; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0023097 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0023097
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Genome locationchr01:25295392..25302929
RNA-Seq ExpressionIVF0023097
SyntenyIVF0023097
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032016.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa]7.47e-16169.11Show/hide
Query:  MSDILAKKHESLATDKEIMDSLKGMFGQPEWFLRHEPIKYIYTKHMKEGTSVREHVLDMMMHFNIAEVNGGAIDEANQVSFILKSLPKSFIPFQTNASLN
        MSD+LAKKHESLA  KEIMDSLKGMFGQPEW LRHE IKYIYTK MKEGTSVREHVLD+MMHF+IAEVNGGAIDEANQ+SFIL+SLPKSFIPFQTNASLN
Subjt:  MSDILAKKHESLATDKEIMDSLKGMFGQPEWFLRHEPIKYIYTKHMKEGTSVREHVLDMMMHFNIAEVNGGAIDEANQVSFILKSLPKSFIPFQTNASLN

Query:  KIEFNLTIHLNELQRFQNLTKGKGKEVEANVATTKGKFKRGSSSKSKIGPLKSNRKIEKKGKGKTPKQNKGKKTTEK-----------------------
        KIEFNLTI LNELQRFQNLTKGKGKEVEANV TTKGKFKRGSSS SK GP K NRKIEKKGKGKTPKQ KGKKTTEK                       
Subjt:  KIEFNLTIHLNELQRFQNLTKGKGKEVEANVATTKGKFKRGSSSKSKIGPLKSNRKIEKKGKGKTPKQNKGKKTTEK-----------------------

Query:  ----------------------------------------------------------DRPSSSTKVVDKTRNIGQTHPSQELGELRRSRRVVRQPDRYL
                                                                  DRPSSSTKVVDK RNIGQTHPSQELGE RRS RVVRQPDRYL
Subjt:  ----------------------------------------------------------DRPSSSTKVVDKTRNIGQTHPSQELGELRRSRRVVRQPDRYL

Query:  GLSEAQIIIPDNGIEDPLTFKEAMNDVDSEQWIKAMDLEMESMYSNYVWILVDQPNDIRPIGCKWIYKRKQDQVGKVQTFKA
        GLSEAQIIIPD+GIEDPLT+K+AMNDVD +QWIKAMD EMESMYSN VW LVDQP+++RPIGCKW+YKRK++Q  KVQTF A
Subjt:  GLSEAQIIIPDNGIEDPLTFKEAMNDVDSEQWIKAMDLEMESMYSNYVWILVDQPNDIRPIGCKWIYKRKQDQVGKVQTFKA

KAA0055183.1 gag/pol protein [Cucumis melo var. makuwa]1.01e-241100Show/hide
Query:  RFVLIEECPQSAVLNANRANRKAYDRWIKVNEKARVYILANMSDILAKKHESLATDKEIMDSLKGMFGQPEWFLRHEPIKYIYTKHMKEGTSVREHVLDM
        RFVLIEECPQSAVLNANRANRKAYDRWIKVNEKARVYILANMSDILAKKHESLATDKEIMDSLKGMFGQPEWFLRHEPIKYIYTKHMKEGTSVREHVLDM
Subjt:  RFVLIEECPQSAVLNANRANRKAYDRWIKVNEKARVYILANMSDILAKKHESLATDKEIMDSLKGMFGQPEWFLRHEPIKYIYTKHMKEGTSVREHVLDM

Query:  MMHFNIAEVNGGAIDEANQVSFILKSLPKSFIPFQTNASLNKIEFNLTIHLNELQRFQNLTKGKGKEVEANVATTKGKFKRGSSSKSKIGPLKSNRKIEK
        MMHFNIAEVNGGAIDEANQVSFILKSLPKSFIPFQTNASLNKIEFNLTIHLNELQRFQNLTKGKGKEVEANVATTKGKFKRGSSSKSKIGPLKSNRKIEK
Subjt:  MMHFNIAEVNGGAIDEANQVSFILKSLPKSFIPFQTNASLNKIEFNLTIHLNELQRFQNLTKGKGKEVEANVATTKGKFKRGSSSKSKIGPLKSNRKIEK

Query:  KGKGKTPKQNKGKKTTEKDRPSSSTKVVDKTRNIGQTHPSQELGELRRSRRVVRQPDRYLGLSEAQIIIPDNGIEDPLTFKEAMNDVDSEQWIKAMDLEM
        KGKGKTPKQNKGKKTTEKDRPSSSTKVVDKTRNIGQTHPSQELGELRRSRRVVRQPDRYLGLSEAQIIIPDNGIEDPLTFKEAMNDVDSEQWIKAMDLEM
Subjt:  KGKGKTPKQNKGKKTTEKDRPSSSTKVVDKTRNIGQTHPSQELGELRRSRRVVRQPDRYLGLSEAQIIIPDNGIEDPLTFKEAMNDVDSEQWIKAMDLEM

Query:  ESMYSNYVWILVDQPNDIRPIGCKWIYKRKQDQVGKVQTFKA
        ESMYSNYVWILVDQPNDIRPIGCKWIYKRKQDQVGKVQTFKA
Subjt:  ESMYSNYVWILVDQPNDIRPIGCKWIYKRKQDQVGKVQTFKA

KAA0056341.1 gag/pol protein [Cucumis melo var. makuwa]2.27e-15663.98Show/hide
Query:  RFVLIEECPQSAVLNANRANRKAYDRWIKVNEKARVYILANMSDILAKKHESLATDKEIMDSLKGMFGQPEWFLRHEPIKYIYTKHMKEGTSVREHVLDM
        RF+L EECPQ    N N+A+RKAYDRWIK NEKARVYILA+MSD+LAKKHESLAT KEIMDSLKGMF QPEW+LRHE IKYIYTK MKEGTSVREHVLDM
Subjt:  RFVLIEECPQSAVLNANRANRKAYDRWIKVNEKARVYILANMSDILAKKHESLATDKEIMDSLKGMFGQPEWFLRHEPIKYIYTKHMKEGTSVREHVLDM

Query:  MMHFNIAEVNGGAIDEANQVSFILKSLPKSFIPFQTNASLNKIEFNLTIHLNELQRFQNLTKGKGKEVEANVATTKGKFKRGSSSKSKIGPLKSNRKIEK
        MMHFNIAEVNGGAIDEANQVSFIL+SLPKSFIPFQ NASLNKIEFNLT  LNELQ FQNLTKGKGKEVEANVATTKGKFKRGSSSKSK  PLK N+KIEK
Subjt:  MMHFNIAEVNGGAIDEANQVSFILKSLPKSFIPFQTNASLNKIEFNLTIHLNELQRFQNLTKGKGKEVEANVATTKGKFKRGSSSKSKIGPLKSNRKIEK

Query:  KGKGKTPKQNKGKKTTEKDRPSS-----------------------------STKVVDKTR-----NIGQTHPSQELGEL-----------------RRS
        K K KTPKQ KGKKTTEK++ +                              S KVV   +      IG+   ++ L +L                 +RS
Subjt:  KGKGKTPKQNKGKKTTEKDRPSS-----------------------------STKVVDKTR-----NIGQTHPSQELGEL-----------------RRS

Query:  --RRVVR--------QPDRYLGL-------------------SEAQIIIPDNGIEDPLTFKEAMNDVDSEQWIKAMDLEMESMYSNYVWILVDQPNDIRP
          R+ +R          D Y  +                   SEAQIIIPD+GIEDPLT+K+AMNDVD +QWIK+MDLEMESMYSN VW LVDQP+++RP
Subjt:  --RRVVR--------QPDRYLGL-------------------SEAQIIIPDNGIEDPLTFKEAMNDVDSEQWIKAMDLEMESMYSNYVWILVDQPNDIRP

Query:  IGCKWIYKRKQDQVGKVQTFKA
        IGCKWIYKRK+DQ GKVQTFKA
Subjt:  IGCKWIYKRKQDQVGKVQTFKA

TYJ96447.1 gag/pol protein [Cucumis melo var. makuwa]6.08e-14955.11Show/hide
Query:  RFVLIEECPQSAVLNANRANRKAYDRWIKVNEKARVYILANMSDILAKKHESLATDKEIMDSLKGMFGQPEWFLRHEPIKYIYTKHMKEGTSVREHVLDM
        RFVL EECPQ+   NANR +R+AYDRWIK NEKARVYIL++MSD+LAKKHESLAT KEIMDSLKGMFGQP+W LRH+ IKYIYTK MKEGTS+REHVL M
Subjt:  RFVLIEECPQSAVLNANRANRKAYDRWIKVNEKARVYILANMSDILAKKHESLATDKEIMDSLKGMFGQPEWFLRHEPIKYIYTKHMKEGTSVREHVLDM

Query:  MMHFNIAEVNGGAIDEANQVSFILKSLPKSFIPFQTNASLNKIEFNLTIHLNELQRFQNLTKGKGKEVEANVATTKGKFKRGSSSKSKIGPLKSNRKIEK
        M+HFNIAEVNGGAIDEANQVSFIL+SLPKSFIPF+TN SLNKI+FNLT  LNELQRFQNLT GK KEVEAN+ATTKGKF RGSSSKSK GP K NRKIEK
Subjt:  MMHFNIAEVNGGAIDEANQVSFILKSLPKSFIPFQTNASLNKIEFNLTIHLNELQRFQNLTKGKGKEVEANVATTKGKFKRGSSSKSKIGPLKSNRKIEK

Query:  KGKGKTPKQNKGKKTTEKDR--------------PSSST--KVVDKTRNIGQTH----------------------------------------------
        KGKGKTPKQNKGKKT  K +              P   T  K   + ++ G T+                                              
Subjt:  KGKGKTPKQNKGKKTTEKDR--------------PSSST--KVVDKTRNIGQTH----------------------------------------------

Query:  -----------------------------------------PSQELGELRRSRRVV----------RQPDRYLGL---------------SEAQIIIPDN
                                                 P Q     RR+R ++          + PD + G                SEAQI+IPDN
Subjt:  -----------------------------------------PSQELGELRRSRRVV----------RQPDRYLGL---------------SEAQIIIPDN

Query:  GIEDPLTFKEAMNDVDSEQWIKAMDLEMESMYSNYVWILVDQPNDIRPIGCKWIYKRKQDQVGKVQTFKA
        GIEDPLT+K+ MND+D +QW+KA+DLEMESMYSN VW LVDQPN+++PIGCKWIYKRK+DQ GKVQTFKA
Subjt:  GIEDPLTFKEAMNDVDSEQWIKAMDLEMESMYSNYVWILVDQPNDIRPIGCKWIYKRKQDQVGKVQTFKA

TYK03174.1 gag/pol protein [Cucumis melo var. makuwa]1.09e-15663.98Show/hide
Query:  RFVLIEECPQSAVLNANRANRKAYDRWIKVNEKARVYILANMSDILAKKHESLATDKEIMDSLKGMFGQPEWFLRHEPIKYIYTKHMKEGTSVREHVLDM
        RF+L EECPQ    N N+A+RKAYDRWIK NEKARVYILA+MSD+LAKKHESLAT KEIMDSLKGMF QPEW+LRHE IKYIYTK MKEGTSVREHVLDM
Subjt:  RFVLIEECPQSAVLNANRANRKAYDRWIKVNEKARVYILANMSDILAKKHESLATDKEIMDSLKGMFGQPEWFLRHEPIKYIYTKHMKEGTSVREHVLDM

Query:  MMHFNIAEVNGGAIDEANQVSFILKSLPKSFIPFQTNASLNKIEFNLTIHLNELQRFQNLTKGKGKEVEANVATTKGKFKRGSSSKSKIGPLKSNRKIEK
        MMHFNIAEVNGGAIDEANQVSFIL+SLPKSFIPFQ NASLNKIEFNLT  LNELQ FQNLTKGKGKEVEANVATTKGKFKRGSSSKSK  PLK N+KIEK
Subjt:  MMHFNIAEVNGGAIDEANQVSFILKSLPKSFIPFQTNASLNKIEFNLTIHLNELQRFQNLTKGKGKEVEANVATTKGKFKRGSSSKSKIGPLKSNRKIEK

Query:  KGKGKTPKQNKGKKTTEKDRPSS-----------------------------STKVVDKTR-----NIGQTHPSQELGEL-----------------RRS
        K K KTPKQ KGKKTTEK++ +                              S KVV   +      IG+   ++ L +L                 +RS
Subjt:  KGKGKTPKQNKGKKTTEKDRPSS-----------------------------STKVVDKTR-----NIGQTHPSQELGEL-----------------RRS

Query:  --RRVVR--------QPDRYLGL-------------------SEAQIIIPDNGIEDPLTFKEAMNDVDSEQWIKAMDLEMESMYSNYVWILVDQPNDIRP
          R+ +R          D Y  +                   SEAQIIIPD+GIEDPLT+K+AMNDVD +QWIK+MDLEMESMYSN VW LVDQP+++RP
Subjt:  --RRVVR--------QPDRYLGL-------------------SEAQIIIPDNGIEDPLTFKEAMNDVDSEQWIKAMDLEMESMYSNYVWILVDQPNDIRP

Query:  IGCKWIYKRKQDQVGKVQTFKA
        IGCKWIYKRK+DQ GKVQTFKA
Subjt:  IGCKWIYKRKQDQVGKVQTFKA

TrEMBL top hitse value%identityAlignment
A0A5A7US12 Gag/pol protein4.5e-12963.98Show/hide
Query:  RFVLIEECPQSAVLNANRANRKAYDRWIKVNEKARVYILANMSDILAKKHESLATDKEIMDSLKGMFGQPEWFLRHEPIKYIYTKHMKEGTSVREHVLDM
        RF+L EECPQ    N N+A+RKAYDRWIK NEKARVYILA+MSD+LAKKHESLAT KEIMDSLKGMF QPEW+LRHE IKYIYTK MKEGTSVREHVLDM
Subjt:  RFVLIEECPQSAVLNANRANRKAYDRWIKVNEKARVYILANMSDILAKKHESLATDKEIMDSLKGMFGQPEWFLRHEPIKYIYTKHMKEGTSVREHVLDM

Query:  MMHFNIAEVNGGAIDEANQVSFILKSLPKSFIPFQTNASLNKIEFNLTIHLNELQRFQNLTKGKGKEVEANVATTKGKFKRGSSSKSKIGPLKSNRKIEK
        MMHFNIAEVNGGAIDEANQVSFIL+SLPKSFIPFQ NASLNKIEFNLT  LNELQ FQNLTKGKGKEVEANVATTKGKFKRGSSSKSK  PLK N+KIEK
Subjt:  MMHFNIAEVNGGAIDEANQVSFILKSLPKSFIPFQTNASLNKIEFNLTIHLNELQRFQNLTKGKGKEVEANVATTKGKFKRGSSSKSKIGPLKSNRKIEK

Query:  KGKGKTPKQNKGKKTTEKDRPSS-----------------------------STKVVDKTR-----NIGQTHPSQELGEL-----------------RRS
        K K KTPKQ KGKKTTEK++ +                              S KVV   +      IG+   ++ L +L                 +RS
Subjt:  KGKGKTPKQNKGKKTTEKDRPSS-----------------------------STKVVDKTR-----NIGQTHPSQELGEL-----------------RRS

Query:  --RRVVR--------QPDRYLGL-------------------SEAQIIIPDNGIEDPLTFKEAMNDVDSEQWIKAMDLEMESMYSNYVWILVDQPNDIRP
          R+ +R          D Y  +                   SEAQIIIPD+GIEDPLT+K+AMNDVD +QWIK+MDLEMESMYSN VW LVDQP+++RP
Subjt:  --RRVVR--------QPDRYLGL-------------------SEAQIIIPDNGIEDPLTFKEAMNDVDSEQWIKAMDLEMESMYSNYVWILVDQPNDIRP

Query:  IGCKWIYKRKQDQVGKVQTFKA
        IGCKWIYKRK+DQ GKVQTFKA
Subjt:  IGCKWIYKRKQDQVGKVQTFKA

A0A5D3BBF3 Gag/pol protein9.1e-12255.11Show/hide
Query:  RFVLIEECPQSAVLNANRANRKAYDRWIKVNEKARVYILANMSDILAKKHESLATDKEIMDSLKGMFGQPEWFLRHEPIKYIYTKHMKEGTSVREHVLDM
        RFVL EECPQ+   NANR +R+AYDRWIK NEKARVYIL++MSD+LAKKHESLAT KEIMDSLKGMFGQP+W LRH+ IKYIYTK MKEGTS+REHVL M
Subjt:  RFVLIEECPQSAVLNANRANRKAYDRWIKVNEKARVYILANMSDILAKKHESLATDKEIMDSLKGMFGQPEWFLRHEPIKYIYTKHMKEGTSVREHVLDM

Query:  MMHFNIAEVNGGAIDEANQVSFILKSLPKSFIPFQTNASLNKIEFNLTIHLNELQRFQNLTKGKGKEVEANVATTKGKFKRGSSSKSKIGPLKSNRKIEK
        M+HFNIAEVNGGAIDEANQVSFIL+SLPKSFIPF+TN SLNKI+FNLT  LNELQRFQNLT GK KEVEAN+ATTKGKF RGSSSKSK GP K NRKIEK
Subjt:  MMHFNIAEVNGGAIDEANQVSFILKSLPKSFIPFQTNASLNKIEFNLTIHLNELQRFQNLTKGKGKEVEANVATTKGKFKRGSSSKSKIGPLKSNRKIEK

Query:  KGKGKTPKQNKGKKTTEKDR--------------PSSST--KVVDKTRNIGQTH----------------------------------------------
        KGKGKTPKQNKGKKT  K +              P   T  K   + ++ G T+                                              
Subjt:  KGKGKTPKQNKGKKTTEKDR--------------PSSST--KVVDKTRNIGQTH----------------------------------------------

Query:  -----------------------------------------PSQELGELRRSRRVV----------RQPDRYLGL---------------SEAQIIIPDN
                                                 P Q     RR+R ++          + PD + G                SEAQI+IPDN
Subjt:  -----------------------------------------PSQELGELRRSRRVV----------RQPDRYLGL---------------SEAQIIIPDN

Query:  GIEDPLTFKEAMNDVDSEQWIKAMDLEMESMYSNYVWILVDQPNDIRPIGCKWIYKRKQDQVGKVQTFKA
        GIEDPLT+K+ MND+D +QW+KA+DLEMESMYSN VW LVDQPN+++PIGCKWIYKRK+DQ GKVQTFKA
Subjt:  GIEDPLTFKEAMNDVDSEQWIKAMDLEMESMYSNYVWILVDQPNDIRPIGCKWIYKRKQDQVGKVQTFKA

A0A5D3BVG4 Gag/pol protein4.5e-12963.98Show/hide
Query:  RFVLIEECPQSAVLNANRANRKAYDRWIKVNEKARVYILANMSDILAKKHESLATDKEIMDSLKGMFGQPEWFLRHEPIKYIYTKHMKEGTSVREHVLDM
        RF+L EECPQ    N N+A+RKAYDRWIK NEKARVYILA+MSD+LAKKHESLAT KEIMDSLKGMF QPEW+LRHE IKYIYTK MKEGTSVREHVLDM
Subjt:  RFVLIEECPQSAVLNANRANRKAYDRWIKVNEKARVYILANMSDILAKKHESLATDKEIMDSLKGMFGQPEWFLRHEPIKYIYTKHMKEGTSVREHVLDM

Query:  MMHFNIAEVNGGAIDEANQVSFILKSLPKSFIPFQTNASLNKIEFNLTIHLNELQRFQNLTKGKGKEVEANVATTKGKFKRGSSSKSKIGPLKSNRKIEK
        MMHFNIAEVNGGAIDEANQVSFIL+SLPKSFIPFQ NASLNKIEFNLT  LNELQ FQNLTKGKGKEVEANVATTKGKFKRGSSSKSK  PLK N+KIEK
Subjt:  MMHFNIAEVNGGAIDEANQVSFILKSLPKSFIPFQTNASLNKIEFNLTIHLNELQRFQNLTKGKGKEVEANVATTKGKFKRGSSSKSKIGPLKSNRKIEK

Query:  KGKGKTPKQNKGKKTTEKDRPSS-----------------------------STKVVDKTR-----NIGQTHPSQELGEL-----------------RRS
        K K KTPKQ KGKKTTEK++ +                              S KVV   +      IG+   ++ L +L                 +RS
Subjt:  KGKGKTPKQNKGKKTTEKDRPSS-----------------------------STKVVDKTR-----NIGQTHPSQELGEL-----------------RRS

Query:  --RRVVR--------QPDRYLGL-------------------SEAQIIIPDNGIEDPLTFKEAMNDVDSEQWIKAMDLEMESMYSNYVWILVDQPNDIRP
          R+ +R          D Y  +                   SEAQIIIPD+GIEDPLT+K+AMNDVD +QWIK+MDLEMESMYSN VW LVDQP+++RP
Subjt:  --RRVVR--------QPDRYLGL-------------------SEAQIIIPDNGIEDPLTFKEAMNDVDSEQWIKAMDLEMESMYSNYVWILVDQPNDIRP

Query:  IGCKWIYKRKQDQVGKVQTFKA
        IGCKWIYKRK+DQ GKVQTFKA
Subjt:  IGCKWIYKRKQDQVGKVQTFKA

A0A5D3CYG9 Retrovirus-related pol polyprotein from transposon tnt 1-941.6e-13169.11Show/hide
Query:  MSDILAKKHESLATDKEIMDSLKGMFGQPEWFLRHEPIKYIYTKHMKEGTSVREHVLDMMMHFNIAEVNGGAIDEANQVSFILKSLPKSFIPFQTNASLN
        MSD+LAKKHESLA  KEIMDSLKGMFGQPEW LRHE IKYIYTK MKEGTSVREHVLD+MMHF+IAEVNGGAIDEANQ+SFIL+SLPKSFIPFQTNASLN
Subjt:  MSDILAKKHESLATDKEIMDSLKGMFGQPEWFLRHEPIKYIYTKHMKEGTSVREHVLDMMMHFNIAEVNGGAIDEANQVSFILKSLPKSFIPFQTNASLN

Query:  KIEFNLTIHLNELQRFQNLTKGKGKEVEANVATTKGKFKRGSSSKSKIGPLKSNRKIEKKGKGKTPKQNKGKKTTEK-----------------------
        KIEFNLTI LNELQRFQNLTKGKGKEVEANV TTKGKFKRGSSS SK GP K NRKIEKKGKGKTPKQ KGKKTTEK                       
Subjt:  KIEFNLTIHLNELQRFQNLTKGKGKEVEANVATTKGKFKRGSSSKSKIGPLKSNRKIEKKGKGKTPKQNKGKKTTEK-----------------------

Query:  ----------------------------------------------------------DRPSSSTKVVDKTRNIGQTHPSQELGELRRSRRVVRQPDRYL
                                                                  DRPSSSTKVVDK RNIGQTHPSQELGE RRS RVVRQPDRYL
Subjt:  ----------------------------------------------------------DRPSSSTKVVDKTRNIGQTHPSQELGELRRSRRVVRQPDRYL

Query:  GLSEAQIIIPDNGIEDPLTFKEAMNDVDSEQWIKAMDLEMESMYSNYVWILVDQPNDIRPIGCKWIYKRKQDQVGKVQTFKA
        GLSEAQIIIPD+GIEDPLT+K+AMNDVD +QWIKAMD EMESMYSN VW LVDQP+++RPIGCKW+YKRK++Q  KVQTF A
Subjt:  GLSEAQIIIPDNGIEDPLTFKEAMNDVDSEQWIKAMDLEMESMYSNYVWILVDQPNDIRPIGCKWIYKRKQDQVGKVQTFKA

A0A5D3DQ34 Gag/pol protein6.0e-190100Show/hide
Query:  RFVLIEECPQSAVLNANRANRKAYDRWIKVNEKARVYILANMSDILAKKHESLATDKEIMDSLKGMFGQPEWFLRHEPIKYIYTKHMKEGTSVREHVLDM
        RFVLIEECPQSAVLNANRANRKAYDRWIKVNEKARVYILANMSDILAKKHESLATDKEIMDSLKGMFGQPEWFLRHEPIKYIYTKHMKEGTSVREHVLDM
Subjt:  RFVLIEECPQSAVLNANRANRKAYDRWIKVNEKARVYILANMSDILAKKHESLATDKEIMDSLKGMFGQPEWFLRHEPIKYIYTKHMKEGTSVREHVLDM

Query:  MMHFNIAEVNGGAIDEANQVSFILKSLPKSFIPFQTNASLNKIEFNLTIHLNELQRFQNLTKGKGKEVEANVATTKGKFKRGSSSKSKIGPLKSNRKIEK
        MMHFNIAEVNGGAIDEANQVSFILKSLPKSFIPFQTNASLNKIEFNLTIHLNELQRFQNLTKGKGKEVEANVATTKGKFKRGSSSKSKIGPLKSNRKIEK
Subjt:  MMHFNIAEVNGGAIDEANQVSFILKSLPKSFIPFQTNASLNKIEFNLTIHLNELQRFQNLTKGKGKEVEANVATTKGKFKRGSSSKSKIGPLKSNRKIEK

Query:  KGKGKTPKQNKGKKTTEKDRPSSSTKVVDKTRNIGQTHPSQELGELRRSRRVVRQPDRYLGLSEAQIIIPDNGIEDPLTFKEAMNDVDSEQWIKAMDLEM
        KGKGKTPKQNKGKKTTEKDRPSSSTKVVDKTRNIGQTHPSQELGELRRSRRVVRQPDRYLGLSEAQIIIPDNGIEDPLTFKEAMNDVDSEQWIKAMDLEM
Subjt:  KGKGKTPKQNKGKKTTEKDRPSSSTKVVDKTRNIGQTHPSQELGELRRSRRVVRQPDRYLGLSEAQIIIPDNGIEDPLTFKEAMNDVDSEQWIKAMDLEM

Query:  ESMYSNYVWILVDQPNDIRPIGCKWIYKRKQDQVGKVQTFKA
        ESMYSNYVWILVDQPNDIRPIGCKWIYKRKQDQVGKVQTFKA
Subjt:  ESMYSNYVWILVDQPNDIRPIGCKWIYKRKQDQVGKVQTFKA

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-942.2e-0836.11Show/hide
Query:  HPSQ---ELGELRRSRRVVRQPDRYLGLSEAQIIIPDNGIEDPLTFKEAMNDVDSEQWIKAMDLEMESMYSNYVWILVDQPNDIRPIGCKWIYKRKQDQV
        HP+Q   +   LRRS R   +  RY   S   ++I D+   +P + KE ++  +  Q +KAM  EMES+  N  + LV+ P   RP+ CKW++K K+D  
Subjt:  HPSQ---ELGELRRSRRVVRQPDRYLGLSEAQIIIPDNGIEDPLTFKEAMNDVDSEQWIKAMDLEMESMYSNYVWILVDQPNDIRPIGCKWIYKRKQDQV

Query:  GKVQTFKA
         K+  +KA
Subjt:  GKVQTFKA

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 87.3e-0735.29Show/hide
Query:  EDPLTFKEAMNDVDSEQWIKAMDLEMESMYSNYVWILVDQPNDIRPIGCKWIYKRKQDQVGKVQTFKA
        ++P T+ EA   +    W  AMD E+ +M + + W +   P + +PIGCKW+YK K +  G ++ +KA
Subjt:  EDPLTFKEAMNDVDSEQWIKAMDLEMESMYSNYVWILVDQPNDIRPIGCKWIYKRKQDQVGKVQTFKA

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)9.0e-0537.25Show/hide
Query:  WIKAMDLEMESMYSNYVWILVDQPNDIRPIGCKWIYKRKQDQVGKVQTFKA
        W +AM  E++++  N  WILV  P +   +GCKW++K K    G +   KA
Subjt:  WIKAMDLEMESMYSNYVWILVDQPNDIRPIGCKWIYKRKQDQVGKVQTFKA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCATCAGAGAAGAAATGATGGGCATCGGAGAAGAAATGGGCATCAGAGAAGAAAGGGGCGATTTCCGTTTCGAGAGGAAAAAGGGCAGAGAAGGAAAAGAATTCAA
AGAGGAAGCTCAGAAGTATAAAAGATTTGTCTTAATTGAGGAATGTCCTCAAAGCGCTGTCTTAAATGCAAACCGAGCTAATCGGAAAGCATATGATCGATGGATAAAGG
TAAATGAGAAAGCCCGTGTCTACATTCTTGCTAACATGTCAGATATTTTAGCAAAGAAGCATGAATCCTTAGCCACGGACAAAGAAATTATGGATTCTTTGAAAGGAATG
TTTGGGCAACCAGAGTGGTTCCTAAGACACGAGCCAATCAAATACATTTACACTAAGCATATGAAGGAAGGGACCTCTGTTAGAGAACATGTTCTGGACATGATGATGCA
CTTCAATATTGCTGAAGTAAATGGAGGTGCCATCGATGAGGCTAATCAAGTTAGCTTTATCTTAAAGTCTCTTCCGAAGAGCTTTATACCATTTCAAACGAATGCGTCTC
TGAATAAGATAGAGTTTAACCTGACAATCCATCTGAATGAACTCCAGCGGTTCCAAAATCTTACAAAAGGTAAAGGAAAAGAAGTAGAAGCAAATGTTGCTACTACAAAA
GGAAAATTCAAAAGAGGATCGTCCTCTAAATCCAAAATTGGACCCTTAAAATCTAATAGAAAGATTGAGAAGAAGGGAAAGGGGAAGACTCCCAAGCAGAACAAGGGTAA
GAAGACTACAGAAAAAGATAGACCTAGTTCATCTACTAAAGTAGTAGATAAAACTAGGAATATTGGTCAAACACATCCTTCTCAAGAGTTGGGAGAGCTTCGTCGCAGTA
GAAGGGTTGTACGACAGCCTGATCGCTATTTGGGTTTAAGTGAAGCTCAAATCATCATACCTGATAATGGGATAGAAGATCCATTGACCTTTAAAGAGGCAATGAATGAT
GTAGACTCTGAGCAATGGATCAAAGCCATGGACCTCGAAATGGAATCTATGTATTCCAATTATGTCTGGATTCTAGTAGATCAACCAAATGATATAAGACCTATTGGTTG
TAAATGGATCTACAAGAGAAAACAAGACCAAGTTGGAAAAGTACAGACTTTCAAAGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGCATCAGAGAAGAAATGATGGGCATCGGAGAAGAAATGGGCATCAGAGAAGAAAGGGGCGATTTCCGTTTCGAGAGGAAAAAGGGCAGAGAAGGAAAAGAATTCAA
AGAGGAAGCTCAGAAGTATAAAAGATTTGTCTTAATTGAGGAATGTCCTCAAAGCGCTGTCTTAAATGCAAACCGAGCTAATCGGAAAGCATATGATCGATGGATAAAGG
TAAATGAGAAAGCCCGTGTCTACATTCTTGCTAACATGTCAGATATTTTAGCAAAGAAGCATGAATCCTTAGCCACGGACAAAGAAATTATGGATTCTTTGAAAGGAATG
TTTGGGCAACCAGAGTGGTTCCTAAGACACGAGCCAATCAAATACATTTACACTAAGCATATGAAGGAAGGGACCTCTGTTAGAGAACATGTTCTGGACATGATGATGCA
CTTCAATATTGCTGAAGTAAATGGAGGTGCCATCGATGAGGCTAATCAAGTTAGCTTTATCTTAAAGTCTCTTCCGAAGAGCTTTATACCATTTCAAACGAATGCGTCTC
TGAATAAGATAGAGTTTAACCTGACAATCCATCTGAATGAACTCCAGCGGTTCCAAAATCTTACAAAAGGTAAAGGAAAAGAAGTAGAAGCAAATGTTGCTACTACAAAA
GGAAAATTCAAAAGAGGATCGTCCTCTAAATCCAAAATTGGACCCTTAAAATCTAATAGAAAGATTGAGAAGAAGGGAAAGGGGAAGACTCCCAAGCAGAACAAGGGTAA
GAAGACTACAGAAAAAGATAGACCTAGTTCATCTACTAAAGTAGTAGATAAAACTAGGAATATTGGTCAAACACATCCTTCTCAAGAGTTGGGAGAGCTTCGTCGCAGTA
GAAGGGTTGTACGACAGCCTGATCGCTATTTGGGTTTAAGTGAAGCTCAAATCATCATACCTGATAATGGGATAGAAGATCCATTGACCTTTAAAGAGGCAATGAATGAT
GTAGACTCTGAGCAATGGATCAAAGCCATGGACCTCGAAATGGAATCTATGTATTCCAATTATGTCTGGATTCTAGTAGATCAACCAAATGATATAAGACCTATTGGTTG
TAAATGGATCTACAAGAGAAAACAAGACCAAGTTGGAAAAGTACAGACTTTCAAAGCTTAA
Protein sequenceShow/hide protein sequence
MGIREEMMGIGEEMGIREERGDFRFERKKGREGKEFKEEAQKYKRFVLIEECPQSAVLNANRANRKAYDRWIKVNEKARVYILANMSDILAKKHESLATDKEIMDSLKGM
FGQPEWFLRHEPIKYIYTKHMKEGTSVREHVLDMMMHFNIAEVNGGAIDEANQVSFILKSLPKSFIPFQTNASLNKIEFNLTIHLNELQRFQNLTKGKGKEVEANVATTK
GKFKRGSSSKSKIGPLKSNRKIEKKGKGKTPKQNKGKKTTEKDRPSSSTKVVDKTRNIGQTHPSQELGELRRSRRVVRQPDRYLGLSEAQIIIPDNGIEDPLTFKEAMND
VDSEQWIKAMDLEMESMYSNYVWILVDQPNDIRPIGCKWIYKRKQDQVGKVQTFKA