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IVF0023051 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0023051
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr03:2876134..2876693
RNA-Seq ExpressionIVF0023051
SyntenyIVF0023051
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033551.1 retrotransposon protein [Cucumis melo var. makuwa]4.62e-6163.92Show/hide
Query:  MLKKTFQAIVEMRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDME
        +LKKTFQAI EMRGP GSGF WND +KCIITERDVFDHWV THP AKG LNKPFPHYD L                                 +D IDME
Subjt:  MLKKTFQAIVEMRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDME

Query:  FPAMCSPRMNMSPEDMIGGRSSRSSDGRTGSSEQKRKRSMQQFETFDLICECIEAAID
        FPAMCSPRMNMSPE+M+GGRS RS+DGR GS+ QKRK SMQQFET+DLI EC+EAA D
Subjt:  FPAMCSPRMNMSPEDMIGGRSSRSSDGRTGSSEQKRKRSMQQFETFDLICECIEAAID

KAA0048148.1 retrotransposon protein [Cucumis melo var. makuwa]7.55e-5375.86Show/hide
Query:  HPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNMSPEDMIGGRSSRSSDGRTGSSEQKRKRSMQQ
        HP AK  LNKPF HYD LSYVF K +ATGAH+ETFADI SN+S   +S   +DGIDMEFP MCSPRMNMSP+DM+GGRS RSSDGRTGSSEQKRK SMQQ
Subjt:  HPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNMSPEDMIGGRSSRSSDGRTGSSEQKRKRSMQQ

Query:  FETFDLICECIEAAID
        FET+DLI EC+EAA D
Subjt:  FETFDLICECIEAAID

KAA0055070.1 retrotransposon protein [Cucumis melo var. makuwa]3.33e-106100Show/hide
Query:  MLKKTFQAIVEMRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDME
        MLKKTFQAIVEMRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDME
Subjt:  MLKKTFQAIVEMRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDME

Query:  FPAMCSPRMNMSPEDMIGGRSSRSSDGRTGSSEQKRKRSMQQFETFDLICE
        FPAMCSPRMNMSPEDMIGGRSSRSSDGRTGSSEQKRKRSMQQFETFDLICE
Subjt:  FPAMCSPRMNMSPEDMIGGRSSRSSDGRTGSSEQKRKRSMQQFETFDLICE

KAA0066443.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]5.38e-5467.14Show/hide
Query:  GPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNMSP
        G     F  ND +K II ERD+FDHWVRTHP AK  +N PFPHY+ LSYVF K RATG  ++TFADI SNV  DN+S   EDGIDMEF AM S RMN+SP
Subjt:  GPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNMSP

Query:  EDMIGGRSSRSSDGRTGSSEQKRKRSMQQFETFDLICECI
        E M+G RS + SDGRTGSS QKRKRSMQQFET+DLI EC+
Subjt:  EDMIGGRSSRSSDGRTGSSEQKRKRSMQQFETFDLICECI

TYK29878.1 retrotransposon protein [Cucumis melo var. makuwa]3.05e-4956.33Show/hide
Query:  MLKKTFQAIVEMRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDME
        +LK+T  AIVE++GP  SGF W+  +KCII  +DVFD W RTH   KG LNKPFPHYD LSYVF K R TGA  E F DI SNV  +++   AEDG+DME
Subjt:  MLKKTFQAIVEMRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDME

Query:  FPAMCSPRMNMSPEDMIGGRSSRSSDGRTGSSEQKRKRSMQQFETFDLICECIEAAID
        FP MCS RMN+S ED +G R S S+  R GSS  KRKR   QFET D+  + +  + D
Subjt:  FPAMCSPRMNMSPEDMIGGRSSRSSDGRTGSSEQKRKRSMQQFETFDLICECIEAAID

TrEMBL top hitse value%identityAlignment
A0A5A7TYU4 Retrotransposon protein1.6e-4075.86Show/hide
Query:  HPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNMSPEDMIGGRSSRSSDGRTGSSEQKRKRSMQQ
        HP AK  LNKPF HYD LSYVF K +ATGAH+ETFADI SN+S   +S   +DGIDMEFP MCSPRMNMSP+DM+GGRS RSSDGRTGSSEQKRK SMQQ
Subjt:  HPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNMSPEDMIGGRSSRSSDGRTGSSEQKRKRSMQQ

Query:  FETFDLICECIEAAID
        FET+DLI EC+EAA D
Subjt:  FETFDLICECIEAAID

A0A5A7VE95 Putative nuclease HARBI14.5e-4369.4Show/hide
Query:  FDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNMSPEDMIGG
        F  ND +K II ERD+FDHWVRTHP AK  +N PFPHY+ LSYVF K RATG  ++TFADI SNV  DN+S   EDGIDMEF AM S RMN+SPE M+G 
Subjt:  FDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNMSPEDMIGG

Query:  RSSRSSDGRTGSSEQKRKRSMQQFETFDLICECI
        RS + SDGRTGSS QKRKRSMQQFET+DLI EC+
Subjt:  RSSRSSDGRTGSSEQKRKRSMQQFETFDLICECI

A0A5D3B9T0 Retrotransposon protein7.9e-4863.92Show/hide
Query:  MLKKTFQAIVEMRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDME
        +LKKTFQAI EMRGP GSGF WND +KCIITERDVFDHWV THP AKG LNKPFPHYD L                                 +D IDME
Subjt:  MLKKTFQAIVEMRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDME

Query:  FPAMCSPRMNMSPEDMIGGRSSRSSDGRTGSSEQKRKRSMQQFETFDLICECIEAAID
        FPAMCSPRMNMSPE+M+GGRS RS+DGR GS+ QKRK SMQQFET+DLI EC+EAA D
Subjt:  FPAMCSPRMNMSPEDMIGGRSSRSSDGRTGSSEQKRKRSMQQFETFDLICECIEAAID

A0A5D3DLC6 Retrotransposon protein8.4e-82100Show/hide
Query:  MLKKTFQAIVEMRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDME
        MLKKTFQAIVEMRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDME
Subjt:  MLKKTFQAIVEMRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDME

Query:  FPAMCSPRMNMSPEDMIGGRSSRSSDGRTGSSEQKRKRSMQQFETFDLICE
        FPAMCSPRMNMSPEDMIGGRSSRSSDGRTGSSEQKRKRSMQQFETFDLICE
Subjt:  FPAMCSPRMNMSPEDMIGGRSSRSSDGRTGSSEQKRKRSMQQFETFDLICE

A0A5D3E267 Retrotransposon protein1.8e-3956.33Show/hide
Query:  MLKKTFQAIVEMRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDME
        +LK+T  AIVE++GP  SGF W+  +KCII  +DVFD W RTH   KG LNKPFPHYD LSYVF K R TGA  E F DI SNV  +++   AEDG+DME
Subjt:  MLKKTFQAIVEMRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDME

Query:  FPAMCSPRMNMSPEDMIGGRSSRSSDGRTGSSEQKRKRSMQQFETFDLICECIEAAID
        FP MCS RMN+S ED +G R S S+  R GSS  KRKR   QFET D+  + +  + D
Subjt:  FPAMCSPRMNMSPEDMIGGRSSRSSDGRTGSSEQKRKRSMQQFETFDLICECIEAAID

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G24960.2 unknown protein4.8e-0528.07Show/hide
Query:  SGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAHS
        +GF W+     +I + D+++ +++ HP A+ +  K  P Y  L ++FGK  + G ++
Subjt:  SGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAHS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGAAAAAGACGTTTCAGGCCATTGTGGAGATGAGGGGCCCAGTAGGTAGTGGCTTCGACTGGAACGATGTCATCAAGTGCATCATCACCGAGAGGGACGTGTTCGA
TCATTGGGTCCGAACGCACCCTACAGCAAAAGGATTCCTGAACAAGCCATTCCCGCATTACGATACATTGTCGTACGTGTTCGGGAAATATCGAGCTACTGGGGCCCATT
CGGAGACCTTTGCAGACATTGTTTCGAACGTGTCAGTCGACAACAATAGTGCCCTCGCAGAAGATGGCATCGACATGGAGTTTCCTGCTATGTGTAGCCCGAGGATGAAT
ATGTCCCCTGAGGACATGATAGGCGGTAGATCAAGTCGATCGAGTGATGGTAGGACGGGCTCTAGTGAACAGAAAAGGAAGCGCTCCATGCAGCAGTTTGAGACGTTTGA
CCTGATTTGCGAATGTATAGAGGCTGCAATTGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGAAAAAGACGTTTCAGGCCATTGTGGAGATGAGGGGCCCAGTAGGTAGTGGCTTCGACTGGAACGATGTCATCAAGTGCATCATCACCGAGAGGGACGTGTTCGA
TCATTGGGTCCGAACGCACCCTACAGCAAAAGGATTCCTGAACAAGCCATTCCCGCATTACGATACATTGTCGTACGTGTTCGGGAAATATCGAGCTACTGGGGCCCATT
CGGAGACCTTTGCAGACATTGTTTCGAACGTGTCAGTCGACAACAATAGTGCCCTCGCAGAAGATGGCATCGACATGGAGTTTCCTGCTATGTGTAGCCCGAGGATGAAT
ATGTCCCCTGAGGACATGATAGGCGGTAGATCAAGTCGATCGAGTGATGGTAGGACGGGCTCTAGTGAACAGAAAAGGAAGCGCTCCATGCAGCAGTTTGAGACGTTTGA
CCTGATTTGCGAATGTATAGAGGCTGCAATTGATTAG
Protein sequenceShow/hide protein sequence
MLKKTFQAIVEMRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMN
MSPEDMIGGRSSRSSDGRTGSSEQKRKRSMQQFETFDLICECIEAAID