCAAAAAAGAGAAAAAAA
ACCTTGAAATCGAGGAGTAAAACATGTAGACTATTTAAAGAAAAAAACCTTGGTGTGAAGGTTAAAGTTTGA
Protein sequenceShow/hide protein sequence
MKKVNIISQAVASRVAEEMGVKLGEEVGYTIRFEDLTNPCGLVFLELKDIMVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATIEAKSMSTFFQMSLCFLSKKRKK
TLKSRSKTCRLFKEKNLGVKVKV