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IVF0023133 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0023133
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon gag protein
Genome locationchr08:29516945..29517562
RNA-Seq ExpressionIVF0023133
SyntenyIVF0023133
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040574.1 hypothetical protein E6C27_scaffold262G001440 [Cucumis melo var. makuwa]1.61e-5756.48Show/hide
Query:  MLQTRIFPCVAVGRIYIFIFSHVLRSGGSTSSFSHMCCSRECPRLKYVVVEKILVSKYITAEKIVVSNMLWPRRSLSQICCGRKDRRLQYVAAEKIVVSN
        ML+T IFPCVA  RI+ FIFSHVL+   S+S      CSRE  RLKYV VEK                   PRRS SQICC R+  RL+Y+ AE IVVSN
Subjt:  MLQTRIFPCVAVGRIYIFIFSHVLRSGGSTSSFSHMCCSRECPRLKYVVVEKILVSKYITAEKIVVSNMLWPRRSLSQICCGRKDRRLQYVAAEKIVVSN

Query:  MLRSRRSSSPICCGREDRRLKYVAVEKIVV-----------SNMLQSRRSSSQICCSREDRRLKYVAVEAIVVSNMLQSRLSSSQICCSRGYHRLKYVAV
        ML+SR S S IC  RE R  KYVA EKIVV           SNMLQSR SSS IC SRE +RLKYVAVE +VVSNML SR SSSQIC ++  HRLK+VA 
Subjt:  MLRSRRSSSPICCGREDRRLKYVAVEKIVV-----------SNMLQSRRSSSQICCSREDRRLKYVAVEAIVVSNMLQSRLSSSQICCSRGYHRLKYVAV

Query:  EAITVLNMLQSRLSSS
        E   V ++L  R+SSS
Subjt:  EAITVLNMLQSRLSSS

KAA0046208.1 hypothetical protein E6C27_scaffold8039G00010 [Cucumis melo var. makuwa]9.18e-5949.62Show/hide
Query:  MLQTRIFPCVAVGRIYIFIFSHVLRSGGSTSSFSHMCCSRECPRLKYVVVEKILVS---------------------KYITAEKIVV-----SNMLWPRR
        MLQTRIFPCV   RI+IFIFSHVL+  GS+SS S +CCS++   LKY+V EK++VS                     KY+ +EKIV      +  + PR 
Subjt:  MLQTRIFPCVAVGRIYIFIFSHVLRSGGSTSSFSHMCCSRECPRLKYVVVEKILVS---------------------KYITAEKIVV-----SNMLWPRR

Query:  SLSQICCGRKDRRLQYVAAEKIVVSNMLRS----RRSSSPICCGREDRRLKYVAVEKIVV-----------SNMLQSRRSSSQICCSREDRRLKYV----
        S SQICC R  R L+YVAAEKIVV   + +    R SSS ICC RE   LKYVA EKIVV           SNMLQ RRSSSQICCS++D  LKY+    
Subjt:  SLSQICCGRKDRRLQYVAAEKIVVSNMLRS----RRSSSPICCGREDRRLKYVAVEKIVV-----------SNMLQSRRSSSQICCSREDRRLKYV----

Query:  -----AVEAIVVSNMLQSRLSSSQICCSRGYHRLKYVAVEAITVL-----------NMLQSRLSSS
             A + +VVS +LQ R+S SQICC RG   LKYVA E I VL           NMLQ R SSS
Subjt:  -----AVEAIVVSNMLQSRLSSSQICCSRGYHRLKYVAVEAITVL-----------NMLQSRLSSS

KAA0051981.1 hypothetical protein E6C27_scaffold60G004640 [Cucumis melo var. makuwa]9.97e-6452.7Show/hide
Query:  MLQTRIFPCVAVGRIYIFIFSHVLRSGGSTSSFSHMCCSRECPRLKYVVVEKILVS-------------------------KYITAEKIVVSNMLWPRRS
        MLQT IFP VA  RI+IFIFSH     GS+SS S +CCS++  RLKY+V E ++VS                         KY+ AEKI+VSNML PRRS
Subjt:  MLQTRIFPCVAVGRIYIFIFSHVLRSGGSTSSFSHMCCSRECPRLKYVVVEKILVS-------------------------KYITAEKIVVSNMLWPRRS

Query:  LSQICCGRKDRRLQYVAAEKIVVSNMLRSRRSSSPICCGREDRRLKYVAVEKIVV-----------SNMLQSRRSSSQICCSREDRRLKYVAVEAIVVSN
         SQICC +KD  L+Y+ AEK+VVS +L+ R SSS ICC RE R LKYVA EKI+V           SNMLQ RRSSSQICCS++D  LKY+  E +VVS 
Subjt:  LSQICCGRKDRRLQYVAAEKIVVSNMLRSRRSSSPICCGREDRRLKYVAVEKIVV-----------SNMLQSRRSSSQICCSREDRRLKYVAVEAIVVSN

Query:  MLQSRLSSSQICCSRGYHRLKYVAVEAITVLNMLQSRLSSS
        MLQ R SSSQIC  +    LKY+  E + V  ML  R+SSS
Subjt:  MLQSRLSSSQICCSRGYHRLKYVAVEAITVLNMLQSRLSSS

KAA0066592.1 hypothetical protein E6C27_scaffold25G001670 [Cucumis melo var. makuwa]1.33e-6567.06Show/hide
Query:  MCCSRECPRLKYVVVEKILVSKYITAEKIVVSNMLWPRRSLSQICCGRKDRRLQYVAAEKIVVSNMLRSRRSSSPICCGREDRRLKYVAVEKIVVSNMLQ
        MCCSREC RLKY            T EK+V SNML  RRS SQIC  ++ R L+YVA EK+VVSNML+ RRSS  ICC RE RRLKYV VEKIVVSNMLQ
Subjt:  MCCSRECPRLKYVVVEKILVSKYITAEKIVVSNMLWPRRSLSQICCGRKDRRLQYVAAEKIVVSNMLRSRRSSSPICCGREDRRLKYVAVEKIVVSNMLQ

Query:  SRRSSSQICCSREDRRLKYVAVEAIVVSNMLQSRLSSSQICCSRGYHRLKYVAVEAITVLNMLQSRLSSS
        SR SSS ICCS+E RRLKYVA+E ++VSNMLQSR+SSSQICCS+ Y RLKY  VE   V NMLQSR + S
Subjt:  SRRSSSQICCSREDRRLKYVAVEAIVVSNMLQSRLSSSQICCSRGYHRLKYVAVEAITVLNMLQSRLSSS

TYK04576.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.88e-6052.7Show/hide
Query:  MLQTRIFPCVAVGRIYIFIFSHVLRSGGSTSSFSHMCCSRECPRLKYVVVEKILVS-------------------------KYITAEKIVVSNMLWPRRS
        MLQT IFP VA  RI+IFIFSH     GS+SS S +CCS++  RLKY+V E ++VS                         KY+ AEKI+VSNML PRRS
Subjt:  MLQTRIFPCVAVGRIYIFIFSHVLRSGGSTSSFSHMCCSRECPRLKYVVVEKILVS-------------------------KYITAEKIVVSNMLWPRRS

Query:  LSQICCGRKDRRLQYVAAEKIVVSNMLRSRRSSSPICCGREDRRLKYVAVEKIVV-----------SNMLQSRRSSSQICCSREDRRLKYVAVEAIVVSN
         SQICC +KD  L+Y+ AEK+VVS +L+ R SSS ICC RE R LKYVA EKI+V           SNMLQ RRSSSQICCS++D  LKY+  E +VVS 
Subjt:  LSQICCGRKDRRLQYVAAEKIVVSNMLRSRRSSSPICCGREDRRLKYVAVEKIVV-----------SNMLQSRRSSSQICCSREDRRLKYVAVEAIVVSN

Query:  MLQSRLSSSQICCSRGYHRLKYVAVEAITVLNMLQSRLSSS
        MLQ R SSSQIC  +    LKY+  E + V  ML  R+SSS
Subjt:  MLQSRLSSSQICCSRGYHRLKYVAVEAITVLNMLQSRLSSS

TrEMBL top hitse value%identityAlignment
A0A5A7TAU1 Uncharacterized protein4.3e-4656.48Show/hide
Query:  MLQTRIFPCVAVGRIYIFIFSHVLRSGGSTSSFSHMCCSRECPRLKYVVVEKILVSKYITAEKIVVSNMLWPRRSLSQICCGRKDRRLQYVAAEKIVVSN
        ML+T IFPCVA  RI+ FIFSHVL+   S+S    + CSRE  RLKYV VEK                   PRRS SQICC R+  RL+Y+ AE IVVSN
Subjt:  MLQTRIFPCVAVGRIYIFIFSHVLRSGGSTSSFSHMCCSRECPRLKYVVVEKILVSKYITAEKIVVSNMLWPRRSLSQICCGRKDRRLQYVAAEKIVVSN

Query:  MLRSRRSSSPICCGREDRR-----------LKYVAVEKIVVSNMLQSRRSSSQICCSREDRRLKYVAVEAIVVSNMLQSRLSSSQICCSRGYHRLKYVAV
        ML+SR S S IC  RE R             KYVA EKIVVSNMLQSR SSS IC SRE +RLKYVAVE +VVSNML SR SSSQIC ++  HRLK+VA 
Subjt:  MLRSRRSSSPICCGREDRR-----------LKYVAVEKIVVSNMLQSRRSSSQICCSREDRRLKYVAVEAIVVSNMLQSRLSSSQICCSRGYHRLKYVAV

Query:  EAITVLNMLQSRLSSS
        E   V ++L  R+SSS
Subjt:  EAITVLNMLQSRLSSS

A0A5A7TTL9 Uncharacterized protein1.1e-4649.62Show/hide
Query:  MLQTRIFPCVAVGRIYIFIFSHVLRSGGSTSSFSHMCCSRECPRLKYVVVEKILVS---------------------KYITAEKI-----VVSNMLWPRR
        MLQTRIFPCV   RI+IFIFSHVL+  GS+SS S +CCS++   LKY+V EK++VS                     KY+ +EKI     V +  + PR 
Subjt:  MLQTRIFPCVAVGRIYIFIFSHVLRSGGSTSSFSHMCCSRECPRLKYVVVEKILVS---------------------KYITAEKI-----VVSNMLWPRR

Query:  SLSQICCGRKDRRLQYVAAEKIVVSNMLRS----RRSSSPICCGREDRRLKYVAVEKIV-----------VSNMLQSRRSSSQICCSREDRRLKYV----
        S SQICC R  R L+YVAAEKIVV   + +    R SSS ICC RE   LKYVA EKIV           VSNMLQ RRSSSQICCS++D  LKY+    
Subjt:  SLSQICCGRKDRRLQYVAAEKIVVSNMLRS----RRSSSPICCGREDRRLKYVAVEKIV-----------VSNMLQSRRSSSQICCSREDRRLKYV----

Query:  -----AVEAIVVSNMLQSRLSSSQICCSRGYHRLKYVAVEAITVL-----------NMLQSRLSSS
             A + +VVS +LQ R+S SQICC RG   LKYVA E I VL           NMLQ R SSS
Subjt:  -----AVEAIVVSNMLQSRLSSSQICCSRGYHRLKYVAVEAITVL-----------NMLQSRLSSS

A0A5A7UEK9 Uncharacterized protein3.4e-5152.7Show/hide
Query:  MLQTRIFPCVAVGRIYIFIFSHVLRSGGSTSSFSHMCCSRECPRLKYVVVEKILVS-------------------------KYITAEKIVVSNMLWPRRS
        MLQT IFP VA  RI+IFIFSH     GS+SS S +CCS++  RLKY+V E ++VS                         KY+ AEKI+VSNML PRRS
Subjt:  MLQTRIFPCVAVGRIYIFIFSHVLRSGGSTSSFSHMCCSRECPRLKYVVVEKILVS-------------------------KYITAEKIVVSNMLWPRRS

Query:  LSQICCGRKDRRLQYVAAEKIVVSNMLRSRRSSSPICCGREDRR-----------LKYVAVEKIVVSNMLQSRRSSSQICCSREDRRLKYVAVEAIVVSN
         SQICC +KD  L+Y+ AEK+VVS +L+ R SSS ICC RE R            LKYVA EKI+VSNMLQ RRSSSQICCS++D  LKY+  E +VVS 
Subjt:  LSQICCGRKDRRLQYVAAEKIVVSNMLRSRRSSSPICCGREDRR-----------LKYVAVEKIVVSNMLQSRRSSSQICCSREDRRLKYVAVEAIVVSN

Query:  MLQSRLSSSQICCSRGYHRLKYVAVEAITVLNMLQSRLSSS
        MLQ R SSSQIC  +    LKY+  E + V  ML  R+SSS
Subjt:  MLQSRLSSSQICCSRGYHRLKYVAVEAITVLNMLQSRLSSS

A0A5A7VE10 Uncharacterized protein1.3e-5067.06Show/hide
Query:  MCCSRECPRLKYVVVEKILVSKYITAEKIVVSNMLWPRRSLSQICCGRKDRRLQYVAAEKIVVSNMLRSRRSSSPICCGREDRRLKYVAVEKIVVSNMLQ
        MCCSREC RLKY            T EK+V SNML  RRS SQIC  ++ R L+YVA EK+VVSNML+ RRSS  ICC RE RRLKYV VEKIVVSNMLQ
Subjt:  MCCSRECPRLKYVVVEKILVSKYITAEKIVVSNMLWPRRSLSQICCGRKDRRLQYVAAEKIVVSNMLRSRRSSSPICCGREDRRLKYVAVEKIVVSNMLQ

Query:  SRRSSSQICCSREDRRLKYVAVEAIVVSNMLQSRLSSSQICCSRGYHRLKYVAVEAITVLNMLQSRLSSS
        SR SSS ICCS+E RRLKYVA+E ++VSNMLQSR+SSSQICCS+ Y RLKY  VE   V NMLQSR + S
Subjt:  SRRSSSQICCSREDRRLKYVAVEAIVVSNMLQSRLSSSQICCSRGYHRLKYVAVEAITVLNMLQSRLSSS

A0A5D3C2C8 Retrotransposon gag protein3.4e-5152.7Show/hide
Query:  MLQTRIFPCVAVGRIYIFIFSHVLRSGGSTSSFSHMCCSRECPRLKYVVVEKILVS-------------------------KYITAEKIVVSNMLWPRRS
        MLQT IFP VA  RI+IFIFSH     GS+SS S +CCS++  RLKY+V E ++VS                         KY+ AEKI+VSNML PRRS
Subjt:  MLQTRIFPCVAVGRIYIFIFSHVLRSGGSTSSFSHMCCSRECPRLKYVVVEKILVS-------------------------KYITAEKIVVSNMLWPRRS

Query:  LSQICCGRKDRRLQYVAAEKIVVSNMLRSRRSSSPICCGREDRR-----------LKYVAVEKIVVSNMLQSRRSSSQICCSREDRRLKYVAVEAIVVSN
         SQICC +KD  L+Y+ AEK+VVS +L+ R SSS ICC RE R            LKYVA EKI+VSNMLQ RRSSSQICCS++D  LKY+  E +VVS 
Subjt:  LSQICCGRKDRRLQYVAAEKIVVSNMLRSRRSSSPICCGREDRR-----------LKYVAVEKIVVSNMLQSRRSSSQICCSREDRRLKYVAVEAIVVSN

Query:  MLQSRLSSSQICCSRGYHRLKYVAVEAITVLNMLQSRLSSS
        MLQ R SSSQIC  +    LKY+  E + V  ML  R+SSS
Subjt:  MLQSRLSSSQICCSRGYHRLKYVAVEAITVLNMLQSRLSSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCAGACGAGAATCTTCCCATGTGTTGCGGTCGGAAGGATCTACATCTTCATCTTCTCACATGTGTTGCGGTCGGGAGGATCTACATCTTCATTTTCTCACATGTG
TTGCAGTCGAGAATGTCCTCGTCTCAAATATGTTGTAGTCGAGAAGATCCTCGTCTCAAAATATATTACAGCCGAGAAGATCGTCGTCTCAAATATGTTGTGGCCGAGAA
GATCGTTGTCTCAAATATGTTGCGGCCGAAAAGATCGTCGTCTCCAATATGTTGCGGCCGAAAAGATCGTCGTCTCCAATATGTTGCGGTCGAGAAGATCGTCGTCTCCA
ATATGTTGCGGTCGAGAAGATCGTCGTCTCAAATATGTTGCGGTCGAGAAGATCGTCGTCTCAAATATGTTGCAGTCGAGAAGATCGTCGTCTCAAATATGTTGCAGTCG
AGAAGATCGTCGTCTCAAATATGTTGCAGTCGAGGCTATCGTCGTCTCAAATATGTTGCAGTCGAGGCTATCTTCGTCTCAAATATGTTGCAGTCGAGGCTATCATCGTC
TTAAATATGTTGCAGTCGAGGCTATCACCGTCTTAAATATGTTGCAGTCGAGGCTATCATCGTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTGCAGACGAGAATCTTCCCATGTGTTGCGGTCGGAAGGATCTACATCTTCATCTTCTCACATGTGTTGCGGTCGGGAGGATCTACATCTTCATTTTCTCACATGTG
TTGCAGTCGAGAATGTCCTCGTCTCAAATATGTTGTAGTCGAGAAGATCCTCGTCTCAAAATATATTACAGCCGAGAAGATCGTCGTCTCAAATATGTTGTGGCCGAGAA
GATCGTTGTCTCAAATATGTTGCGGCCGAAAAGATCGTCGTCTCCAATATGTTGCGGCCGAAAAGATCGTCGTCTCCAATATGTTGCGGTCGAGAAGATCGTCGTCTCCA
ATATGTTGCGGTCGAGAAGATCGTCGTCTCAAATATGTTGCGGTCGAGAAGATCGTCGTCTCAAATATGTTGCAGTCGAGAAGATCGTCGTCTCAAATATGTTGCAGTCG
AGAAGATCGTCGTCTCAAATATGTTGCAGTCGAGGCTATCGTCGTCTCAAATATGTTGCAGTCGAGGCTATCTTCGTCTCAAATATGTTGCAGTCGAGGCTATCATCGTC
TTAAATATGTTGCAGTCGAGGCTATCACCGTCTTAAATATGTTGCAGTCGAGGCTATCATCGTCTTAA
Protein sequenceShow/hide protein sequence
MLQTRIFPCVAVGRIYIFIFSHVLRSGGSTSSFSHMCCSRECPRLKYVVVEKILVSKYITAEKIVVSNMLWPRRSLSQICCGRKDRRLQYVAAEKIVVSNMLRSRRSSSP
ICCGREDRRLKYVAVEKIVVSNMLQSRRSSSQICCSREDRRLKYVAVEAIVVSNMLQSRLSSSQICCSRGYHRLKYVAVEAITVLNMLQSRLSSS