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IVF0022836 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0022836
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon gag protein
Genome locationchr04:16465138..16465596
RNA-Seq ExpressionIVF0022836
SyntenyIVF0022836
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025375.1 zinc finger Y-chromosomal protein 1-like isoform X1 [Cucumis melo var. makuwa]4.58e-6778.29Show/hide
Query:  MLQPRRLSSQICCSQKDFYLKYIVAEKVVVSYILQPRMSSSQICCRREGRPFKYVAAEKIVVLKYVAAEKIITLNMLQPRRSSSQI-------------S
        MLQPRR S QICCSQKDF LKYIVAEKVVVSYILQPRMSSSQIC RR G P KYVAAEKIVVLKYVAAEKI+  NMLQPRRSS +I             +
Subjt:  MLQPRRLSSQICCSQKDFYLKYIVAEKVVVSYILQPRMSSSQICCRREGRPFKYVAAEKIVVLKYVAAEKIITLNMLQPRRSSSQI-------------S

Query:  EKVVVSYMLQPRMSSSLICRRREGRPLKYVAAKKIVVLKYVAAEKIIVSNML
        EKVVVSY+LQPRMSSS IC RR GRPLKYVAA+KIVVLKYV AEKI+VSNML
Subjt:  EKVVVSYMLQPRMSSSLICRRREGRPLKYVAAKKIVVLKYVAAEKIIVSNML

KAA0032450.1 hypothetical protein E6C27_scaffold999G00100 [Cucumis melo var. makuwa]1.00e-6678.95Show/hide
Query:  MLQPRRLSSQICCSQKDFYLKYIVAEKVVVSYILQPRMSSSQICCRREGRPFKYVAAEKIVVLKYVAAEKIITLNMLQPRRSSSQI-------------S
        MLQPRR SSQICCSQKDF  +YI+AEKVVVSYILQPRMSSSQIC RRE RP KYVAAEKI VLKYVAAEKII  NMLQPRRSSSQI              
Subjt:  MLQPRRLSSQICCSQKDFYLKYIVAEKVVVSYILQPRMSSSQICCRREGRPFKYVAAEKIVVLKYVAAEKIITLNMLQPRRSSSQI-------------S

Query:  EKVVVSYMLQPRMSSSLICRRREGRPLKYVAAKKIVVLKYVAAEKIIVSNML
        EKVVVSYMLQPRMS S IC  REGRPLKYVAAKKI+V KYVAA+KIIVSNML
Subjt:  EKVVVSYMLQPRMSSSLICRRREGRPLKYVAAKKIVVLKYVAAEKIIVSNML

KAA0051981.1 hypothetical protein E6C27_scaffold60G004640 [Cucumis melo var. makuwa]9.31e-6969.02Show/hide
Query:  MLQPRRLSSQICCSQKDFYLKYIVAEKVVVSYILQPRMSSSQICCRREGRPFKYVAAEKIVVLKYVAAEKIITLNMLQPRRSSSQI--------------
        MLQPRR SSQICCSQKDF LKYIVAEKVVVSYILQPRMSSSQICCRREGRP KYVA EKI+VLKYVAAEKII  NMLQPRRSSSQI              
Subjt:  MLQPRRLSSQICCSQKDFYLKYIVAEKVVVSYILQPRMSSSQICCRREGRPFKYVAAEKIVVLKYVAAEKIITLNMLQPRRSSSQI--------------

Query:  -------------------------------SEKVVVSYMLQPRMSSSLICRRREGRPLKYVAAKKIVVLKYVAAEKIIVSNML
                                       +EKVVVSYML PRMSSS IC RREGRPLKY+AAKKIVVLKYVAAEKIIVSNML
Subjt:  -------------------------------SEKVVVSYMLQPRMSSSLICRRREGRPLKYVAAKKIVVLKYVAAEKIIVSNML

KAA0064215.1 hypothetical protein E6C27_scaffold548G001630 [Cucumis melo var. makuwa]4.04e-6467.39Show/hide
Query:  MLQPRRLSSQICCSQKDFYLKYIVAEKVVVSYILQPRMSSSQICCRREGRPFKYVAAEKIVVLKYVAAEKIITLNMLQPRRSSSQI--------------
        MLQ RR SSQICCSQKDF LKYIVAEKV VSYILQPR+SSSQICCRREG P KYVA EKI VLKYVAAEKII  NMLQPRRSSSQI              
Subjt:  MLQPRRLSSQICCSQKDFYLKYIVAEKVVVSYILQPRMSSSQICCRREGRPFKYVAAEKIVVLKYVAAEKIITLNMLQPRRSSSQI--------------

Query:  -------------------------------SEKVVVSYMLQPRMSSSLICRRREGRPLKYVAAKKIVVLKYVAAEKIIVSNML
                                       +EKVV+SYMLQPRMSSS IC RREGRPLKYVAAKKIVVLKYVAAEKIIVSNML
Subjt:  -------------------------------SEKVVVSYMLQPRMSSSLICRRREGRPLKYVAAKKIVVLKYVAAEKIIVSNML

TYK04576.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.38e-6569.02Show/hide
Query:  MLQPRRLSSQICCSQKDFYLKYIVAEKVVVSYILQPRMSSSQICCRREGRPFKYVAAEKIVVLKYVAAEKIITLNMLQPRRSSSQI--------------
        MLQPRR SSQICCSQKDF LKYIVAEKVVVSYILQPRMSSSQICCRREGRP KYVA EKI+VLKYVAAEKII  NMLQPRRSSSQI              
Subjt:  MLQPRRLSSQICCSQKDFYLKYIVAEKVVVSYILQPRMSSSQICCRREGRPFKYVAAEKIVVLKYVAAEKIITLNMLQPRRSSSQI--------------

Query:  -------------------------------SEKVVVSYMLQPRMSSSLICRRREGRPLKYVAAKKIVVLKYVAAEKIIVSNML
                                       +EKVVVSYML PRMSSS IC RREGRPLKY+AAKKIVVLKYVAAEKIIVSNML
Subjt:  -------------------------------SEKVVVSYMLQPRMSSSLICRRREGRPLKYVAAKKIVVLKYVAAEKIIVSNML

TrEMBL top hitse value%identityAlignment
A0A5A7SLN4 Zinc finger Y-chromosomal protein 1-like isoform X15.1e-5178.29Show/hide
Query:  MLQPRRLSSQICCSQKDFYLKYIVAEKVVVSYILQPRMSSSQICCRREGRPFKYVAAEKIVVLKYVAAEKIITLNMLQPRRSSSQI-------------S
        MLQPRR S QICCSQKDF LKYIVAEKVVVSYILQPRMSSSQIC RR G P KYVAAEKIVVLKYVAAEKI+  NMLQPRRSS +I             +
Subjt:  MLQPRRLSSQICCSQKDFYLKYIVAEKVVVSYILQPRMSSSQICCRREGRPFKYVAAEKIVVLKYVAAEKIITLNMLQPRRSSSQI-------------S

Query:  EKVVVSYMLQPRMSSSLICRRREGRPLKYVAAKKIVVLKYVAAEKIIVSNML
        EKVVVSY+LQPRMSSS IC RR GRPLKYVAA+KIVVLKYV AEKI+VSNML
Subjt:  EKVVVSYMLQPRMSSSLICRRREGRPLKYVAAKKIVVLKYVAAEKIIVSNML

A0A5A7SNS6 Uncharacterized protein3.9e-5178.95Show/hide
Query:  MLQPRRLSSQICCSQKDFYLKYIVAEKVVVSYILQPRMSSSQICCRREGRPFKYVAAEKIVVLKYVAAEKIITLNMLQPRRSSSQI-------------S
        MLQPRR SSQICCSQKDF  +YI+AEKVVVSYILQPRMSSSQIC RRE RP KYVAAEKI VLKYVAAEKII  NMLQPRRSSSQI              
Subjt:  MLQPRRLSSQICCSQKDFYLKYIVAEKVVVSYILQPRMSSSQICCRREGRPFKYVAAEKIVVLKYVAAEKIITLNMLQPRRSSSQI-------------S

Query:  EKVVVSYMLQPRMSSSLICRRREGRPLKYVAAKKIVVLKYVAAEKIIVSNML
        EKVVVSYMLQPRMS S IC  REGRPLKYVAAKKI+V KYVAA+KIIVSNML
Subjt:  EKVVVSYMLQPRMSSSLICRRREGRPLKYVAAKKIVVLKYVAAEKIIVSNML

A0A5A7UEK9 Uncharacterized protein3.2e-5369.02Show/hide
Query:  MLQPRRLSSQICCSQKDFYLKYIVAEKVVVSYILQPRMSSSQICCRREGRPFKYVAAEKIVVLKYVAAEKIITLNMLQPRRSSSQI--------------
        MLQPRR SSQICCSQKDF LKYIVAEKVVVSYILQPRMSSSQICCRREGRP KYVA EKI+VLKYVAAEKII  NMLQPRRSSSQI              
Subjt:  MLQPRRLSSQICCSQKDFYLKYIVAEKVVVSYILQPRMSSSQICCRREGRPFKYVAAEKIVVLKYVAAEKIITLNMLQPRRSSSQI--------------

Query:  -------------------------------SEKVVVSYMLQPRMSSSLICRRREGRPLKYVAAKKIVVLKYVAAEKIIVSNML
                                       +EKVVVSYML PRMSSS IC RREGRPLKY+AAKKIVVLKYVAAEKIIVSNML
Subjt:  -------------------------------SEKVVVSYMLQPRMSSSLICRRREGRPLKYVAAKKIVVLKYVAAEKIIVSNML

A0A5A7VE92 Uncharacterized protein2.0e-5067.39Show/hide
Query:  MLQPRRLSSQICCSQKDFYLKYIVAEKVVVSYILQPRMSSSQICCRREGRPFKYVAAEKIVVLKYVAAEKIITLNMLQPRRSSSQI--------------
        MLQ RR SSQICCSQKDF LKYIVAEKV VSYILQPR+SSSQICCRREG P KYVA EKI VLKYVAAEKII  NMLQPRRSSSQI              
Subjt:  MLQPRRLSSQICCSQKDFYLKYIVAEKVVVSYILQPRMSSSQICCRREGRPFKYVAAEKIVVLKYVAAEKIITLNMLQPRRSSSQI--------------

Query:  -------------------------------SEKVVVSYMLQPRMSSSLICRRREGRPLKYVAAKKIVVLKYVAAEKIIVSNML
                                       +EKVV+SYMLQPRMSSS IC RREGRPLKYVAAKKIVVLKYVAAEKIIVSNML
Subjt:  -------------------------------SEKVVVSYMLQPRMSSSLICRRREGRPLKYVAAKKIVVLKYVAAEKIIVSNML

A0A5D3C2C8 Retrotransposon gag protein3.2e-5369.02Show/hide
Query:  MLQPRRLSSQICCSQKDFYLKYIVAEKVVVSYILQPRMSSSQICCRREGRPFKYVAAEKIVVLKYVAAEKIITLNMLQPRRSSSQI--------------
        MLQPRR SSQICCSQKDF LKYIVAEKVVVSYILQPRMSSSQICCRREGRP KYVA EKI+VLKYVAAEKII  NMLQPRRSSSQI              
Subjt:  MLQPRRLSSQICCSQKDFYLKYIVAEKVVVSYILQPRMSSSQICCRREGRPFKYVAAEKIVVLKYVAAEKIITLNMLQPRRSSSQI--------------

Query:  -------------------------------SEKVVVSYMLQPRMSSSLICRRREGRPLKYVAAKKIVVLKYVAAEKIIVSNML
                                       +EKVVVSYML PRMSSS IC RREGRPLKY+AAKKIVVLKYVAAEKIIVSNML
Subjt:  -------------------------------SEKVVVSYMLQPRMSSSLICRRREGRPLKYVAAKKIVVLKYVAAEKIIVSNML

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTACAACCGAGAAGATTGTCGTCTCAAATATGTTGCAGCCAAAAAGATTTTTATCTCAAGTATATTGTAGCCGAGAAAGTCGTCGTCTCATATATATTGCAGCCGAG
GATGTCGTCGTCTCAAATATGTTGTCGTCGAGAAGGTCGTCCCTTCAAATATGTTGCAGCTGAGAAGATTGTCGTTCTTAAATATGTTGCAGCAGAGAAGATCATCACCT
TAAATATGTTACAACCGAGAAGATCGTCGTCTCAAATATCCGAGAAAGTCGTCGTCTCATATATGTTGCAGCCGAGGATGTCGTCGTCTCTAATATGTCGTCGCCGAGAA
GGTCGTCCCCTCAAATATGTTGCAGCTAAGAAGATCGTTGTTCTTAAATATGTTGCAGCAGAGAAGATCATCGTCTCAAATATGTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTACAACCGAGAAGATTGTCGTCTCAAATATGTTGCAGCCAAAAAGATTTTTATCTCAAGTATATTGTAGCCGAGAAAGTCGTCGTCTCATATATATTGCAGCCGAG
GATGTCGTCGTCTCAAATATGTTGTCGTCGAGAAGGTCGTCCCTTCAAATATGTTGCAGCTGAGAAGATTGTCGTTCTTAAATATGTTGCAGCAGAGAAGATCATCACCT
TAAATATGTTACAACCGAGAAGATCGTCGTCTCAAATATCCGAGAAAGTCGTCGTCTCATATATGTTGCAGCCGAGGATGTCGTCGTCTCTAATATGTCGTCGCCGAGAA
GGTCGTCCCCTCAAATATGTTGCAGCTAAGAAGATCGTTGTTCTTAAATATGTTGCAGCAGAGAAGATCATCGTCTCAAATATGTTGTAG
Protein sequenceShow/hide protein sequence
MLQPRRLSSQICCSQKDFYLKYIVAEKVVVSYILQPRMSSSQICCRREGRPFKYVAAEKIVVLKYVAAEKIITLNMLQPRRSSSQISEKVVVSYMLQPRMSSSLICRRRE
GRPLKYVAAKKIVVLKYVAAEKIIVSNML