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IVF0022550 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0022550
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr03:1639552..1639905
RNA-Seq ExpressionIVF0022550
SyntenyIVF0022550
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045526.1 hypothetical protein E6C27_scaffold243G00120 [Cucumis melo var. makuwa]2.05e-0833.73Show/hide
Query:  MTYAKEKWISEKNVQLHDTFKGKAATNYDEYNPEAEQYKFVENEALPPKICKSNKKNNIYDDLTSPFNTFKVKRSISFKEDKG
        +T+  +KW++E++V++H +F+ K A ++D++NP+AEQY F+ N A+PP+  K   K  + ++L+       + + I  K  KG
Subjt:  MTYAKEKWISEKNVQLHDTFKGKAATNYDEYNPEAEQYKFVENEALPPKICKSNKKNNIYDDLTSPFNTFKVKRSISFKEDKG

KAA0051643.1 hypothetical protein E6C27_scaffold60G00080 [Cucumis melo var. makuwa]1.10e-0736.54Show/hide
Query:  MTYAKEKWISEKNVQLHDTFKGKAATNYDEYNPEAEQYKFVENEALPPK----ICKSNK----------------KNNIYDDLTSPFNTFKVKRSISFKE
        +T+++ KW+ E+NVQLH TFK +AA ++DE+NP++EQ+ F   +A+ P     I  S+K                K +I     S FNT K KR +SF  
Subjt:  MTYAKEKWISEKNVQLHDTFKGKAATNYDEYNPEAEQYKFVENEALPPK----ICKSNK----------------KNNIYDDLTSPFNTFKVKRSISFKE

Query:  DKGK
           K
Subjt:  DKGK

KAA0056555.1 hypothetical protein E6C27_scaffold288G00600 [Cucumis melo var. makuwa]2.25e-81100Show/hide
Query:  MTYAKEKWISEKNVQLHDTFKGKAATNYDEYNPEAEQYKFVENEALPPKICKSNKKNNIYDDLTSPFNTFKVKRSISFKEDKGKHPAYARKDTGSGKGKA
        MTYAKEKWISEKNVQLHDTFKGKAATNYDEYNPEAEQYKFVENEALPPKICKSNKKNNIYDDLTSPFNTFKVKRSISFKEDKGKHPAYARKDTGSGKGKA
Subjt:  MTYAKEKWISEKNVQLHDTFKGKAATNYDEYNPEAEQYKFVENEALPPKICKSNKKNNIYDDLTSPFNTFKVKRSISFKEDKGKHPAYARKDTGSGKGKA

Query:  LMHHNDEKKVYEREYAP
        LMHHNDEKKVYEREYAP
Subjt:  LMHHNDEKKVYEREYAP

KGN61118.1 hypothetical protein Csa_021237 [Cucumis sativus]9.05e-0936.76Show/hide
Query:  MTYAKEKWISEKNVQLHDTFKGKAATNYDEYNPEAEQYKFVENEALPPKICKSNKKNNIYDDLTSPFN
        +++ + KW+ E+NV+ H  FK +A T++ E+NP A+Q+ F+ +E LPPK   S+K   + D++ +  N
Subjt:  MTYAKEKWISEKNVQLHDTFKGKAATNYDEYNPEAEQYKFVENEALPPKICKSNKKNNIYDDLTSPFN

TYJ97964.1 hypothetical protein E5676_scaffold234G00680 [Cucumis melo var. makuwa]1.09e-0736.54Show/hide
Query:  MTYAKEKWISEKNVQLHDTFKGKAATNYDEYNPEAEQYKFVENEALPPK----ICKSNK----------------KNNIYDDLTSPFNTFKVKRSISFKE
        +T+++ KW+ E+NVQLH TFK +AA ++DE+NP++EQ+ F   +A+ P     I  S+K                K +I     S FNT K KR +SF  
Subjt:  MTYAKEKWISEKNVQLHDTFKGKAATNYDEYNPEAEQYKFVENEALPPK----ICKSNK----------------KNNIYDDLTSPFNTFKVKRSISFKE

Query:  DKGK
           K
Subjt:  DKGK

TrEMBL top hitse value%identityAlignment
A0A0A0LH82 Uncharacterized protein1.2e-0536.76Show/hide
Query:  MTYAKEKWISEKNVQLHDTFKGKAATNYDEYNPEAEQYKFVENEALPPKICKSNKKNNIYDDLTSPFN
        +++ + KW+ E+NV+ H  FK +A T++ E+NP A+Q+ F+ +E LPPK   S+K   + D++ +  N
Subjt:  MTYAKEKWISEKNVQLHDTFKGKAATNYDEYNPEAEQYKFVENEALPPKICKSNKKNNIYDDLTSPFN

A0A5A7USS0 Uncharacterized protein4.6e-61100Show/hide
Query:  MTYAKEKWISEKNVQLHDTFKGKAATNYDEYNPEAEQYKFVENEALPPKICKSNKKNNIYDDLTSPFNTFKVKRSISFKEDKGKHPAYARKDTGSGKGKA
        MTYAKEKWISEKNVQLHDTFKGKAATNYDEYNPEAEQYKFVENEALPPKICKSNKKNNIYDDLTSPFNTFKVKRSISFKEDKGKHPAYARKDTGSGKGKA
Subjt:  MTYAKEKWISEKNVQLHDTFKGKAATNYDEYNPEAEQYKFVENEALPPKICKSNKKNNIYDDLTSPFNTFKVKRSISFKEDKGKHPAYARKDTGSGKGKA

Query:  LMHHNDEKKVYEREYAP
        LMHHNDEKKVYEREYAP
Subjt:  LMHHNDEKKVYEREYAP

A0A5A7V8Z8 Uncharacterized protein2.1e-0548Show/hide
Query:  MTYAKEKWISEKNVQLHDTFKGKAATNYDEYNPEAEQYKFVENEALPPKI
        +T+++ KW+ E+NV+LH TFK +AAT++DE+NP++EQ+ F   EA+ P +
Subjt:  MTYAKEKWISEKNVQLHDTFKGKAATNYDEYNPEAEQYKFVENEALPPKI

A0A5D3BFW3 Uncharacterized protein3.6e-0529.23Show/hide
Query:  MTYAKEKWISEKNVQLHDTFKGKAATNYDEYNPEAEQYKFVENEALPPKICKS--------------------NKKNNIYDDLTSPFNTFKVKRSISFKE
        +T+++ KW+ E+NVQLH TFK +AA ++DE+NP++EQ+ F   +A+ P    +                     +K +I     S FNT K KR +SF  
Subjt:  MTYAKEKWISEKNVQLHDTFKGKAATNYDEYNPEAEQYKFVENEALPPKICKS--------------------NKKNNIYDDLTSPFNTFKVKRSISFKE

Query:  DKGKHPAYARKDTGSGKGKALMHHNDEKKV
           K   +  +   +    +L     ++KV
Subjt:  DKGKHPAYARKDTGSGKGKALMHHNDEKKV

A0A5D3BSG0 Uncharacterized protein1.6e-0529.73Show/hide
Query:  MTYAKEKWISEKNVQLHDTFKGKAATNYDEYNPEAEQYKFVENEALPPKICKSNKKNNIYDDLTSPFNTFKVKRSISFKEDKGKHPAYA----RKDTGSG
        +T+  +KW++E++V++H +F+ K A ++D++NP+AEQY F+ N A+PP+  K  K   + ++L+       + + I  K  KG   +      +K+   G
Subjt:  MTYAKEKWISEKNVQLHDTFKGKAATNYDEYNPEAEQYKFVENEALPPKICKSNKKNNIYDDLTSPFNTFKVKRSISFKEDKGKHPAYA----RKDTGSG

Query:  KGKALMHHNDE
        K   L+   +E
Subjt:  KGKALMHHNDE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGTATGCTAAAGAAAAATGGATCTCAGAGAAGAATGTTCAATTGCATGATACTTTTAAAGGAAAAGCAGCAACGAACTACGATGAATATAACCCTGAAGCG
GAACAATACAAGTTCGTCGAAAATGAGGCTCTCCCACCGAAAATTTGCAAATCAAATAAGAAAAATAATATTTATGATGATTTGACCTCTCCATTTAATACATTT
AAAGTAAAGAGATCCATATCTTTTAAAGAAGACAAAGGCAAACATCCGGCTTATGCAAGAAAAGATACCGGATCGGGCAAAGGCAAAGCATTAATGCACCACAAT
GATGAGAAGAAGGTTTATGAGAGGGAATATGCACCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGACGTATGCTAAAGAAAAATGGATCTCAGAGAAGAATGTTCAATTGCATGATACTTTTAAAGGAAAAGCAGCAACGAACTACGATGAATATAACCCTGAAGCG
GAACAATACAAGTTCGTCGAAAATGAGGCTCTCCCACCGAAAATTTGCAAATCAAATAAGAAAAATAATATTTATGATGATTTGACCTCTCCATTTAATACATTT
AAAGTAAAGAGATCCATATCTTTTAAAGAAGACAAAGGCAAACATCCGGCTTATGCAAGAAAAGATACCGGATCGGGCAAAGGCAAAGCATTAATGCACCACAAT
GATGAGAAGAAGGTTTATGAGAGGGAATATGCACCGTAA
Protein sequenceShow/hide protein sequence
MTYAKEKWISEKNVQLHDTFKGKAATNYDEYNPEAEQYKFVENEALPPKICKSNKKNNIYDDLTSPFNTFKVKRSISFKEDKGKHPAYARKDTGSGKGKALMHHN
DEKKVYEREYAP