; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0022967 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0022967
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr03:19673301..19673468
RNA-Seq ExpressionIVF0022967
SyntenyIVF0022967
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031725.1 retrotransposon protein [Cucumis melo var. makuwa]1.64e-2892.73Show/hide
Query:  MTYCNDVNDVDEGDSTYSTTTASEDIQYIETTNEWSQWRDKLVESMFTDWQLRNA
        MTYCNDVNDVDEGDSTYSTTTASEDIQYIETTNEWSQWRDKLVESMFTDWQ+  +
Subjt:  MTYCNDVNDVDEGDSTYSTTTASEDIQYIETTNEWSQWRDKLVESMFTDWQLRNA

KAA0033264.1 retrotransposon protein [Cucumis melo var. makuwa]1.46e-2689.09Show/hide
Query:  MTYCNDVNDVDEGDSTYSTTTASEDIQYIETTNEWSQWRDKLVESMFTDWQLRNA
        MTYCNDV D DEGDSTY+TTTASEDIQYIETTN+WSQWRD L ESMFTDWQLRNA
Subjt:  MTYCNDVNDVDEGDSTYSTTTASEDIQYIETTNEWSQWRDKLVESMFTDWQLRNA

KAA0054051.1 retrotransposon protein [Cucumis melo var. makuwa]3.48e-2785.45Show/hide
Query:  MTYCNDVNDVDEGDSTYSTTTASEDIQYIETTNEWSQWRDKLVESMFTDWQLRNA
        MTYC+D++DVDEGDS Y+TTTASEDI YIETTNEWSQWRD+L ESMFTDWQLRNA
Subjt:  MTYCNDVNDVDEGDSTYSTTTASEDIQYIETTNEWSQWRDKLVESMFTDWQLRNA

TYK05336.1 retrotransposon protein [Cucumis melo var. makuwa]2.07e-2687.27Show/hide
Query:  MTYCNDVNDVDEGDSTYSTTTASEDIQYIETTNEWSQWRDKLVESMFTDWQLRNA
        MTYC DV+D DEGDSTY+TTTASEDIQYIETTNEWSQWRD L ESMFTDWQLRN+
Subjt:  MTYCNDVNDVDEGDSTYSTTTASEDIQYIETTNEWSQWRDKLVESMFTDWQLRNA

TYK11987.1 retrotransposon protein [Cucumis melo var. makuwa]2.07e-2687.27Show/hide
Query:  MTYCNDVNDVDEGDSTYSTTTASEDIQYIETTNEWSQWRDKLVESMFTDWQLRNA
        MTYCNDV+D DEGDSTY+TTTASEDIQYIETTNEWSQWR+ L ESMFT+WQLRNA
Subjt:  MTYCNDVNDVDEGDSTYSTTTASEDIQYIETTNEWSQWRDKLVESMFTDWQLRNA

TrEMBL top hitse value%identityAlignment
A0A5A7TDH3 Retrotransposon protein1.1e-2092.59Show/hide
Query:  TYCNDVNDVDEGDSTYSTTTASEDIQYIETTNEWSQWRDKLVESMFTDWQLRNA
        TYCNDVNDVDEGDSTY+TTTASEDI YIETTNEWSQWR+KL ESMFTDWQLRNA
Subjt:  TYCNDVNDVDEGDSTYSTTTASEDIQYIETTNEWSQWRDKLVESMFTDWQLRNA

A0A5A7VDR4 Retrotransposon protein4.1e-2089.09Show/hide
Query:  MTYCNDVNDVDEGDSTYSTTTASEDIQYIETTNEWSQWRDKLVESMFTDWQLRNA
        MTYC DVNDVDEGDSTY+TTTASEDI YIETTNEWSQW D+LV+SMFTDWQLRNA
Subjt:  MTYCNDVNDVDEGDSTYSTTTASEDIQYIETTNEWSQWRDKLVESMFTDWQLRNA

A0A5D3BAK8 Retrotransposon protein4.1e-2089.09Show/hide
Query:  MTYCNDVNDVDEGDSTYSTTTASEDIQYIETTNEWSQWRDKLVESMFTDWQLRNA
        MTYC DVNDVDEGDSTY+TTTASEDI YIETTNEWSQW D+LV+SMFTDWQLRNA
Subjt:  MTYCNDVNDVDEGDSTYSTTTASEDIQYIETTNEWSQWRDKLVESMFTDWQLRNA

A0A5D3CKW5 Retrotransposon protein3.7e-2198.08Show/hide
Query:  MTYCNDVNDVDEGDSTYSTTTASEDIQYIETTNEWSQWRDKLVESMFTDWQL
        MTYCNDVNDVDEGDSTYSTTTASEDIQYIETTNEWSQWRDKLVESMFTDWQ+
Subjt:  MTYCNDVNDVDEGDSTYSTTTASEDIQYIETTNEWSQWRDKLVESMFTDWQL

A0A5D3CVA3 Retrotransposon protein1.1e-2092.59Show/hide
Query:  TYCNDVNDVDEGDSTYSTTTASEDIQYIETTNEWSQWRDKLVESMFTDWQLRNA
        TYCNDVNDVDEGDSTY+TTTASEDI YIETTNEWSQWR+KL ESMFTDWQLRNA
Subjt:  TYCNDVNDVDEGDSTYSTTTASEDIQYIETTNEWSQWRDKLVESMFTDWQLRNA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACATATTGCAACGACGTTAACGACGTGGACGAGGGAGACTCCACGTACTCGACGACCACCGCTTCAGAAGACATTCAATATATTGAGACGACAAACGAGTGGTCTCA
GTGGCGCGACAAACTAGTCGAATCAATGTTCACTGATTGGCAGTTACGTAACGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGACATATTGCAACGACGTTAACGACGTGGACGAGGGAGACTCCACGTACTCGACGACCACCGCTTCAGAAGACATTCAATATATTGAGACGACAAACGAGTGGTCTCA
GTGGCGCGACAAACTAGTCGAATCAATGTTCACTGATTGGCAGTTACGTAACGCTTAG
Protein sequenceShow/hide protein sequence
MTYCNDVNDVDEGDSTYSTTTASEDIQYIETTNEWSQWRDKLVESMFTDWQLRNA