CuGenDBv2

Gene ID	IVF0022822
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	DNA-directed RNA polymerase subunit beta''
Genome location	chr07:3987684..3988133
RNA-Seq Expression	IVF0022822
Synteny	IVF0022822
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0006412 - translation (biological process) GO:0015986 - ATP synthesis coupled proton transport (biological process) GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) (cellular component) GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) (cellular component) GO:0005743 - mitochondrial inner membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0009507 - chloroplast (cellular component) GO:0015935 - small ribosomal subunit (cellular component) GO:0008270 - zinc ion binding (molecular function) GO:0032549 - ribonucleoside binding (molecular function) GO:0005524 - ATP binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0003677 - DNA binding (molecular function)
InterPro domains	IPR042102 - RNA polymerase Rpb1, domain 3 superfamily IPR007066 - RNA polymerase Rpb1, domain 3

Homology

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GenBank top hits

e value

%identity

Alignment

prf||1211235P rpoC-like ORF 236 [Nicotiana tabacum]

8.01e-79

86.9

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Query:  LSGSTRTIGPEFLRESRSRKGSFLIINSNLLSNPTQRNMEVLMAEGVDLVFHNKLIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLG
        LSGS R+I PEF+RESRS KGSF I +SN LSN TQRNMEVLMAE  +LVFHNK I+GTA+K LISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLG
Subjt:  LSGSTRTIGPEFLRESRSRKGSFLIINSNLLSNPTQRNMEVLMAEGVDLVFHNKLIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLG

Query:  IYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI
        I DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI
Subjt:  IYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI

QJS52311.1 RNA polymerase beta'' subunit [Indofevillea khasiana]

2.44e-82

93.96

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Query:  MNFVLSGSTRTIGPEFLRESRSRKGSFLIINSNLLSNPTQRNMEVLMAEGVDLVFHNKLIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATS
        MNFVLSGSTRTIGPEFLRESRSRKGSF +I+SNLLSNPTQRNMEVLMAE  DLVFHNK+IDGTAIK LISRLIDHFGMAYTSHILDQ+KTLGFQQATATS
Subjt:  MNFVLSGSTRTIGPEFLRESRSRKGSFLIINSNLLSNPTQRNMEVLMAEGVDLVFHNKLIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATS

Query:  ISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI
        ISLGI DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI
Subjt:  ISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI

QWQ50133.1 RNA polymerase beta'' subunit [Cyclanthera pedata]

6.19e-82

93.29

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Query:  MNFVLSGSTRTIGPEFLRESRSRKGSFLIINSNLLSNPTQRNMEVLMAEGVDLVFHNKLIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATS
        MNFVLSGSTRT+GPEFLRESRSRKGSF II+SNLLSNPTQRNMEVLMAE  DLVFHNK+IDGTAIK LISRLIDHFGMAYTSHILDQ+KTLGFQQATATS
Subjt:  MNFVLSGSTRTIGPEFLRESRSRKGSFLIINSNLLSNPTQRNMEVLMAEGVDLVFHNKLIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATS

Query:  ISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI
        ISLGI DLLTIPSKGWLVQDAEQQS ILEKHHHYGNVHAVEKLRQSIEI
Subjt:  ISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI

YP_009525176.1 RNA polymerase beta subunit [Hodgsonia macrocarpa]

1.30e-82

94.63

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Query:  MNFVLSGSTRTIGPEFLRESRSRKGSFLIINSNLLSNPTQRNMEVLMAEGVDLVFHNKLIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATS
        MNFVLSGSTRTIGPEFLRESRSRKGSF II+SNLLSNPTQRNMEVLMAE  DLVFHNK+IDGTAIK LISRLIDHFGMAYTSHILDQ+KTLGFQQATATS
Subjt:  MNFVLSGSTRTIGPEFLRESRSRKGSFLIINSNLLSNPTQRNMEVLMAEGVDLVFHNKLIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATS

Query:  ISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI
        ISLGI DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI
Subjt:  ISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI

YP_010131084.1 RNA polymerase beta'' subunit [Benincasa hispida]

5.09e-83

95.3

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Query:  MNFVLSGSTRTIGPEFLRESRSRKGSFLIINSNLLSNPTQRNMEVLMAEGVDLVFHNKLIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATS
        M FVLSGSTRTIGPEFLRESRSRKGSFLII+SNLLSNPTQRNMEVLMAE  DLVFHNK+IDGTAIK LISRLIDHFGMAYTSHILDQLKTLGFQQATATS
Subjt:  MNFVLSGSTRTIGPEFLRESRSRKGSFLIINSNLLSNPTQRNMEVLMAEGVDLVFHNKLIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATS

Query:  ISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI
        ISLGI DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI
Subjt:  ISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI

TrEMBL top hits

e value

%identity

Alignment

A0A346QNZ0 DNA-directed RNA polymerase subunit beta''

6.3e-71

94.63

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Query:  MNFVLSGSTRTIGPEFLRESRSRKGSFLIINSNLLSNPTQRNMEVLMAEGVDLVFHNKLIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATS
        MNFVLSGSTRTIGPEFLRESRSRKGSF II+SNLLSNPTQRNMEVLMAE  DLVFHNK+IDGTAIK LISRLIDHFGMAYTSHILDQ+KTLGFQQATATS
Subjt:  MNFVLSGSTRTIGPEFLRESRSRKGSFLIINSNLLSNPTQRNMEVLMAEGVDLVFHNKLIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATS

Query:  ISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI
        ISLGI DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI
Subjt:  ISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI

A0A4D6NNC8 Multifunctional fusion protein

6.9e-62

87.59

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Query:  LSGSTRTIGPEFLRESRSRKGSFLIINSNLLSNPTQRNMEVLMAEGVDLVFHNKLIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLG
        + GS RTI PEFL ESRSRKGSF II+SN LSNPTQRN EVLMAE  +LVFHNK+IDGTAIK LISRLIDHFGMAYTSHILDQ+KTLGF+QATATSISLG
Subjt:  LSGSTRTIGPEFLRESRSRKGSFLIINSNLLSNPTQRNMEVLMAEGVDLVFHNKLIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLG

Query:  IYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI
        I DLLTIPSKGWLVQDAEQQS ILEKHHHYGNVHAVEKLRQSIEI
Subjt:  IYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI

A0A6M4SPN7 DNA-directed RNA polymerase subunit beta''

1.1e-70

93.96

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Query:  MNFVLSGSTRTIGPEFLRESRSRKGSFLIINSNLLSNPTQRNMEVLMAEGVDLVFHNKLIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATS
        MNFVLSGSTRTIGPEFLRESRSRKGSF +I+SNLLSNPTQRNMEVLMAE  DLVFHNK+IDGTAIK LISRLIDHFGMAYTSHILDQ+KTLGFQQATATS
Subjt:  MNFVLSGSTRTIGPEFLRESRSRKGSFLIINSNLLSNPTQRNMEVLMAEGVDLVFHNKLIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATS

Query:  ISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI
        ISLGI DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI
Subjt:  ISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI

A0A7J7M9Q4 DNA-directed RNA polymerase subunit

5.3e-62

87.07

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Query:  FVLSGSTRTIGPEFLRESRSRKGSFLIINSNLLSNPTQRNMEVLMAEGVDLVFHNKLIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS
        FVL  ST  I PEFL ESRSRKGS  I +SNLLSNPT RNMEVLMAE  DLVFHNK IDGTA+K LISRLIDHFGMAYTSHILDQ+KTLGFQQATATSIS
Subjt:  FVLSGSTRTIGPEFLRESRSRKGSFLIINSNLLSNPTQRNMEVLMAEGVDLVFHNKLIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS

Query:  LGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI
        LGI DLLTIPSKGWLVQDAEQQS ILEKHHHYGNVHAVEKLRQSIEI
Subjt:  LGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI

A0A7T3QNJ7 RNA polymerase beta'' subunit

2.8e-71

95.3

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Query:  MNFVLSGSTRTIGPEFLRESRSRKGSFLIINSNLLSNPTQRNMEVLMAEGVDLVFHNKLIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATS
        M FVLSGSTRTIGPEFLRESRSRKGSFLII+SNLLSNPTQRNMEVLMAE  DLVFHNK+IDGTAIK LISRLIDHFGMAYTSHILDQLKTLGFQQATATS
Subjt:  MNFVLSGSTRTIGPEFLRESRSRKGSFLIINSNLLSNPTQRNMEVLMAEGVDLVFHNKLIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATS

Query:  ISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI
        ISLGI DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI
Subjt:  ISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI

SwissProt top hits

e value

%identity

Alignment

Q06H07 DNA-directed RNA polymerase subunit beta''

7.7e-50

92.52

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Query:  MEVLMAEGVDLVFHNKLIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEK
        MEVLMAE  DLVFHNK+IDGTA+K LISRLIDHFGMAYTSHILDQ+KT+GFQQATATSISLGI DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEK
Subjt:  MEVLMAEGVDLVFHNKLIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEK

Query:  LRQSIEI
        LRQSIEI
Subjt:  LRQSIEI

Q09G56 DNA-directed RNA polymerase subunit beta''

7.7e-50

93.46

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Query:  MEVLMAEGVDLVFHNKLIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEK
        MEVLMAE  DLVFHNK IDGTA+K LISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGI DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEK
Subjt:  MEVLMAEGVDLVFHNKLIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEK

Query:  LRQSIEI
        LRQSIEI
Subjt:  LRQSIEI

Q49L08 DNA-directed RNA polymerase subunit beta''

3.4e-50

93.46

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Query:  MEVLMAEGVDLVFHNKLIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEK
        MEVLMAE V+LVFHNK+IDGTAIK LISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGI DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEK
Subjt:  MEVLMAEGVDLVFHNKLIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEK

Query:  LRQSIEI
        LRQSIE+
Subjt:  LRQSIEI

Q4VZP3 DNA-directed RNA polymerase subunit beta''

9.1e-51

95.33

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Query:  MEVLMAEGVDLVFHNKLIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEK
        MEVLMAE  DLVFHNK+IDGTAIK LISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGI DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEK
Subjt:  MEVLMAEGVDLVFHNKLIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEK

Query:  LRQSIEI
        LRQSIEI
Subjt:  LRQSIEI

Q9THV5 DNA-directed RNA polymerase subunit beta''

7.7e-50

93.46

Show/hide

Query:  MEVLMAEGVDLVFHNKLIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEK
        MEVLMAE  +LVFHNK+IDGTAIK LISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGI DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEK
Subjt:  MEVLMAEGVDLVFHNKLIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEK

Query:  LRQSIEI
        LRQSIEI
Subjt:  LRQSIEI

Arabidopsis top hits

e value

%identity

Alignment

ATCG00170.1 DNA-directed RNA polymerase family protein

2.5e-48

92.23

Show/hide

Query:  MAEGVDLVFHNKLIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQS
        MAE  +LVFHNK+IDGTAIK LISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGI DLLTIPSKGWLVQDAEQQS ILEKHHHYGNVHAVEKLRQS
Subjt:  MAEGVDLVFHNKLIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQS

Query:  IEI
        IEI
Subjt:  IEI

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAATTTTGTTCTCTCCGGTTCAACTAGGACCATAGGTCCTGAATTTCTACGCGAATCAAGATCGAGAAAAGGAAGTTTTCTAATCATTAACTCAAACCTATTGTCAAA
CCCCACTCAGCGTAATATGGAGGTACTTATGGCGGAAGGAGTCGATCTGGTCTTTCACAATAAACTGATAGATGGAACTGCCATTAAAGGACTTATTAGCAGATTAATAG
ATCACTTCGGAATGGCATATACATCACACATCCTGGATCAACTAAAGACTCTGGGGTTCCAGCAGGCCACTGCTACATCCATTTCATTAGGAATTTATGATCTTTTAACA
ATCCCTTCTAAGGGATGGCTAGTCCAAGATGCTGAACAACAAAGTTTGATTTTGGAAAAACACCATCATTATGGAAACGTACACGCAGTAGAAAAATTACGCCAGTCCAT
TGAGATATGA

mRNA sequence

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Protein sequence

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MNFVLSGSTRTIGPEFLRESRSRKGSFLIINSNLLSNPTQRNMEVLMAEGVDLVFHNKLIDGTAIKGLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIYDLLT
IPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI

IVF0022822 (gene) of Melon (IVF77) v1 genome