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IVF0022838 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0022838
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionDNA-directed RNA polymerase subunit beta''
Genome locationchr07:3988473..3988709
RNA-Seq ExpressionIVF0022838
SyntenyIVF0022838
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ABK55745.1 chloroplast RNA polymerase protein, partial [Cucumis sativus]1.13e-2078.18Show/hide
Query:  MIPKRIFIQRLIGRVSADNIYMCPRCIGVRNQDIGIGLINRFITFQTKQYLFGLP
        MIP+RIFIQ LIGRV AD+IYM PRCIGVRNQDIGIGLINRFITFQT+      P
Subjt:  MIPKRIFIQRLIGRVSADNIYMCPRCIGVRNQDIGIGLINRFITFQTKQYLFGLP
OMP13909.1 hypothetical protein COLO4_00652 [Corchorus olitorius]4.73e-2968.83Show/hide
Query:  IPKRIFIQRLIGRVSADNIYMCPRCIGVRNQDIGIGLINRFITFQTKQYLFGLPLLVGVHLGSADYVMDKVLLTGTW
        +P+RIFIQ LIGRV AD+IYM PRCI +RNQDIG+GL++RF+TF+  QYLF  PLLVGVHLG  DYVM  V L  TW
Subjt:  IPKRIFIQRLIGRVSADNIYMCPRCIGVRNQDIGIGLINRFITFQTKQYLFGLPLLVGVHLGSADYVMDKVLLTGTW
YP_004072452.1 RNA polymerase beta II subunit [Corynocarpus laevigatus]5.93e-1974.55Show/hide
Query:  MIPKRIFIQRLIGRVSADNIYMCPRCIGVRNQDIGIGLINRFITFQTKQYLFGLP
        M+P+RIFIQ LIGRV ADNIYM PRCIG+RNQDIGIGL+NRFITFQT+      P
Subjt:  MIPKRIFIQRLIGRVSADNIYMCPRCIGVRNQDIGIGLINRFITFQTKQYLFGLP
YP_009751475.1 RNA polymerase beta'' subunit [Thladiantha dubia]2.33e-1976.36Show/hide
Query:  MIPKRIFIQRLIGRVSADNIYMCPRCIGVRNQDIGIGLINRFITFQTKQYLFGLP
        M+P+RIFIQ LIGRV ADNIYM PRCIG+RNQDIGIGLINRFITFQT+      P
Subjt:  MIPKRIFIQRLIGRVSADNIYMCPRCIGVRNQDIGIGLINRFITFQTKQYLFGLP
YP_009752065.1 RNA polymerase beta'' subunit [Dendrosicyos socotranus]5.93e-1976.36Show/hide
Query:  MIPKRIFIQRLIGRVSADNIYMCPRCIGVRNQDIGIGLINRFITFQTKQYLFGLP
        MIP+RIFIQ LIGRV AD+IYM PRCIG+RNQDIGIGLINRFITFQT+      P
Subjt:  MIPKRIFIQRLIGRVSADNIYMCPRCIGVRNQDIGIGLINRFITFQTKQYLFGLP
TrEMBL top hitse value%identityAlignment
A0A1R3L3P6 DNA-directed RNA polymerase2.8e-2268.83Show/hide
Query:  IPKRIFIQRLIGRVSADNIYMCPRCIGVRNQDIGIGLINRFITFQTKQYLFGLPLLVGVHLGSADYVMDKVLLTGTW
        +P+RIFIQ LIGRV AD+IYM PRCI +RNQDIG+GL++RF+TF+  QYLF  PLLVGVHLG  DYVM  V L  TW
Subjt:  IPKRIFIQRLIGRVSADNIYMCPRCIGVRNQDIGIGLINRFITFQTKQYLFGLPLLVGVHLGSADYVMDKVLLTGTW
A0A1X9Q1J9 DNA-directed RNA polymerase subunit beta''1.3e-1487.5Show/hide
Query:  MIPKRIFIQRLIGRVSADNIYMCPRCIGVRNQDIGIGLINRFITFQTK
        MIP+RIFIQ LIGRV AD+IYM PRCIGVRNQDIGIGLINRFITFQT+
Subjt:  MIPKRIFIQRLIGRVSADNIYMCPRCIGVRNQDIGIGLINRFITFQTK
A0A218KG46 DNA-directed RNA polymerase subunit beta''1.3e-1487.5Show/hide
Query:  MIPKRIFIQRLIGRVSADNIYMCPRCIGVRNQDIGIGLINRFITFQTK
        MIP+RIFIQ LIGRV AD+IYM PRCIGVRNQDIGIGLINRFITFQT+
Subjt:  MIPKRIFIQRLIGRVSADNIYMCPRCIGVRNQDIGIGLINRFITFQTK
A0A249RZW9 DNA-directed RNA polymerase subunit beta''1.3e-1487.5Show/hide
Query:  MIPKRIFIQRLIGRVSADNIYMCPRCIGVRNQDIGIGLINRFITFQTK
        MIP+RIFIQ LIGRV AD+IYM PRCIGVRNQDIGIGLINRFITFQT+
Subjt:  MIPKRIFIQRLIGRVSADNIYMCPRCIGVRNQDIGIGLINRFITFQTK
A0A6H0ERG5 DNA-directed RNA polymerase subunit beta''5.7e-1585.42Show/hide
Query:  MIPKRIFIQRLIGRVSADNIYMCPRCIGVRNQDIGIGLINRFITFQTK
        M+P+RIFIQ LIGRV ADNIYM PRCIG+RNQDIGIGLINRFITFQT+
Subjt:  MIPKRIFIQRLIGRVSADNIYMCPRCIGVRNQDIGIGLINRFITFQTK
SwissProt top hitse value%identityAlignment
B1A925 DNA-directed RNA polymerase subunit beta''5.5e-1568.52Show/hide
Query:  IPKRIFIQRLIGRVSADNIYMCPRCIGVRNQDIGIGLINRFITFQTKQYLFGLP
        +P+RIFIQ LIGRV AD+IYM PRCI +RNQDIGIGL+NRFITF+T+      P
Subjt:  IPKRIFIQRLIGRVSADNIYMCPRCIGVRNQDIGIGLINRFITFQTKQYLFGLP
Q0ZJ30 DNA-directed RNA polymerase subunit beta''1.1e-1579.17Show/hide
Query:  MIPKRIFIQRLIGRVSADNIYMCPRCIGVRNQDIGIGLINRFITFQTK
        MIP+RIFIQ LIGRV AD+IYM PRCI +RNQDIGIGL+NRFITFQ +
Subjt:  MIPKRIFIQRLIGRVSADNIYMCPRCIGVRNQDIGIGLINRFITFQTK
Q14FG7 DNA-directed RNA polymerase subunit beta''7.2e-1579.17Show/hide
Query:  MIPKRIFIQRLIGRVSADNIYMCPRCIGVRNQDIGIGLINRFITFQTK
        MIP+RIFIQ LIGRV ADNIYM  RCI  RNQDIGIGL+NRFITF+T+
Subjt:  MIPKRIFIQRLIGRVSADNIYMCPRCIGVRNQDIGIGLINRFITFQTK
Q49L08 DNA-directed RNA polymerase subunit beta''1.9e-1577.08Show/hide
Query:  MIPKRIFIQRLIGRVSADNIYMCPRCIGVRNQDIGIGLINRFITFQTK
        M+P+RIFIQ LIGRV AD+IYM PRCI +RNQDIGIGL+NRFITF+T+
Subjt:  MIPKRIFIQRLIGRVSADNIYMCPRCIGVRNQDIGIGLINRFITFQTK
Q4VZP3 DNA-directed RNA polymerase subunit beta''3.4e-1787.5Show/hide
Query:  MIPKRIFIQRLIGRVSADNIYMCPRCIGVRNQDIGIGLINRFITFQTK
        MIP+RIFIQ LIGRV AD+IYM PRCIGVRNQDIGIGLINRFITFQT+
Subjt:  MIPKRIFIQRLIGRVSADNIYMCPRCIGVRNQDIGIGLINRFITFQTK
Arabidopsis top hitse value%identityAlignment
ATCG00170.1 DNA-directed RNA polymerase family protein1.5e-1258.18Show/hide
Query:  MIPKRIFIQRLIGRVSADNIYMCPRCIGVRNQDIGIGLINRFITFQTKQYLFGLP
        M+ +RIFIQ LIGRV AD+IY+  RC+  RNQD+GIGL+NR ITF T+      P
Subjt:  MIPKRIFIQRLIGRVSADNIYMCPRCIGVRNQDIGIGLINRFITFQTKQYLFGLP

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTCCAAAAAGAATTTTTATCCAAAGATTAATTGGTCGTGTATCAGCGGACAATATATATATGTGCCCGCGATGCATTGGCGTTCGAAATCAAGATATTGGTATTGG
ACTTATTAATCGATTCATAACCTTTCAAACCAAGCAATATCTATTCGGACTTCCTTTACTTGTAGGAGTACATCTTGGATCTGCCGATTATGTTATGGACAAAGTCCTAC
TCACGGGGACCTGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGATTCCAAAAAGAATTTTTATCCAAAGATTAATTGGTCGTGTATCAGCGGACAATATATATATGTGCCCGCGATGCATTGGCGTTCGAAATCAAGATATTGGTATTGG
ACTTATTAATCGATTCATAACCTTTCAAACCAAGCAATATCTATTCGGACTTCCTTTACTTGTAGGAGTACATCTTGGATCTGCCGATTATGTTATGGACAAAGTCCTAC
TCACGGGGACCTGGTAG
Protein sequenceShow/hide protein sequence
MIPKRIFIQRLIGRVSADNIYMCPRCIGVRNQDIGIGLINRFITFQTKQYLFGLPLLVGVHLGSADYVMDKVLLTGTW