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IVF0023003 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0023003
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon opus
Genome locationchr09:12865636..12865953
RNA-Seq ExpressionIVF0023003
SyntenyIVF0023003
Gene Ontology termsGO:0016491 - oxidoreductase activity (molecular function)
InterPro domainsIPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KIO93805.1 hypothetical protein QP38_2413 [Levilactobacillus brevis]4.71e-3562.92Show/hide
Query:  VSHDKTKIDVIQKLPYPTCLKDVRSFLGSDGFYRRFIKDFSKITLPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNFTF
        +  DK K+D I+K+PYPT +K +RSFLG DGFYRRFIKDFSKI  PLTNLLQKD+PF+ DD+C++AF+ LK+ L++ PI+Q P+WN  F
Subjt:  VSHDKTKIDVIQKLPYPTCLKDVRSFLGSDGFYRRFIKDFSKITLPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNFTF

KYP78612.1 Retrovirus-related Pol polyprotein from transposon opus [Cajanus cajan]1.32e-3261.8Show/hide
Query:  VSHDKTKIDVIQKLPYPTCLKDVRSFLGSDGFYRRFIKDFSKITLPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNFTF
        +  D  KI VI +LPYP+C++DVRSFLG  GFYRRFIKDFSK  LPL++LLQKD+ F  DD CK+AFD L++ L +TPI+Q+PNW   F
Subjt:  VSHDKTKIDVIQKLPYPTCLKDVRSFLGSDGFYRRFIKDFSKITLPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNFTF

MCH92231.1 hypothetical protein [Trifolium medium]9.06e-3365.12Show/hide
Query:  DKTKIDVIQKLPYPTCLKDVRSFLGSDGFYRRFIKDFSKITLPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNFTF
        D  KIDVI  LP+PTC++++RSFLG  GFYRRFIKDFSKI LPL+NLLQKD+ F  DD CK+AFD LK+ L STP++Q P+W   F
Subjt:  DKTKIDVIQKLPYPTCLKDVRSFLGSDGFYRRFIKDFSKITLPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNFTF

WP_042516810.1 reverse transcriptase, partial [Levilactobacillus brevis]7.66e-3562.92Show/hide
Query:  VSHDKTKIDVIQKLPYPTCLKDVRSFLGSDGFYRRFIKDFSKITLPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNFTF
        +  DK K+D I+K+PYPT +K +RSFLG DGFYRRFIKDFSKI  PLTNLLQKD+PF+ DD+C++AF+ LK+ L++ PI+Q P+WN  F
Subjt:  VSHDKTKIDVIQKLPYPTCLKDVRSFLGSDGFYRRFIKDFSKITLPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNFTF

XP_027343093.1 uncharacterized protein LOC113855660 [Abrus precatorius]8.85e-3364.04Show/hide
Query:  VSHDKTKIDVIQKLPYPTCLKDVRSFLGSDGFYRRFIKDFSKITLPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNFTF
        ++ D +KIDVI  LPYPTC+++VRSFLG  GFYRRFI+ FSKITLPL+ LLQKD+ F  DD C++AFD LKQ L+S  +LQSPNW + F
Subjt:  VSHDKTKIDVIQKLPYPTCLKDVRSFLGSDGFYRRFIKDFSKITLPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNFTF

TrEMBL top hitse value%identityAlignment
A0A0L9TXH6 Reverse transcriptase3.7e-2665.12Show/hide
Query:  DKTKIDVIQKLPYPTCLKDVRSFLGSDGFYRRFIKDFSKITLPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNFTF
        D  KI VI +LPYP+C+++VRSFLG  GFYRRFIKDFSK TLPL+ LLQKD+ F  DD CK+AFD LKQ L++TPI+Q+P+W   F
Subjt:  DKTKIDVIQKLPYPTCLKDVRSFLGSDGFYRRFIKDFSKITLPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNFTF

A0A1R3HLK0 Retrotransposon gag protein6.3e-2662.79Show/hide
Query:  DKTKIDVIQKLPYPTCLKDVRSFLGSDGFYRRFIKDFSKITLPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNFTF
        DK K+DV+Q LPYPTC+KD+RSFLG  GFYRRFIKDFSKI+ P+  LLQKD+ F   D+CK+AFD LK  L +TPI++ P+W   F
Subjt:  DKTKIDVIQKLPYPTCLKDVRSFLGSDGFYRRFIKDFSKITLPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNFTF

A0A2G9HW16 DNA-directed DNA polymerase6.3e-2666.28Show/hide
Query:  DKTKIDVIQKLPYPTCLKDVRSFLGSDGFYRRFIKDFSKITLPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNFTF
        DK KI+VI+ LPYP  +++VRSFLG  GFYR+FIKDFSKIT PL  LLQKDVPF  D  CK+AFD+LK+ L S PI+Q PNWN  F
Subjt:  DKTKIDVIQKLPYPTCLKDVRSFLGSDGFYRRFIKDFSKITLPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNFTF

A0A2U1NRI2 Reverse transcriptase2.8e-2666.28Show/hide
Query:  DKTKIDVIQKLPYPTCLKDVRSFLGSDGFYRRFIKDFSKITLPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNFTF
        DK K+DVI KLP PT +K +RSFLG  GFYRRFIKDFSKI  PLT LL+KD+PF  DD C+KAF+ LK++L  TPI+ SPNWN  F
Subjt:  DKTKIDVIQKLPYPTCLKDVRSFLGSDGFYRRFIKDFSKITLPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNFTF

A0A392MXJ5 Uncharacterized protein (Fragment)1.3e-2665.12Show/hide
Query:  DKTKIDVIQKLPYPTCLKDVRSFLGSDGFYRRFIKDFSKITLPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNFTF
        D  KIDVI  LP+PTC++++RSFLG  GFYRRFIKDFSKI LPL+NLLQKD+ F  DD CK+AFD LK+ L STP++Q P+W   F
Subjt:  DKTKIDVIQKLPYPTCLKDVRSFLGSDGFYRRFIKDFSKITLPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNFTF

SwissProt top hitse value%identityAlignment
P03359 Gag-Pol polyprotein3.6e-1039.19Show/hide
Query:  IQKLPYPTCLKDVRSFLGSDGFYRRFIKDFSKITLPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPN
        + K+P PT  + VR FLG+ GF R +I  F+ +  PL  L ++ +PF+  +  +KAFD +K+ L+S P L  P+
Subjt:  IQKLPYPTCLKDVRSFLGSDGFYRRFIKDFSKITLPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPN

P04323 Retrovirus-related Pol polyprotein from transposon 17.64.7e-1038.1Show/hide
Query:  KIDVIQKLPYPTCLKDVRSFLGSDGFYRRFIKDFSKITLPLTNLLQKDVPF-LIDDNCKKAFDDLKQRLVSTPILQSPNWNFTF
        KI+ IQK P PT  K++++FLG  G+YR+FI +F+ I  P+T  L+K++     +     AF  LK  +   PIL+ P++   F
Subjt:  KIDVIQKLPYPTCLKDVRSFLGSDGFYRRFIKDFSKITLPLTNLLQKDVPF-LIDDNCKKAFDDLKQRLVSTPILQSPNWNFTF

P10394 Retrovirus-related Pol polyprotein from transposon 4122.9e-1240.7Show/hide
Query:  DKTKIDVIQKLPYPTCLKDVRSFLGSDGFYRRFIKDFSKITLPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNFTF
        D  K DVIQ  P P      R F+    +YRRFIK+F+  +  +T L +K+VPF   D C+KAF  LK +L++  +LQ P+++  F
Subjt:  DKTKIDVIQKLPYPTCLKDVRSFLGSDGFYRRFIKDFSKITLPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNFTF

P21414 Gag-Pol polyprotein6.1e-1037.84Show/hide
Query:  IQKLPYPTCLKDVRSFLGSDGFYRRFIKDFSKITLPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPN
        + K+P PT  + VR FLG+ GF R +I  F+ +  PL  L ++ +PF+  +  ++AFD +K+ L+S P L  P+
Subjt:  IQKLPYPTCLKDVRSFLGSDGFYRRFIKDFSKITLPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPN

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus8.5e-1235.11Show/hide
Query:  VSHDKTKIDVIQKLPYPTCLKDVRSFLGSDGFYRRFIKDFSKITLPLTNLLQ-----------KDVPFLIDDNCKKAFDDLKQRLVSTPILQSP
        +  D  K+  I ++P PT +K+++ FLG   +YR+FI+D++K+  PLTNL +             VP  +D+   ++F+DLK  L S+ IL  P
Subjt:  VSHDKTKIDVIQKLPYPTCLKDVRSFLGSDGFYRRFIKDFSKITLPLTNLLQ-----------KDVPFLIDDNCKKAFDDLKQRLVSTPILQSP

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein3.7e-1035.96Show/hide
Query:  VSHDKTKIDVIQKLPYPTCLKDVRSFLGSDGFYRRFIKDFSKITLPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNFTF
        VS D  K++ +   P P    ++R FLG  G+YRRF+K++ KI  PLT LL+K+      +    AF  LK  + + P+L  P+    F
Subjt:  VSHDKTKIDVIQKLPYPTCLKDVRSFLGSDGFYRRFIKDFSKITLPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNFTF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTCTCATGATAAAACAAAAATTGACGTTATACAAAAATTGCCATATCCAACATGTTTAAAAGATGTTAGATCCTTCCTTGGTAGTGACGGCTTTTATAGACGGTT
TATAAAAGATTTTTCTAAAATCACTTTGCCTCTAACTAATCTCTTGCAAAAAGATGTACCATTTCTGATTGATGACAATTGTAAGAAAGCATTTGATGATCTCAAACAAA
GGTTAGTCTCTACCCCTATCCTTCAATCTCCTAATTGGAATTTTACCTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTCTCATGATAAAACAAAAATTGACGTTATACAAAAATTGCCATATCCAACATGTTTAAAAGATGTTAGATCCTTCCTTGGTAGTGACGGCTTTTATAGACGGTT
TATAAAAGATTTTTCTAAAATCACTTTGCCTCTAACTAATCTCTTGCAAAAAGATGTACCATTTCTGATTGATGACAATTGTAAGAAAGCATTTGATGATCTCAAACAAA
GGTTAGTCTCTACCCCTATCCTTCAATCTCCTAATTGGAATTTTACCTTTTGA
Protein sequenceShow/hide protein sequence
MVSHDKTKIDVIQKLPYPTCLKDVRSFLGSDGFYRRFIKDFSKITLPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPNWNFTF