; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0023001 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0023001
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr04:17131363..17131755
RNA-Seq ExpressionIVF0023001
SyntenyIVF0023001
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR025314 - Domain of unknown function DUF4219


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026102.1 putative copia-type polyprotein [Cucumis melo var. makuwa]7.93e-7193.08Show/hide
Query:  MANNNLVPFQLPRLTNENYSSWCIRMKALLGSQDVWDIVNNRYEEPESDAALNQAQREALQNTRKKDQKALSIIHQAIDDNNFEKISEATTAYQAWKILE
        MANNNLVPFQ+PRLT ENYSSWCIRMKALLGSQDVWDIV+N YEEPESDAALNQAQREALQNTRKKDQKAL+IIHQAIDDNNFEKIS ATTAYQAW+ILE
Subjt:  MANNNLVPFQLPRLTNENYSSWCIRMKALLGSQDVWDIVNNRYEEPESDAALNQAQREALQNTRKKDQKALSIIHQAIDDNNFEKISEATTAYQAWKILE

Query:  NTYKGVNRVKKVHLQKLRGDYESLHMKESE
        NTYKGV+RVKKV LQKLRGDYESLHMKESE
Subjt:  NTYKGVNRVKKVHLQKLRGDYESLHMKESE
KAA0038956.1 copia protein [Cucumis melo var. makuwa]3.99e-7392.31Show/hide
Query:  MANNNLVPFQLPRLTNENYSSWCIRMKALLGSQDVWDIVNNRYEEPESDAALNQAQREALQNTRKKDQKALSIIHQAIDDNNFEKISEATTAYQAWKILE
        MANNNLVP Q+PRLT ENYSSWCIRMKALLGSQDVWDIV+N YEEPESDAALNQAQREALQNTRKKDQKAL+IIHQAIDDNNFEKIS ATTAYQAWKILE
Subjt:  MANNNLVPFQLPRLTNENYSSWCIRMKALLGSQDVWDIVNNRYEEPESDAALNQAQREALQNTRKKDQKALSIIHQAIDDNNFEKISEATTAYQAWKILE

Query:  NTYKGVNRVKKVHLQKLRGDYESLHMKESE
        NTYKGV R+KKV LQKLRGDYESLHMKESE
Subjt:  NTYKGVNRVKKVHLQKLRGDYESLHMKESE
KAA0051409.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.76e-7894.62Show/hide
Query:  MANNNLVPFQLPRLTNENYSSWCIRMKALLGSQDVWDIVNNRYEEPESDAALNQAQREALQNTRKKDQKALSIIHQAIDDNNFEKISEATTAYQAWKILE
        MANNNLVPFQ+PRLT ENYSSWCIRMKALLGSQDVWDIV+N YEEPESDAALNQAQREALQNTRKKDQKAL+IIHQAIDDNNFEKIS ATTAYQAWKILE
Subjt:  MANNNLVPFQLPRLTNENYSSWCIRMKALLGSQDVWDIVNNRYEEPESDAALNQAQREALQNTRKKDQKALSIIHQAIDDNNFEKISEATTAYQAWKILE

Query:  NTYKGVNRVKKVHLQKLRGDYESLHMKESE
        NTYKGV+RVKKVHLQKLRGDYESLHMKESE
Subjt:  NTYKGVNRVKKVHLQKLRGDYESLHMKESE
TYK13816.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.30e-7093.08Show/hide
Query:  MANNNLVPFQLPRLTNENYSSWCIRMKALLGSQDVWDIVNNRYEEPESDAALNQAQREALQNTRKKDQKALSIIHQAIDDNNFEKISEATTAYQAWKILE
        MANNNLVPFQ+PRLT ENYSSWCIRMKALLGSQDVWDIV+N YEEPESDAALNQAQREALQNTRKKDQKAL+IIHQAIDDNNFEKIS ATTAYQAW+ILE
Subjt:  MANNNLVPFQLPRLTNENYSSWCIRMKALLGSQDVWDIVNNRYEEPESDAALNQAQREALQNTRKKDQKALSIIHQAIDDNNFEKISEATTAYQAWKILE

Query:  NTYKGVNRVKKVHLQKLRGDYESLHMKESE
        NTYKGV+RVKKV LQKLRGDYESLHMKESE
Subjt:  NTYKGVNRVKKVHLQKLRGDYESLHMKESE
XP_008456214.1 PREDICTED: uncharacterized protein LOC103496217, partial [Cucumis melo]8.74e-7591.54Show/hide
Query:  MANNNLVPFQLPRLTNENYSSWCIRMKALLGSQDVWDIVNNRYEEPESDAALNQAQREALQNTRKKDQKALSIIHQAIDDNNFEKISEATTAYQAWKILE
        MANNNLVP Q+PRLT ENYSSWCIRMKALLGSQDVWDIV+N YEEPESDA+LNQAQREALQNTRKKDQKAL+IIHQAIDDNNFEKIS ATTAYQAWKILE
Subjt:  MANNNLVPFQLPRLTNENYSSWCIRMKALLGSQDVWDIVNNRYEEPESDAALNQAQREALQNTRKKDQKALSIIHQAIDDNNFEKISEATTAYQAWKILE

Query:  NTYKGVNRVKKVHLQKLRGDYESLHMKESE
        NTYKGV R+KKV LQKLRGDYESLHMKESE
Subjt:  NTYKGVNRVKKVHLQKLRGDYESLHMKESE
TrEMBL top hitse value%identityAlignment
A0A5A7SLT1 Putative copia-type polyprotein3.9e-6193.08Show/hide
Query:  MANNNLVPFQLPRLTNENYSSWCIRMKALLGSQDVWDIVNNRYEEPESDAALNQAQREALQNTRKKDQKALSIIHQAIDDNNFEKISEATTAYQAWKILE
        MANNNLVPFQ+PRLT ENYSSWCIRMKALLGSQDVWDIV+N YEEPESDAALNQAQREALQNTRKKDQKAL+IIHQAIDDNNFEKIS ATTAYQAW+ILE
Subjt:  MANNNLVPFQLPRLTNENYSSWCIRMKALLGSQDVWDIVNNRYEEPESDAALNQAQREALQNTRKKDQKALSIIHQAIDDNNFEKISEATTAYQAWKILE

Query:  NTYKGVNRVKKVHLQKLRGDYESLHMKESE
        NTYKGV+RVKKV LQKLRGDYESLHMKESE
Subjt:  NTYKGVNRVKKVHLQKLRGDYESLHMKESE
A0A5A7TA92 Copia protein2.5e-6092.31Show/hide
Query:  MANNNLVPFQLPRLTNENYSSWCIRMKALLGSQDVWDIVNNRYEEPESDAALNQAQREALQNTRKKDQKALSIIHQAIDDNNFEKISEATTAYQAWKILE
        MANNNLVP Q+PRLT ENYSSWCIRMKALLGSQDVWDIV+N YEEPESDAALNQAQREALQNTRKKDQKAL+IIHQAIDDNNFEKIS ATTAYQAWKILE
Subjt:  MANNNLVPFQLPRLTNENYSSWCIRMKALLGSQDVWDIVNNRYEEPESDAALNQAQREALQNTRKKDQKALSIIHQAIDDNNFEKISEATTAYQAWKILE

Query:  NTYKGVNRVKKVHLQKLRGDYESLHMKESE
        NTYKGV R+KKV LQKLRGDYESLHMKESE
Subjt:  NTYKGVNRVKKVHLQKLRGDYESLHMKESE
A0A5A7UDA0 Retrovirus-related Pol polyprotein from transposon TNT 1-941.6e-6294.62Show/hide
Query:  MANNNLVPFQLPRLTNENYSSWCIRMKALLGSQDVWDIVNNRYEEPESDAALNQAQREALQNTRKKDQKALSIIHQAIDDNNFEKISEATTAYQAWKILE
        MANNNLVPFQ+PRLT ENYSSWCIRMKALLGSQDVWDIV+N YEEPESDAALNQAQREALQNTRKKDQKAL+IIHQAIDDNNFEKIS ATTAYQAWKILE
Subjt:  MANNNLVPFQLPRLTNENYSSWCIRMKALLGSQDVWDIVNNRYEEPESDAALNQAQREALQNTRKKDQKALSIIHQAIDDNNFEKISEATTAYQAWKILE

Query:  NTYKGVNRVKKVHLQKLRGDYESLHMKESE
        NTYKGV+RVKKVHLQKLRGDYESLHMKESE
Subjt:  NTYKGVNRVKKVHLQKLRGDYESLHMKESE
A0A5A7V277 Retrovirus-related Pol polyprotein from transposon TNT 1-943.9e-6193.08Show/hide
Query:  MANNNLVPFQLPRLTNENYSSWCIRMKALLGSQDVWDIVNNRYEEPESDAALNQAQREALQNTRKKDQKALSIIHQAIDDNNFEKISEATTAYQAWKILE
        MANNNLVPFQ+PRLT ENYSSWCIRMKALLGSQDVWDIV+N YEEPESDAALNQAQREALQNTRKKDQKAL+IIHQAIDDNNFEKIS ATTAYQAW+ILE
Subjt:  MANNNLVPFQLPRLTNENYSSWCIRMKALLGSQDVWDIVNNRYEEPESDAALNQAQREALQNTRKKDQKALSIIHQAIDDNNFEKISEATTAYQAWKILE

Query:  NTYKGVNRVKKVHLQKLRGDYESLHMKESE
        NTYKGV+RVKKV LQKLRGDYESLHMKESE
Subjt:  NTYKGVNRVKKVHLQKLRGDYESLHMKESE
A0A5D3CTU3 Retrovirus-related Pol polyprotein from transposon TNT 1-943.9e-6193.08Show/hide
Query:  MANNNLVPFQLPRLTNENYSSWCIRMKALLGSQDVWDIVNNRYEEPESDAALNQAQREALQNTRKKDQKALSIIHQAIDDNNFEKISEATTAYQAWKILE
        MANNNLVPFQ+PRLT ENYSSWCIRMKALLGSQDVWDIV+N YEEPESDAALNQAQREALQNTRKKDQKAL+IIHQAIDDNNFEKIS ATTAYQAW+ILE
Subjt:  MANNNLVPFQLPRLTNENYSSWCIRMKALLGSQDVWDIVNNRYEEPESDAALNQAQREALQNTRKKDQKALSIIHQAIDDNNFEKISEATTAYQAWKILE

Query:  NTYKGVNRVKKVHLQKLRGDYESLHMKESE
        NTYKGV+RVKKV LQKLRGDYESLHMKESE
Subjt:  NTYKGVNRVKKVHLQKLRGDYESLHMKESE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G48720.1 unknown protein8.5e-2452.17Show/hide
Query:  MANNNLVPFQLPRLTNENYSSWCIRMKALLGSQDVWDIVNNRYEEPESDAALNQAQREALQNTRKKDQKALSIIHQAIDDNNFEKISEATTA
        MA+NN VPFQ+P LT  NY +W +RMKA+LG+ DVW+IV   + EPE++ +L+Q Q++ L+++RK+D+KAL +I+Q +D++ FEK+ EAT+A
Subjt:  MANNNLVPFQLPRLTNENYSSWCIRMKALLGSQDVWDIVNNRYEEPESDAALNQAQREALQNTRKKDQKALSIIHQAIDDNNFEKISEATTA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAACAACAATTTAGTTCCCTTCCAACTACCTCGACTTACGAACGAAAATTATAGTAGTTGGTGTATTCGAATGAAAGCTCTACTTGGTTCACAAGATGTG
TGGGACATTGTTAATAATCGTTATGAAGAACCAGAAAGTGATGCAGCTTTGAATCAAGCTCAACGAGAAGCTTTACAAAATACAAGAAAAAAAGATCAAAAGGCT
CTCAGCATCATTCATCAAGCCATTGATGATAACAATTTTGAGAAAATTTCTGAAGCAACTACTGCATATCAAGCATGGAAAATTTTGGAGAATACGTATAAAGGA
GTAAATCGAGTCAAGAAGGTTCACCTTCAAAAATTGAGAGGTGATTATGAATCACTACATATGAAGGAGTCTGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAACAACAATTTAGTTCCCTTCCAACTACCTCGACTTACGAACGAAAATTATAGTAGTTGGTGTATTCGAATGAAAGCTCTACTTGGTTCACAAGATGTG
TGGGACATTGTTAATAATCGTTATGAAGAACCAGAAAGTGATGCAGCTTTGAATCAAGCTCAACGAGAAGCTTTACAAAATACAAGAAAAAAAGATCAAAAGGCT
CTCAGCATCATTCATCAAGCCATTGATGATAACAATTTTGAGAAAATTTCTGAAGCAACTACTGCATATCAAGCATGGAAAATTTTGGAGAATACGTATAAAGGA
GTAAATCGAGTCAAGAAGGTTCACCTTCAAAAATTGAGAGGTGATTATGAATCACTACATATGAAGGAGTCTGAATGA
Protein sequenceShow/hide protein sequence
MANNNLVPFQLPRLTNENYSSWCIRMKALLGSQDVWDIVNNRYEEPESDAALNQAQREALQNTRKKDQKALSIIHQAIDDNNFEKISEATTAYQAWKILENTYKG
VNRVKKVHLQKLRGDYESLHMKESE