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IVF0023047 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0023047
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionprotein RADIALIS-like 1
Genome locationchr01:16593652..16593897
RNA-Seq ExpressionIVF0023047
SyntenyIVF0023047
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017884 - SANT domain
IPR017930 - Myb domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036165.1 protein RADIALIS-like 1 [Cucumis melo var. makuwa]1.02e-3982.05Show/hide
Query:  MPSMSAHG-STQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLEDVNHIENGQIPFPYRNST
        M SM+AHG ST WTA +NKAFEKALA+YDKDTPERWLNVAKAIGGKTEE+VKRHYQLL+EDV HIE+G+IPFPYR  T
Subjt:  MPSMSAHG-STQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLEDVNHIENGQIPFPYRNST

KAA0036170.1 protein RADIALIS-like 1 [Cucumis melo var. makuwa]1.05e-3981.58Show/hide
Query:  MPSMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLEDVNHIENGQIPFPYRNS
        M SMSAHGS  WTA +NKAFE+ALA+YDKDTP+RWLNVAKAIGGKTEE+VKRHYQLLLEDV HIE+G++PFPYR S
Subjt:  MPSMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLEDVNHIENGQIPFPYRNS

KAE8645640.1 hypothetical protein Csa_020521 [Cucumis sativus]6.87e-4181.48Show/hide
Query:  MPSMSAHG-STQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLEDVNHIENGQIPFPYRNSTRSS
        M SM+AHG ST WT  +NKAFEKALA+YDKDTPERWLNVAKAIGGKTEE+VK HYQLL+EDV HIE+G+IPFPYR STRSS
Subjt:  MPSMSAHG-STQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLEDVNHIENGQIPFPYRNSTRSS

XP_008447025.1 PREDICTED: protein RADIALIS-like 1 [Cucumis melo]2.57e-4082.89Show/hide
Query:  MPSMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLEDVNHIENGQIPFPYRNS
        M SMSAHGS  WTA +NKAFEKALA+YDKDTP+RWLNVAKAIGGKTEE+VKRHYQLLLEDV HIE+G++PFPYR S
Subjt:  MPSMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLEDVNHIENGQIPFPYRNS

XP_008447026.1 PREDICTED: protein RADIALIS-like 1 [Cucumis melo]2.39e-5298.77Show/hide
Query:  MPSMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLEDVNHIENGQIPFPYRNSTRSSR
        M SMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLEDVNHIENGQIPFPYRNSTRSSR
Subjt:  MPSMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLEDVNHIENGQIPFPYRNSTRSSR

TrEMBL top hitse value%identityAlignment
A0A0A0K3K0 SANT domain-containing protein2.3e-3592.59Show/hide
Query:  MPSMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLEDVNHIENGQIPFPYRNSTRSSR
        M SMSAHGS+ WTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEE+VKRHYQLLLEDVNHIE+GQIPFPYR STRSSR
Subjt:  MPSMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLEDVNHIENGQIPFPYRNSTRSSR

A0A1S3BGF0 protein RADIALIS-like 12.9e-3898.77Show/hide
Query:  MPSMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLEDVNHIENGQIPFPYRNSTRSSR
        M SMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLEDVNHIENGQIPFPYRNSTRSSR
Subjt:  MPSMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLEDVNHIENGQIPFPYRNSTRSSR

A0A1S3BGF6 protein RADIALIS-like 14.2e-2982.89Show/hide
Query:  MPSMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLEDVNHIENGQIPFPYRNS
        M SMSAHGS  WTA +NKAFEKALA+YDKDTP+RWLNVAKAIGGKTEE+VKRHYQLLLEDV HIE+G++PFPYR S
Subjt:  MPSMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLEDVNHIENGQIPFPYRNS

A0A5A7SYM4 Protein RADIALIS-like 11.2e-2881.58Show/hide
Query:  MPSMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLEDVNHIENGQIPFPYRNS
        M SMSAHGS  WTA +NKAFE+ALA+YDKDTP+RWLNVAKAIGGKTEE+VKRHYQLLLEDV HIE+G++PFPYR S
Subjt:  MPSMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLEDVNHIENGQIPFPYRNS

A0A5A7T3V4 Protein RADIALIS-like 19.4e-2982.05Show/hide
Query:  MPSMSAHG-STQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLEDVNHIENGQIPFPYRNST
        M SM+AHG ST WTA +NKAFEKALA+YDKDTPERWLNVAKAIGGKTEE+VKRHYQLL+EDV HIE+G+IPFPYR  T
Subjt:  MPSMSAHG-STQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLEDVNHIENGQIPFPYRNST

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 11.1e-2366.67Show/hide
Query:  SMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLEDVNHIENGQIPFP-YRNS
        SMS+  S  WTA +NKAFE+ALA YD+DTP RW NVAK +GGKT E+VKRHY+LL++D+N IENG +PFP YR S
Subjt:  SMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLEDVNHIENGQIPFP-YRNS

Q1A173 Protein RADIALIS-like 62.6e-2056.1Show/hide
Query:  MPSMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLEDVNHIENGQIPFP-YRNSTRSSR
        M S S    + WT  +NK FE+ALA+YDKDTP+RW NVAKA+GGKT E+VKRHY +L+ED+ +IE G++P P Y+    +SR
Subjt:  MPSMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLEDVNHIENGQIPFP-YRNSTRSSR

Q58FS3 Transcription factor RADIALIS6.9e-2158.11Show/hide
Query:  SAHGSTQ-WTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLEDVNHIENGQIPFPYRNST
        S  GS + W+A ENKAFE+ALA+YDKDTP+RW NVA+A+ G+T E+VK+HY++L+ED+ +IE+G++PFP   +T
Subjt:  SAHGSTQ-WTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLEDVNHIENGQIPFPYRNST

Q6NNN0 Protein RADIALIS-like 35.9e-2058.44Show/hide
Query:  MPSMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLEDVNHIENGQIPFP-YRNS
        M S S   S  WT  ENK FE+ALA YD+DTP+RW NVA+A+GGK+ E+V+RHY+LL+ DVN IE+G+ P P YR++
Subjt:  MPSMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLEDVNHIENGQIPFP-YRNS

Q9SIJ5 Protein RADIALIS-like 21.3e-2259.49Show/hide
Query:  SMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLEDVNHIENGQIPFP-YRNSTRSS
        SMS++GS  WT  +NKAFE+ALA+YD+DTP+RW NVA+A+GGKT E+ KR Y LL+ D+  IENG +PFP Y+ +T +S
Subjt:  SMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLEDVNHIENGQIPFP-YRNSTRSS

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 52.1e-2056.94Show/hide
Query:  MPSMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLEDVNHIENGQIPFP
        M S S   S+ WT+ +NK FE+ALA+YDKDTP+RW NVAKA+G K+ E+VKRHY +L+ED+ +IE   +P P
Subjt:  MPSMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLEDVNHIENGQIPFP

AT1G75250.1 RAD-like 61.9e-2156.1Show/hide
Query:  MPSMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLEDVNHIENGQIPFP-YRNSTRSSR
        M S S    + WT  +NK FE+ALA+YDKDTP+RW NVAKA+GGKT E+VKRHY +L+ED+ +IE G++P P Y+    +SR
Subjt:  MPSMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLEDVNHIENGQIPFP-YRNSTRSSR

AT1G75250.2 RAD-like 61.9e-2156.1Show/hide
Query:  MPSMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLEDVNHIENGQIPFP-YRNSTRSSR
        M S S    + WT  +NK FE+ALA+YDKDTP+RW NVAKA+GGKT E+VKRHY +L+ED+ +IE G++P P Y+    +SR
Subjt:  MPSMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLEDVNHIENGQIPFP-YRNSTRSSR

AT2G21650.1 Homeodomain-like superfamily protein9.0e-2459.49Show/hide
Query:  SMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLEDVNHIENGQIPFP-YRNSTRSS
        SMS++GS  WT  +NKAFE+ALA+YD+DTP+RW NVA+A+GGKT E+ KR Y LL+ D+  IENG +PFP Y+ +T +S
Subjt:  SMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLEDVNHIENGQIPFP-YRNSTRSS

AT4G39250.1 RAD-like 18.1e-2566.67Show/hide
Query:  SMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLEDVNHIENGQIPFP-YRNS
        SMS+  S  WTA +NKAFE+ALA YD+DTP RW NVAK +GGKT E+VKRHY+LL++D+N IENG +PFP YR S
Subjt:  SMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLEDVNHIENGQIPFP-YRNS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTTCAATGTCTGCTCATGGGTCAACTCAATGGACTGCAATTGAAAACAAAGCCTTTGAGAAAGCTTTGGCAATTTATGACAAAGACACACCTGAGAGATGGCTCAA
TGTTGCAAAGGCCATTGGTGGAAAAACTGAAGAGGATGTCAAGAGGCATTATCAACTTCTTCTTGAGGATGTTAACCATATTGAGAATGGTCAAATTCCTTTTCCCTATC
GAAACTCTACGAGGTCGAGTCGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCTTCAATGTCTGCTCATGGGTCAACTCAATGGACTGCAATTGAAAACAAAGCCTTTGAGAAAGCTTTGGCAATTTATGACAAAGACACACCTGAGAGATGGCTCAA
TGTTGCAAAGGCCATTGGTGGAAAAACTGAAGAGGATGTCAAGAGGCATTATCAACTTCTTCTTGAGGATGTTAACCATATTGAGAATGGTCAAATTCCTTTTCCCTATC
GAAACTCTACGAGGTCGAGTCGCTGA
Protein sequenceShow/hide protein sequence
MPSMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLEDVNHIENGQIPFPYRNSTRSSR