CuGenDBv2

Gene ID	IVF0022924
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	60S ribosomal protein L30
Genome location	chr02:3407711..3409372
RNA-Seq Expression	IVF0022924
Synteny	IVF0022924
Gene Ontology terms	GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR000231 - Ribosomal protein L30e IPR004038 - Ribosomal protein L7Ae/L30e/S12e/Gadd45 IPR022991 - Ribosomal protein L30e, conserved site IPR029064 - 50S ribosomal protein L30e-like IPR039109 - Ribosomal protein L30/YlxQ

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004251199.1 60S ribosomal protein L30 [Solanum lycopersicum]

1.35e-72

99.08

Show/hide

Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNG+NVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMP
        DSDIIKSMP
Subjt:  DSDIIKSMP

XP_008451087.1 PREDICTED: 60S ribosomal protein L30 [Cucumis melo]

1.93e-74

100

Show/hide

Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMPES
        DSDIIKSMPES
Subjt:  DSDIIKSMPES

XP_011660089.1 60S ribosomal protein L30 [Cucumis sativus]

1.12e-73

99.1

Show/hide

Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLR+SKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMPES
        DSDIIKSMPES
Subjt:  DSDIIKSMPES

XP_022960585.1 60S ribosomal protein L30-like [Cucurbita moschata]

1.35e-72

99.08

Show/hide

Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMP
        DSDIIKS+P
Subjt:  DSDIIKSMP

XP_038878626.1 60S ribosomal protein L30 [Benincasa hispida]

4.71e-73

100

Show/hide

Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMP
        DSDIIKSMP
Subjt:  DSDIIKSMP

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LXA9 Ribosomal_L7Ae domain-containing protein

1.2e-55

99.1

Show/hide

Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLR+SKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMPES
        DSDIIKSMPES
Subjt:  DSDIIKSMPES

A0A1S3BQS6 60S ribosomal protein L30

3.2e-56

100

Show/hide

Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMPES
        DSDIIKSMPES
Subjt:  DSDIIKSMPES

A0A3Q7J0N1 Ribosomal_L7Ae domain-containing protein

1.0e-54

99.08

Show/hide

Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNG+NVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMP
        DSDIIKSMP
Subjt:  DSDIIKSMP

A0A5D3CI16 60S ribosomal protein L30

3.2e-56

100

Show/hide

Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMPES
        DSDIIKSMPES
Subjt:  DSDIIKSMPES

A0A6J1JJ11 60S ribosomal protein L30-like

1.0e-54

99.08

Show/hide

Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMP
        DSDIIKS+P
Subjt:  DSDIIKSMP

SwissProt top hits

e value

%identity

Alignment

O48558 60S ribosomal protein L30

6.3e-49

84.4

Show/hide

Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVA KKTKK+ ++INN+L LVMKSGKYTLGYKTVL+TLRNSK KL+IIANNCPPLRKSEIEYYAMLAKV VHH++G+NVDLGTACGKY+RVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMP
        DSDIIK+ P
Subjt:  DSDIIKSMP

O49884 60S ribosomal protein L30

2.0e-55

94.5

Show/hide

Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLK+LR+SKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNG+NVDLGTACGKYYRVCCLSI+DPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMP
        DSDIIK++P
Subjt:  DSDIIKSMP

Q8VZ19 60S ribosomal protein L30-2

2.8e-49

84.4

Show/hide

Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MV  KKTKK+HE IN+RLALVMKSGKYTLGYK+VLK+LR SKGKLI+I+ NCPPLR+SEIEYYAMLAKVGVHHYNG+NVDLGTACGKY+RV CLSI+DPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMP
        DSDIIKS+P
Subjt:  DSDIIKSMP

Q9C8F7 Putative 60S ribosomal protein L30-1

9.8e-50

85.32

Show/hide

Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKK+HE IN+RLALVMKSGKYTLGYK+VLK+LR+SKGKLI+I++NCPPLR+SEIEYYAMLAKVGVHHYN +NVDLGTACGKY+RV CLSI+DPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMP
        DSDIIKS+P
Subjt:  DSDIIKSMP

Q9M5M6 60S ribosomal protein L30

1.6e-52

90.83

Show/hide

Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESIN+RLALVMKSGK+TLGYKTVL++LR++KGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNG+NVDLGTACGKY+RVCCLSIID G
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMP
        DSDIIKS+P
Subjt:  DSDIIKSMP

Arabidopsis top hits

e value

%identity

Alignment

AT1G36240.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

6.9e-51

85.32

Show/hide

Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKK+HE IN+RLALVMKSGKYTLGYK+VLK+LR+SKGKLI+I++NCPPLR+SEIEYYAMLAKVGVHHYN +NVDLGTACGKY+RV CLSI+DPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMP
        DSDIIKS+P
Subjt:  DSDIIKSMP

AT1G77940.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

2.0e-50

84.4

Show/hide

Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MV  KKTKK+HE IN+RLALVMKSGKYTLGYK+VLK+LR SKGKLI+I+ NCPPLR+SEIEYYAMLAKVGVHHYNG+NVDLGTACGKY+RV CLSI+DPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMP
        DSDIIKS+P
Subjt:  DSDIIKSMP

AT3G18740.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

2.2e-49

82.57

Show/hide

Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVA KK KK+HE IN+RLALVMKSGKYTLGYK+VLK+LR+SKGKLI+I++NCPPLR+SEIEYYAMLAKVGVH YNG+NVDLGTACGKY+RV CLSI+DPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMP
        DSDIIK++P
Subjt:  DSDIIKSMP

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGTGGCCGCTAAGAAGACCAAGAAGACCCATGAAAGCATCAACAACAGACTCGCTCTCGTCATGAAGAGTGGGAAATACACCTTGGGATACAAAACCGTCCTCAAAAC
CTTGAGGAACTCTAAAGGTAAGCTGATCATCATTGCCAACAACTGCCCTCCACTCCGAAAGTCCGAGATCGAATACTATGCAATGTTGGCCAAGGTTGGAGTTCACCATT
ACAATGGGAGCAATGTTGACCTTGGAACCGCATGTGGCAAATACTACAGAGTATGCTGCCTCAGCATTATCGACCCTGGTGATTCGGATATTATCAAGAGCATGCCCGAA
AGTTAG

mRNA sequence

Show/hide mRNA sequence

GCCGTTCATTTGGCGAGTGCAGCTTCGAGTCTTCAATCATGGTGGCCGCTAAGAAGACCAAGAAGACCCATGAAAGCATCAACAACAGACTCGCTCTCGTCATGAAGAGT
GGGAAATACACCTTGGGATACAAAACCGTCCTCAAAACCTTGAGGAACTCTAAAGGTAAGCTGATCATCATTGCCAACAACTGCCCTCCACTCCGAAAGTCCGAGATCGA
ATACTATGCAATGTTGGCCAAGGTTGGAGTTCACCATTACAATGGGAGCAATGTTGACCTTGGAACCGCATGTGGCAAATACTACAGAGTATGCTGCCTCAGCATTATCG
ACCCTGGTGATTCGGATATTATCAAGAGCATGCCCGAAAGTTAGATTTCAACTTCGTTTTAAGATCATAGAATTTTGTTTCAGAGTTTCTTCTTGATTTTGGGTTCAATG
TAGTGATGTGTTTTTGCTTGTGAGGCATGATATTATTGAACAAATGGTTTCATTATAAACCCTTTTTTTATTGTTCAAGATCATCTTATTCCAAAAAACTTTCGTATCAA
CCTTTGTGTTATATTAGCCTCGTAACAGTTAACCGTACAAGCATGTTACCTCCTTATATTTTATCGTTCTATTGTTA

Protein sequence

Show/hide protein sequence

MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPE
S

IVF0022924 (gene) of Melon (IVF77) v1 genome