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IVF0023120 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0023120
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr10:26460634..26460882
RNA-Seq ExpressionIVF0023120
SyntenyIVF0023120
Gene Ontology termsGO:0090481 - pyrimidine nucleotide-sugar transmembrane transport (biological process)
GO:0000139 - Golgi membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0015165 - pyrimidine nucleotide-sugar transmembrane transporter activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037133.1 retrotransposon protein [Cucumis melo var. makuwa]1.24e-1785.71Show/hide
Query:  ATIWVSSLWVSVDEKKGRGNEKNGVKVGVFFMRRLSFVRGGILKKERGV
        ATIWVSS WVS  EKKGRG+EKNGVKVGVF MRR  FVRGGILKKERGV
Subjt:  ATIWVSSLWVSVDEKKGRGNEKNGVKVGVFFMRRLSFVRGGILKKERGV

KAA0044825.1 transcription factor bHLH36-like [Cucumis melo var. makuwa]2.70e-1760.27Show/hide
Query:  RGRRNEKRKIKNSPATIW-VSSLWVSVDEKKGRGNEKNGVKVGVFFMRRLSFVRGGILKKERGVCVKKESDGF
        R RR E   +  S  T+  +  + VSV +KKGRG+EKNGVKVGVF M R SFVRGG+LKK+RGV VKKE +GF
Subjt:  RGRRNEKRKIKNSPATIW-VSSLWVSVDEKKGRGNEKNGVKVGVFFMRRLSFVRGGILKKERGVCVKKESDGF

KAA0048509.1 CMP-sialic acid transporter 4 isoform X2 [Cucumis melo var. makuwa]3.73e-1784.78Show/hide
Query:  MNRGRRNEKRKIKNSPATIWVSSLWVSVDEKKGRGNEKNGVKVGVF
        +N GRRNEKRKIKNSP TIWVSS WVSV EKKGRG+EKNGVKV VF
Subjt:  MNRGRRNEKRKIKNSPATIWVSSLWVSVDEKKGRGNEKNGVKVGVF

KAA0054034.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]5.77e-1776Show/hide
Query:  IWVSSLWVSVDEKKGRGNEKNGVKVGVFFMRRLSFVRGGILKKERGVCVK
        +WVSS WVSV +KKGRG+EKNG KVGVF MRR SFVR GILKKE GVC++
Subjt:  IWVSSLWVSVDEKKGRGNEKNGVKVGVFFMRRLSFVRGGILKKERGVCVK

TYJ96889.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.15e-1665.62Show/hide
Query:  IWVSSLWVSVDEKKGRGNEKNGVKVGVFFMRRLSFVRGGILKKERGVCVKKESDG-----FCLF
        +WVSS WVSV +KKGRG+EKNG KVGVF MRR SFVR GILKKE GV   KE        FC+F
Subjt:  IWVSSLWVSVDEKKGRGNEKNGVKVGVFFMRRLSFVRGGILKKERGVCVKKESDG-----FCLF

TrEMBL top hitse value%identityAlignment
A0A5A7T2E4 Retrotransposon protein3.0e-1485.71Show/hide
Query:  ATIWVSSLWVSVDEKKGRGNEKNGVKVGVFFMRRLSFVRGGILKKERGV
        ATIWVSS WVS  EKKGRG+EKNGVKVGVF MRR  FVRGGILKKERGV
Subjt:  ATIWVSSLWVSVDEKKGRGNEKNGVKVGVFFMRRLSFVRGGILKKERGV

A0A5A7TTV0 Transcription factor bHLH36-like2.8e-1260.27Show/hide
Query:  RGRRNEKRKIKNSPATIW-VSSLWVSVDEKKGRGNEKNGVKVGVFFMRRLSFVRGGILKKERGVCVKKESDGF
        R RR E   +  S  T+  +  + VSV +KKGRG+EKNGVKVGVF M R SFVRGG+LKK+RGV VKKE +GF
Subjt:  RGRRNEKRKIKNSPATIW-VSSLWVSVDEKKGRGNEKNGVKVGVFFMRRLSFVRGGILKKERGVCVKKESDGF

A0A5A7U4Z1 CMP-sialic acid transporter 4 isoform X22.1e-1284.78Show/hide
Query:  MNRGRRNEKRKIKNSPATIWVSSLWVSVDEKKGRGNEKNGVKVGVF
        +N GRRNEKRKIKNSP TIWVSS WVSV EKKGRG+EKNGVKV VF
Subjt:  MNRGRRNEKRKIKNSPATIWVSSLWVSVDEKKGRGNEKNGVKVGVF

A0A5A7UFR0 Ty3-gypsy retrotransposon protein7.3e-1376Show/hide
Query:  IWVSSLWVSVDEKKGRGNEKNGVKVGVFFMRRLSFVRGGILKKERGVCVK
        +WVSS WVSV +KKGRG+EKNG KVGVF MRR SFVR GILKKE GVC++
Subjt:  IWVSSLWVSVDEKKGRGNEKNGVKVGVFFMRRLSFVRGGILKKERGVCVK

A0A5D3BCV7 Ty3-gypsy retrotransposon protein1.2e-1265.62Show/hide
Query:  IWVSSLWVSVDEKKGRGNEKNGVKVGVFFMRRLSFVRGGILKKERGVCVKKESDG-----FCLF
        +WVSS WVSV +KKGRG+EKNG KVGVF MRR SFVR GILKKE GV   KE        FC+F
Subjt:  IWVSSLWVSVDEKKGRGNEKNGVKVGVFFMRRLSFVRGGILKKERGVCVKKESDG-----FCLF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAGAGGGAGAAGAAACGAAAAAAGAAAGATCAAGAACTCACCAGCGACGATATGGGTCTCTTCGCTGTGGGTCTCCGTCGACGAGAAGAAAGGACGTGGAAATGA
AAAGAATGGGGTTAAGGTTGGGGTTTTTTTCATGCGTCGTTTGTCGTTCGTGAGGGGAGGGATTTTGAAGAAGGAAAGAGGAGTGTGTGTGAAGAAGGAAAGTGATGGAT
TTTGCCTTTTCTTTATTTTTTTATTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAACAGAGGGAGAAGAAACGAAAAAAGAAAGATCAAGAACTCACCAGCGACGATATGGGTCTCTTCGCTGTGGGTCTCCGTCGACGAGAAGAAAGGACGTGGAAATGA
AAAGAATGGGGTTAAGGTTGGGGTTTTTTTCATGCGTCGTTTGTCGTTCGTGAGGGGAGGGATTTTGAAGAAGGAAAGAGGAGTGTGTGTGAAGAAGGAAAGTGATGGAT
TTTGCCTTTTCTTTATTTTTTTATTTTAA
Protein sequenceShow/hide protein sequence
MNRGRRNEKRKIKNSPATIWVSSLWVSVDEKKGRGNEKNGVKVGVFFMRRLSFVRGGILKKERGVCVKKESDGFCLFFIFLF