; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0022798 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0022798
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon gag protein
Genome locationchr01:6269561..6269896
RNA-Seq ExpressionIVF0022798
SyntenyIVF0022798
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033278.1 hypothetical protein E6C27_scaffold845G00800 [Cucumis melo var. makuwa]3.02e-1441.18Show/hide
Query:  MCYCREDLHL---LPYVAAKRIINFIFN------------------VAAAEMIIFVFVFKMDTTKRII---FIFV---GRHLHLQCSATEAIIIFIFNAA
        MC  ++D HL   L  VAAK+I  FIF+                  +   E II +F+F     +R     F+     G  LHL C A E +I+FIF+AA
Subjt:  MCYCREDLHL---LPYVAAKRIINFIFN------------------VAAAEMIIFVFVFKMDTTKRII---FIFV---GRHLHLQCSATEAIIIFIFNAA

Query:  QLRWPSSSSSMRHSRDDYHLHLPCGAVQTIIISIFN
        Q R  SSSS MR SRD + LHLPCGA +T+I+ IF+
Subjt:  QLRWPSSSSSMRHSRDDYHLHLPCGAVQTIIISIFN

KAA0047505.1 hypothetical protein E6C27_scaffold498G001320 [Cucumis melo var. makuwa]2.18e-1163.79Show/hide
Query:  HLHLQCSATEAIIIFIFNAAQLRWPSSSSSMRHSRDDYHLHLPCGAVQTIIISIFNVV
        HL LQ   TE II+FIFN AQ +  SSSSSM  SR+D HLHL CGA +TIII I NV+
Subjt:  HLHLQCSATEAIIIFIFNAAQLRWPSSSSSMRHSRDDYHLHLPCGAVQTIIISIFNVV

KAA0061611.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.68e-1147Show/hide
Query:  MCYCRED--LHLLPYVAAKRIINFIFNVAAAEMIIFVFVFKMDTTKRIIFIFVGRHLHLQCSATEA--IIIFIFNAAQLRWPSSSSSMRHSRDDYHLHLP
        MCY RED  LHLL YVA + II FIF+          F     T + +       HLH QCS  EA  ++IFIFN A+ +  SSSS MR+SR+D+HLH P
Subjt:  MCYCRED--LHLLPYVAAKRIINFIFNVAAAEMIIFVFVFKMDTTKRIIFIFVGRHLHLQCSATEA--IIIFIFNAAQLRWPSSSSSMRHSRDDYHLHLP

TYK21322.1 glial fibrillary acidic protein-like [Cucumis melo var. makuwa]5.11e-1164.91Show/hide
Query:  RHLHLQCSATEAIIIFIFNAAQLRWPSSSSSMRHSRDDYHLHLPCGAVQTIIISIFN
         HLHL+C A EAIII IF  AQ R  SS SSM  SR  +HLHL CGAV+ IIISIF+
Subjt:  RHLHLQCSATEAIIIFIFNAAQLRWPSSSSSMRHSRDDYHLHLPCGAVQTIIISIFN

TYK26477.1 hypothetical protein E5676_scaffold313G00420 [Cucumis melo var. makuwa]3.54e-1140.83Show/hide
Query:  MCYCREDLHL---LPYVAAKRIINFIFNVAAAEMIIFVFVFKM------DTTKRIIFIFVGRHLHLQCSATEAIIIFIFNAAQLRWPSSSSSMRHSRDDY
        +C  +ED H    L  VAAK+II F+FNV A E IIF+FVF M       ++  +      RHLHLQC A E III I N                  D+
Subjt:  MCYCREDLHL---LPYVAAKRIINFIFNVAAAEMIIFVFVFKM------DTTKRIIFIFVGRHLHLQCSATEAIIIFIFNAAQLRWPSSSSSMRHSRDDY

Query:  HLHLPCGAVQTIIISIFNVV
        HLHL C A + ++I  FN V
Subjt:  HLHLPCGAVQTIIISIFNVV

TrEMBL top hitse value%identityAlignment
A0A5A7SRV7 Uncharacterized protein2.9e-1236.26Show/hide
Query:  YCREDLHLLPYVAAKRIINFIFN-----------------------------VAAAEMIIFVF--VFKMDTT---------------KRIIFIF------
        + REDLH LP VA +RI  FIF+                             VAA ++ IF+F  VF++  +               + IIFIF      
Subjt:  YCREDLHLLPYVAAKRIINFIFN-----------------------------VAAAEMIIFVF--VFKMDTT---------------KRIIFIF------

Query:  ------------VGRHLHLQCSATEAIIIFIFNAAQLRWPSSSSSMRHSRDDYHLHLPCGAVQTIIISIFN
                     G  LHL C A E +I+FIF+AAQ R  SSSS MR SRD + LHLPCGA +T+I+ IF+
Subjt:  ------------VGRHLHLQCSATEAIIIFIFNAAQLRWPSSSSSMRHSRDDYHLHLPCGAVQTIIISIFN

A0A5A7U1J1 Uncharacterized protein1.7e-0963.79Show/hide
Query:  HLHLQCSATEAIIIFIFNAAQLRWPSSSSSMRHSRDDYHLHLPCGAVQTIIISIFNVV
        HL LQ   TE II+FIFN AQ +  SSSSSM  SR+D HLHL CGA +TIII I NV+
Subjt:  HLHLQCSATEAIIIFIFNAAQLRWPSSSSSMRHSRDDYHLHLPCGAVQTIIISIFNVV

A0A5A7V7A0 Retrotransposon gag protein1.1e-0847Show/hide
Query:  MCYCRED--LHLLPYVAAKRIINFIFNVAAAEMIIFVFVFKMDTTKRIIFIFVGRHLHLQCSATEA--IIIFIFNAAQLRWPSSSSSMRHSRDDYHLHLP
        MCY RED  LHLL YVA + II FIF+          F     T + +       HLH QCS  EA  ++IFIFN A+ +  SSSS MR+SR+D+HLH P
Subjt:  MCYCRED--LHLLPYVAAKRIINFIFNVAAAEMIIFVFVFKMDTTKRIIFIFVGRHLHLQCSATEA--IIIFIFNAAQLRWPSSSSSMRHSRDDYHLHLP

A0A5D3DRX7 Uncharacterized protein3.9e-0940.83Show/hide
Query:  MCYCREDLH---LLPYVAAKRIINFIFNVAAAEMIIFVFVFKM------DTTKRIIFIFVGRHLHLQCSATEAIIIFIFNAAQLRWPSSSSSMRHSRDDY
        +C  +ED H    L  VAAK+II F+FNV A E IIF+FVF M       ++  +      RHLHLQC A E III I N                  D+
Subjt:  MCYCREDLH---LLPYVAAKRIINFIFNVAAAEMIIFVFVFKM------DTTKRIIFIFVGRHLHLQCSATEAIIIFIFNAAQLRWPSSSSSMRHSRDDY

Query:  HLHLPCGAVQTIIISIFNVV
        HLHL C A + ++I  FN V
Subjt:  HLHLPCGAVQTIIISIFNVV

A0A5D3DYN4 Retrotransposon gag protein8.7e-0946.94Show/hide
Query:  MCYCRED--LHLLPYVAAKRIINFIFNVAAAEMIIFVFVFKMDTTKRIIFIFVGRHLHLQCSATEAIIIFIFNAAQLRWPSSSSSMRHSRDDYHLHLP
        MCY RED  LHLL  V  + II FIF+            F    T   + +    HLH QCSA EA +IFIFN A+ R  SSSS M++SR+D+HLH P
Subjt:  MCYCRED--LHLLPYVAAKRIINFIFNVAAAEMIIFVFVFKMDTTKRIIFIFVGRHLHLQCSATEAIIIFIFNAAQLRWPSSSSSMRHSRDDYHLHLP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTTACTGTCGAGAGGATCTTCATCTTCTGCCATATGTTGCAGCCAAGAGGATCATTAACTTCATCTTCAATGTTGCTGCAGCCGAGATGATTATCTTCGTCTTCGT
CTTTAAGATGGACACAACAAAGAGGATCATCTTCATCTTCGTGGGTCGTCATCTTCATCTTCAATGCAGCGCAACAGAGGCGATCATCATCTTCATCTTCAATGCAGCGC
AGCTGAGATGGCCATCATCTTCATCTTCAATGCGGCACAGTCGAGACGATTATCATCTTCATCTTCCATGCGGCGCAGTTCAGACGATCATCATCTCCATCTTCAATGTA
GTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGTTACTGTCGAGAGGATCTTCATCTTCTGCCATATGTTGCAGCCAAGAGGATCATTAACTTCATCTTCAATGTTGCTGCAGCCGAGATGATTATCTTCGTCTTCGT
CTTTAAGATGGACACAACAAAGAGGATCATCTTCATCTTCGTGGGTCGTCATCTTCATCTTCAATGCAGCGCAACAGAGGCGATCATCATCTTCATCTTCAATGCAGCGC
AGCTGAGATGGCCATCATCTTCATCTTCAATGCGGCACAGTCGAGACGATTATCATCTTCATCTTCCATGCGGCGCAGTTCAGACGATCATCATCTCCATCTTCAATGTA
GTGTAG
Protein sequenceShow/hide protein sequence
MCYCREDLHLLPYVAAKRIINFIFNVAAAEMIIFVFVFKMDTTKRIIFIFVGRHLHLQCSATEAIIIFIFNAAQLRWPSSSSSMRHSRDDYHLHLPCGAVQTIIISIFNV
V