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IVF0023072 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0023072
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 17.6
Genome locationchr05:6967653..6967811
RNA-Seq ExpressionIVF0023072
SyntenyIVF0023072
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032019.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]6.74e-31100Show/hide
Query:  MALVNTASNTWTMMFDGATNEIGHGVRAILMSPDGKWYLSPRTRDDAEQPTS
        MALVNTASNTWTMMFDGATNEIGHGVRAILMSPDGKWYLSPRTRDDAEQPTS
Subjt:  MALVNTASNTWTMMFDGATNEIGHGVRAILMSPDGKWYLSPRTRDDAEQPTS
KAA0046609.1 hypothetical protein E6C27_scaffold114G001550 [Cucumis melo var. makuwa]1.84e-1694.74Show/hide
Query:  MALVNTASNTWTMMFDGATNEIGHGVRAILMSPDGKWY
        MALVNT+SNTWTMMFDGATNEIGHGV AILMSPDGKWY
Subjt:  MALVNTASNTWTMMFDGATNEIGHGVRAILMSPDGKWY
KAA0049671.1 uncharacterized protein E6C27_scaffold76G00060 [Cucumis melo var. makuwa]7.77e-1584.21Show/hide
Query:  MALVNTASNTWTMMFDGATNEIGHGVRAILMSPDGKWY
        MA++NT+ NTWTMMFDGATNEIGHGV  ILMSPDGKWY
Subjt:  MALVNTASNTWTMMFDGATNEIGHGVRAILMSPDGKWY
TYK00092.1 protein NYNRIN-like [Cucumis melo var. makuwa]2.08e-1797.37Show/hide
Query:  MALVNTASNTWTMMFDGATNEIGHGVRAILMSPDGKWY
        MALVNT+SNTWTMMFDGATNEIGHGVRAILMSPDGKWY
Subjt:  MALVNTASNTWTMMFDGATNEIGHGVRAILMSPDGKWY
TYK05800.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]1.80e-1489.47Show/hide
Query:  MALVNTASNTWTMMFDGATNEIGHGVRAILMSPDGKWY
        MALVNT+SNTWTM FDGATNEIGHGV AILMS DGKWY
Subjt:  MALVNTASNTWTMMFDGATNEIGHGVRAILMSPDGKWY
TrEMBL top hitse value%identityAlignment
A0A5A7SUT0 Reverse transcriptase7.4e-1191.89Show/hide
Query:  MALVNTASNTWTMMFDGATNEIGHGVRAILMSPDGKW
        MALVNT+SNTWTMMFDGATNEIGH V AILMSPDGKW
Subjt:  MALVNTASNTWTMMFDGATNEIGHGVRAILMSPDGKW
A0A5A7TZF3 Ribonuclease H1.8e-1294.74Show/hide
Query:  MALVNTASNTWTMMFDGATNEIGHGVRAILMSPDGKWY
        MALVNT+SNTWTMMFDGATNEIGHGV AILMSPDGKWY
Subjt:  MALVNTASNTWTMMFDGATNEIGHGVRAILMSPDGKWY
A0A5A7U7X5 Ribonuclease H4.3e-1184.21Show/hide
Query:  MALVNTASNTWTMMFDGATNEIGHGVRAILMSPDGKWY
        MA++NT+ NTWTMMFDGATNEIGHGV  ILMSPDGKWY
Subjt:  MALVNTASNTWTMMFDGATNEIGHGVRAILMSPDGKWY
A0A5D3BMZ2 Protein NYNRIN-like2.7e-1397.37Show/hide
Query:  MALVNTASNTWTMMFDGATNEIGHGVRAILMSPDGKWY
        MALVNT+SNTWTMMFDGATNEIGHGVRAILMSPDGKWY
Subjt:  MALVNTASNTWTMMFDGATNEIGHGVRAILMSPDGKWY
A0A5D3CZQ2 Retrovirus-related Pol polyprotein from transposon 17.65.5e-22100Show/hide
Query:  MALVNTASNTWTMMFDGATNEIGHGVRAILMSPDGKWYLSPRTRDDAEQPTS
        MALVNTASNTWTMMFDGATNEIGHGVRAILMSPDGKWYLSPRTRDDAEQPTS
Subjt:  MALVNTASNTWTMMFDGATNEIGHGVRAILMSPDGKWYLSPRTRDDAEQPTS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATTAGTAAATACCGCATCGAATACATGGACAATGATGTTTGATGGAGCCACGAACGAAATAGGGCACGGTGTGAGAGCAATTTTGATGTCCCCTGATGGAAAGTG
GTACCTGTCGCCACGTACCCGAGACGATGCGGAGCAGCCGACGTCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCATTAGTAAATACCGCATCGAATACATGGACAATGATGTTTGATGGAGCCACGAACGAAATAGGGCACGGTGTGAGAGCAATTTTGATGTCCCCTGATGGAAAGTG
GTACCTGTCGCCACGTACCCGAGACGATGCGGAGCAGCCGACGTCCTAA
Protein sequenceShow/hide protein sequence
MALVNTASNTWTMMFDGATNEIGHGVRAILMSPDGKWYLSPRTRDDAEQPTS