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IVF0023150 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0023150
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionVPS13 domain-containing protein
Genome locationchr02:9389534..9389710
RNA-Seq ExpressionIVF0023150
SyntenyIVF0023150
Gene Ontology termsNA
InterPro domainsIPR031646 - Vacuolar protein sorting-associated protein 13, second N-terminal domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038223.1 putative vacuolar protein sorting-associated protein 13A isoform X1 [Cucumis melo var. makuwa]3.28e-2998.04Show/hide
Query:  RYGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL
        +YGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL
Subjt:  RYGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL

XP_008443663.1 PREDICTED: putative vacuolar protein sorting-associated protein 13A isoform X1 [Cucumis melo]6.36e-2998.04Show/hide
Query:  RYGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL
        +YGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL
Subjt:  RYGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL

XP_016899794.1 PREDICTED: uncharacterized protein LOC103487212 isoform X2 [Cucumis melo]6.36e-2998.04Show/hide
Query:  RYGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL
        +YGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL
Subjt:  RYGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL

XP_031736164.1 uncharacterized protein LOC101204937 isoform X3 [Cucumis sativus]2.66e-2792.16Show/hide
Query:  RYGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL
        +YGRFRPWC PLSRKVKGWQMLWWHYAQQSVLLDVRK+LKKCSW+YLGQRL
Subjt:  RYGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL

XP_031736165.1 uncharacterized protein LOC101204937 isoform X4 [Cucumis sativus]1.05e-2794.12Show/hide
Query:  RYGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL
        RYGRFRPWC PLSRKVKGWQMLWWHYAQQSVLLDVRK+LKKCSW+YLGQRL
Subjt:  RYGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL

TrEMBL top hitse value%identityAlignment
A0A0A0LXR7 VPS13 domain-containing protein6.3e-2794.74Show/hide
Query:  PNFLYCRYGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL
        PNFLYCRYGRFRPWC PLSRKVKGWQMLWWHYAQQSVLLDVRK+LKKCSW+YLGQRL
Subjt:  PNFLYCRYGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL

A0A1S3B8J3 putative vacuolar protein sorting-associated protein 13A isoform X12.5e-2398.04Show/hide
Query:  RYGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL
        +YGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL
Subjt:  RYGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL

A0A1S4DUY4 uncharacterized protein LOC103487212 isoform X22.5e-2398.04Show/hide
Query:  RYGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL
        +YGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL
Subjt:  RYGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL

A0A5A7T5L4 Putative vacuolar protein sorting-associated protein 13A isoform X12.5e-2398.04Show/hide
Query:  RYGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL
        +YGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL
Subjt:  RYGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL

A0A6J1JMV4 uncharacterized protein LOC111485823 isoform X18.0e-2292.16Show/hide
Query:  RYGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL
        +YGRFRPWC PLSRKVKGWQ+LWWHYAQQSVLLDVRKKLKKCSW+YLGQRL
Subjt:  RYGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL

SwissProt top hitse value%identityAlignment
Q55EI3 Putative vacuolar protein sorting-associated protein 13E5.5e-0442.22Show/hide
Query:  RYGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWK
        RY +FRP C     +VKG   +WWH+A +S++ D R K  + +WK
Subjt:  RYGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWK

Arabidopsis top hitse value%identityAlignment
AT5G24740.1 Protein of unknown function (DUF1162)4.5e-0970.59Show/hide
Query:  RYGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLD
        RYGR+RP  + LSRK  GWQ LWWHYAQ SVL D
Subjt:  RYGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLD

AT5G24740.2 Protein of unknown function (DUF1162)1.1e-1568.63Show/hide
Query:  RYGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL
        RYGR+RP  + LSRK  GWQ LWWHYAQ SVL DVRKKL K SW++L QR+
Subjt:  RYGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTAACTTCTTATACTGCAGGTATGGAAGATTTCGCCCTTGGTGCTCCCCCCTTTCGAGGAAAGTGAAGGGTTGGCAAATGTTATGGTGGCATTATGCGCAACAATC
TGTCTTGTTAGATGTACGAAAAAAATTAAAGAAATGTTCATGGAAATATCTTGGACAGAGACTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCTAACTTCTTATACTGCAGGTATGGAAGATTTCGCCCTTGGTGCTCCCCCCTTTCGAGGAAAGTGAAGGGTTGGCAAATGTTATGGTGGCATTATGCGCAACAATC
TGTCTTGTTAGATGTACGAAAAAAATTAAAGAAATGTTCATGGAAATATCTTGGACAGAGACTGTAA
Protein sequenceShow/hide protein sequence
MPNFLYCRYGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL