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IVF0022558 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0022558
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Genome locationchr08:24530401..24530817
RNA-Seq ExpressionIVF0022558
SyntenyIVF0022558
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016020 - membrane (cellular component)
GO:0016787 - hydrolase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026022.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]4.91e-2671.43Show/hide
Query:  MLADTFSQGIGCEASSLARELRCDPKRSKRWQMLPTSGEPSSGVRNHWKYICSEGDRLSLRTFGDCPRKTRARMSRT
        ML D FS GIG EA+SL  EL CDPKRSKRW MLPTSGE SSG RNHWK  CSEG+ LS RT G  P+KTRA M RT
Subjt:  MLADTFSQGIGCEASSLARELRCDPKRSKRWQMLPTSGEPSSGVRNHWKYICSEGDRLSLRTFGDCPRKTRARMSRT

KAA0061317.1 hypothetical protein E6C27_scaffold6213G00130 [Cucumis melo var. makuwa]4.19e-4066.39Show/hide
Query:  MPRTQFSRPGIKSGHATVSSLCFVLAISLSIFRARTLRTSTHTSDMLADTFSQGIGCEASSLARELRCDPKRSKRWQMLPTSGEPSSGVRNHWKYICSEG
        MPRTQFSR   K           VL ISLSIF ARTLRTSTHTS ML   F+QGIG EASSL  EL  DPKR KRW ML TSGE  SGVRNHWK  CS  
Subjt:  MPRTQFSRPGIKSGHATVSSLCFVLAISLSIFRARTLRTSTHTSDMLADTFSQGIGCEASSLARELRCDPKRSKRWQMLPTSGEPSSGVRNHWKYICSEG

Query:  DRLSLRTFGDCPRKTRARMSRT
        +RLS RT G CP KTR RMSRT
Subjt:  DRLSLRTFGDCPRKTRARMSRT

KAA0062888.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]5.63e-4868.84Show/hide
Query:  MSSSTSGACPNKTRARMPRTQFSRPGIKSGHATVSSLCFVLAISLSIFRARTLRTSTHTSDMLADTFSQGIGCEASSLARELRCDPKRSKRWQMLPTSGE
        ++S TSGA P KTRARMPR+QFSR G KS   TVSSLCFVL I+LSIF ART RTSTHT+ ML D FS+GIG EASSL  EL C+PKRSKRW MLPTS E
Subjt:  MSSSTSGACPNKTRARMPRTQFSRPGIKSGHATVSSLCFVLAISLSIFRARTLRTSTHTSDMLADTFSQGIGCEASSLARELRCDPKRSKRWQMLPTSGE

Query:  PSSGVRNHWKYICSEGDRLSLRTFGDCPRKTRARMSRT
         SSG+RNH K    EG+ LS RT    P+KTRARM RT
Subjt:  PSSGVRNHWKYICSEGDRLSLRTFGDCPRKTRARMSRT

TYK22521.1 uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa]1.17e-3950.81Show/hide
Query:  MSSSTSGACPNKTRARMPRTQFSRPGIKSGHATVSSLCFVLAISLSIF----------------------------------------------------
        +SS TSGA P KTRARMP+TQFSRPG KS   TVS+LC VL  SLSIF                                                    
Subjt:  MSSSTSGACPNKTRARMPRTQFSRPGIKSGHATVSSLCFVLAISLSIF----------------------------------------------------

Query:  --RARTLRTSTHTSDMLADTFSQGIGCEASSLARELRCDPKRSKRWQMLPTSGEPSSGVRNHWKYICSEGDRLSLRTFGDCPRKT
          R  T RTSTHTS ML DTFS GIG EASSL  EL CDPK SKRW MLPT GE SSG RNHWK  CSEG+ LS RT G  P KT
Subjt:  --RARTLRTSTHTSDMLADTFSQGIGCEASSLARELRCDPKRSKRWQMLPTSGEPSSGVRNHWKYICSEGDRLSLRTFGDCPRKT

TYK23424.1 gag/pol protein [Cucumis melo var. makuwa]3.34e-3657.97Show/hide
Query:  MSSSTSGACPNKTRARMPRTQFSRPGIKSGHATVSSLCFVLAISLSIFRARTLRTSTHTSDMLADTFSQGIGCEASSLARELRCDPKRSKRWQMLPTSGE
        +SS T G  P KT AR P+ QFS  G+KSGH TVSSL   + I L +F A     STHT DML+ T S GIG EASSL  EL CDPKRSK W ML TSG 
Subjt:  MSSSTSGACPNKTRARMPRTQFSRPGIKSGHATVSSLCFVLAISLSIFRARTLRTSTHTSDMLADTFSQGIGCEASSLARELRCDPKRSKRWQMLPTSGE

Query:  PSSGVRNHWKYICSEGDRLSLRTFGDCPRKTRARMSRT
         SS VRNHWK  C+E ++L  RT G  PRKT+AR+  T
Subjt:  PSSGVRNHWKYICSEGDRLSLRTFGDCPRKTRARMSRT

TrEMBL top hitse value%identityAlignment
A0A5A7V368 Uncharacterized protein1.3e-3066.39Show/hide
Query:  MPRTQFSRPGIKSGHATVSSLCFVLAISLSIFRARTLRTSTHTSDMLADTFSQGIGCEASSLARELRCDPKRSKRWQMLPTSGEPSSGVRNHWKYICSEG
        MPRTQFSR   K           VL ISLSIF ARTLRTSTHTS ML   F+QGIG EASSL  EL  DPKR KRW ML TSGE  SGVRNHWK  CS  
Subjt:  MPRTQFSRPGIKSGHATVSSLCFVLAISLSIFRARTLRTSTHTSDMLADTFSQGIGCEASSLARELRCDPKRSKRWQMLPTSGEPSSGVRNHWKYICSEG

Query:  DRLSLRTFGDCPRKTRARMSRT
        +RLS RT G CP KTR RMSRT
Subjt:  DRLSLRTFGDCPRKTRARMSRT

A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein6.9e-4068.84Show/hide
Query:  MSSSTSGACPNKTRARMPRTQFSRPGIKSGHATVSSLCFVLAISLSIFRARTLRTSTHTSDMLADTFSQGIGCEASSLARELRCDPKRSKRWQMLPTSGE
        ++S TSGA P KTRARMPR+QFSR G KS   TVSSLCFVL I+LSIF ART RTSTHT+ ML D FS+GIG EASSL  EL C+PKRSKRW MLPTS E
Subjt:  MSSSTSGACPNKTRARMPRTQFSRPGIKSGHATVSSLCFVLAISLSIFRARTLRTSTHTSDMLADTFSQGIGCEASSLARELRCDPKRSKRWQMLPTSGE

Query:  PSSGVRNHWKYICSEGDRLSLRTFGDCPRKTRARMSRT
         SSG+RNH K    EG+ LS RT    P+KTRARM RT
Subjt:  PSSGVRNHWKYICSEGDRLSLRTFGDCPRKTRARMSRT

A0A5D3DFP2 Uncharacterized protein3.1e-3250.81Show/hide
Query:  MSSSTSGACPNKTRARMPRTQFSRPGIKSGHATVSSLCFVLAISLSIF----------------------------------------------------
        +SS TSGA P KTRARMP+TQFSRPG KS   TVS+LC VL  SLSIF                                                    
Subjt:  MSSSTSGACPNKTRARMPRTQFSRPGIKSGHATVSSLCFVLAISLSIF----------------------------------------------------

Query:  --RARTLRTSTHTSDMLADTFSQGIGCEASSLARELRCDPKRSKRWQMLPTSGEPSSGVRNHWKYICSEGDRLSLRTFGDCPRKT
          R  T RTSTHTS ML DTFS GIG EASSL  EL CDPK SKRW MLPT GE SSG RNHWK  CSEG+ LS RT G  P KT
Subjt:  --RARTLRTSTHTSDMLADTFSQGIGCEASSLARELRCDPKRSKRWQMLPTSGEPSSGVRNHWKYICSEGDRLSLRTFGDCPRKT

A0A5D3DIF8 Gag/pol protein1.1e-2957.97Show/hide
Query:  MSSSTSGACPNKTRARMPRTQFSRPGIKSGHATVSSLCFVLAISLSIFRARTLRTSTHTSDMLADTFSQGIGCEASSLARELRCDPKRSKRWQMLPTSGE
        +SS T G  P KT AR P+ QFS  G+KSGH TVSSL  +  I L +F A     STHT DML+ T S GIG EASSL  EL CDPKRSK W ML TSG 
Subjt:  MSSSTSGACPNKTRARMPRTQFSRPGIKSGHATVSSLCFVLAISLSIFRARTLRTSTHTSDMLADTFSQGIGCEASSLARELRCDPKRSKRWQMLPTSGE

Query:  PSSGVRNHWKYICSEGDRLSLRTFGDCPRKTRARMSRT
         SS VRNHWK  C+E ++L  RT G  PRKT+AR+  T
Subjt:  PSSGVRNHWKYICSEGDRLSLRTFGDCPRKTRARMSRT

A0A5D3E5W4 NBS-LRR type resistance protein2.1e-2065.52Show/hide
Query:  TLRTSTHTSDMLADTFSQGIGCEASSLARELRCDPKRSKRWQMLPTSGEPSSGVRNHWKYICSEGDRLSLRTFGDCPRKTRARMSRT
        TL+TST T  ML DTFSQGIG +ASSL  E RCDPK+SK W MLPT  + SSGV+NHWK  C E +RLS RT    P+KTRARM RT
Subjt:  TLRTSTHTSDMLADTFSQGIGCEASSLARELRCDPKRSKRWQMLPTSGEPSSGVRNHWKYICSEGDRLSLRTFGDCPRKTRARMSRT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCTCGAGCACCTCTGGTGCTTGTCCCAACAAAACTAGAGCGAGAATGCCTCGAACTCAGTTTTCTCGTCCTGGAATAAAAAGCGGTCATGCGACGGTTTCTTCCCT
TTGCTTCGTATTGGCCATAAGTCTTTCAATCTTTCGAGCTCGTACTCTAAGGACCTCAACCCACACTTCTGACATGCTCGCTGACACGTTTTCCCAAGGTATAGGCTGTG
AAGCGAGCTCGTTGGCGAGAGAACTGAGGTGCGACCCAAAGCGATCCAAAAGATGGCAAATGCTTCCAACGAGTGGCGAACCCTCGTCTGGTGTAAGAAACCATTGGAAA
TACATTTGCAGCGAAGGAGACAGGCTGAGCTTGAGGACTTTTGGTGATTGTCCTAGGAAAACACGGGCGAGAATGTCTCGGACTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGCTCGAGCACCTCTGGTGCTTGTCCCAACAAAACTAGAGCGAGAATGCCTCGAACTCAGTTTTCTCGTCCTGGAATAAAAAGCGGTCATGCGACGGTTTCTTCCCT
TTGCTTCGTATTGGCCATAAGTCTTTCAATCTTTCGAGCTCGTACTCTAAGGACCTCAACCCACACTTCTGACATGCTCGCTGACACGTTTTCCCAAGGTATAGGCTGTG
AAGCGAGCTCGTTGGCGAGAGAACTGAGGTGCGACCCAAAGCGATCCAAAAGATGGCAAATGCTTCCAACGAGTGGCGAACCCTCGTCTGGTGTAAGAAACCATTGGAAA
TACATTTGCAGCGAAGGAGACAGGCTGAGCTTGAGGACTTTTGGTGATTGTCCTAGGAAAACACGGGCGAGAATGTCTCGGACTTAG
Protein sequenceShow/hide protein sequence
MSSSTSGACPNKTRARMPRTQFSRPGIKSGHATVSSLCFVLAISLSIFRARTLRTSTHTSDMLADTFSQGIGCEASSLARELRCDPKRSKRWQMLPTSGEPSSGVRNHWK
YICSEGDRLSLRTFGDCPRKTRARMSRT