CuGenDBv2

Gene ID	IVF0023091
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	ATP synthase subunit c, chloroplastic
Genome location	tig00007088:889979..890885
RNA-Seq Expression	IVF0023091
Synteny	IVF0023091
Gene Ontology terms	GO:0015986 - ATP synthesis coupled proton transport (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0031966 - mitochondrial membrane (cellular component) GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) (cellular component) GO:0008289 - lipid binding (molecular function) GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism (molecular function)
InterPro domains	IPR000454 - ATP synthase, F0 complex, subunit C IPR002379 - V-ATPase proteolipid subunit C-like domain IPR035921 - F/V-ATP synthase subunit C superfamily IPR038662 - F1F0 ATP synthase subunit C superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

AHM88892.1 ATP synthase CF0 subunit III, partial [Lagenaria siceraria]

9.77e-24

98.08

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Query:  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
        MNPLISAASVIAAGLAVGLASIGPG+GQGTAAGQAVEGIARQPEAEGKIRGT
Subjt:  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT

ARV78259.1 ATP synthase CF0 C subunit [Aneura pinguis]

9.78e-24

100

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Query:  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
        MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
Subjt:  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT

DAD43601.1 TPA_asm: hypothetical protein HUJ06_001831 [Nelumbo nucifera]

6.84e-24

98.08

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Query:  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
        MNPLISAASVIAAGLAVGLASIGPG+GQGTAAGQAVEGIARQPEAEGKIRGT
Subjt:  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT

KAG6540592.1 hypothetical protein Mapa_018107 [Marchantia paleacea]

6.03e-24

100

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Query:  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
        MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
Subjt:  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT

YP_009682225.1 ATP synthase CF0 subunit III [Fissidens nobilis]

9.78e-24

100

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Query:  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
        MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
Subjt:  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT

TrEMBL top hits

e value

%identity

Alignment

A0A0U2SNX2 ATP synthase subunit c, chloroplastic

2.0e-16

100

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Query:  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
        MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
Subjt:  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT

A0A0U2UJ76 ATP synthase subunit c, chloroplastic

2.0e-16

100

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Query:  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
        MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
Subjt:  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT

A0A218KG23 ATP synthase subunit c, chloroplastic

2.0e-16

100

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Query:  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
        MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
Subjt:  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT

A0A482CGV6 ATP synthase F0 sector subunit C

2.0e-16

100

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Query:  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
        MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
Subjt:  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT

U6A3L6 ATP synthase F0 sector subunit C

2.0e-16

100

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Query:  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
        MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
Subjt:  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT

SwissProt top hits

e value

%identity

Alignment

B0Z4N0 ATP synthase subunit c, chloroplastic

5.4e-19

100

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Query:  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
        MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
Subjt:  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT

B0Z4W4 ATP synthase subunit c, chloroplastic

5.4e-19

100

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Query:  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
        MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
Subjt:  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT

P62480 ATP synthase subunit c, chloroplastic

5.4e-19

100

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Query:  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
        MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
Subjt:  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT

P62481 ATP synthase subunit c, chloroplastic

5.4e-19

100

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Query:  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
        MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
Subjt:  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT

Q6WQW2 ATP synthase subunit c, chloroplastic

5.4e-19

100

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Query:  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
        MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
Subjt:  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT

Arabidopsis top hits

e value

%identity

Alignment

ATCG00140.1 ATP synthase subunit C family protein

6.6e-20

96.15

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Query:  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
        MNPL+SAASVIAAGLAVGLASIGPG+GQGTAAGQAVEGIARQPEAEGKIRGT
Subjt:  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT

Sequences

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CDS sequence

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ATGAATCCACTGATTTCTGCCGCTTCCGTTATTGCTGCTGGGTTGGCCGTCGGGCTTGCTTCTATTGGACCTGGGATTGGTCAAGGTACTGCTGCGGGCCAAGCTGTAGA
AGGGATCGCGAGACAACCCGAGGCGGAGGGAAAAATCCGAGGTACTTGA

mRNA sequence

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TGGCCTGCAGTAAAGGAGTTGAGAGCTCTCTTTCTCCTGTTTTCTTTCCTATATTATCTAACCGAACTGAACTAATGTGAAATAACAAAATCGAACTCAAAATAGAATTA
CAAATTCAGAGATCCGCCCTACTACTGTGAATTTAGATAGGGCTTACAATGGAAGTCCTTCTGTTTCGGCTGTAATGTAATTTTGAATTCAATATTGAATGAATAGAGAG
ATTAAATCAAGAAAAACAATGAAGAATGAAAAGAATGCTTTAAAAGAAATGGAAGAACAAAAGTCGTATGGATTCACAAAAACTACGTGGATGGATAGGAACTAAAAAAG
AGAGATTGAAGTAGTTTGGACGATGAAATAATATTATTACTTCAATTCGTAATTTTTAGTTGGATAAATCTTAGTGATGGAATAATAAGTTATAATTCATTGGTTGATTG
TATCATTAACCATTTCTTTCTTTTGGTGTGAGGAACTTATCATGAATCCACTGATTTCTGCCGCTTCCGTTATTGCTGCTGGGTTGGCCGTCGGGCTTGCTTCTATTGGA
CCTGGGATTGGTCAAGGTACTGCTGCGGGCCAAGCTGTAGAAGGGATCGCGAGACAACCCGAGGCGGAGGGAAAAATCCGAGGTACTTGATTTCTTAGTCTGGCTTTTAT
GGAAGCTTTAACAATTTATGGACTGGTTGTAGCATTAGCACTTTGATTTGCGAATCCTTTTGTTTAATCCTAAAAAAATGACGTATTTTGTTTCGTATTTGATTTACTTG
GACTTGCTGCTCTTGCTTTTTCGAATTATATGAAGCTTTCACTCCTACAATTACTTATTCGTTGGGACAATAACCTATGGGAAGGATTGATTTGAGGATGAGGCATTAGC
ATACTGACTCGCCTTCTTCCTTCTTAG

Protein sequence

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MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT

IVF0023091 (gene) of Melon (IVF77) v1 genome