; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0023177 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0023177
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr12:17717050..17717956
RNA-Seq ExpressionIVF0023177
SyntenyIVF0023177
Gene Ontology termsNA
InterPro domainsIPR024752 - Myb/SANT-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035621.1 retrotransposon protein [Cucumis melo var. makuwa]1.32e-12370.9Show/hide
Query:  MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI
        M SSSRLPKHTWTKEEEA LVECLVELVNAGGWRSDNGTFRPGYLNQL RMMAFKIPG NIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI
Subjt:  MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI

Query:  VVEKELFDDWVKVS--------------------------------------------------------------GLNMSPDDLMETRTVRVSERRNVS
        V EKE+FDDW   +                                                              GLNMSPDDLMETRT RVSERRNVS
Subjt:  VVEKELFDDWVKVS--------------------------------------------------------------GLNMSPDDLMETRTVRVSERRNVS

Query:  SGSKRKRPGHVTDSGDIVCTAIEYRNEQLHRIAEWPILQRQDASQTRQEIVRQLEAIPELTLMDRCRL
        SGSKRKRPGH TDSGDIV TAIEY NEQLHRIAEWPILQRQDA+QTRQEIVR LEAIPELTLMDRCRL
Subjt:  SGSKRKRPGHVTDSGDIVCTAIEYRNEQLHRIAEWPILQRQDASQTRQEIVRQLEAIPELTLMDRCRL

KAA0038122.1 retrotransposon protein [Cucumis melo var. makuwa]1.32e-12370.9Show/hide
Query:  MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI
        M SSSRLPKHTWTKEEEA LVECLVELVNAGGWRSDNGTFRPGYLNQL RMMAFKIPG NIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI
Subjt:  MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI

Query:  VVEKELFDDWVKVS--------------------------------------------------------------GLNMSPDDLMETRTVRVSERRNVS
        V EKE+FDDW   +                                                              GLNMSPDDLMETRT RVSERRNVS
Subjt:  VVEKELFDDWVKVS--------------------------------------------------------------GLNMSPDDLMETRTVRVSERRNVS

Query:  SGSKRKRPGHVTDSGDIVCTAIEYRNEQLHRIAEWPILQRQDASQTRQEIVRQLEAIPELTLMDRCRL
        SGSKRKRPGH TDSGDIV TAIEY NEQLHRIAEWPILQRQDA+QTRQEIVR LEAIPELTLMDRCRL
Subjt:  SGSKRKRPGHVTDSGDIVCTAIEYRNEQLHRIAEWPILQRQDASQTRQEIVRQLEAIPELTLMDRCRL

KAA0047075.1 retrotransposon protein [Cucumis melo var. makuwa]2.73e-14076.45Show/hide
Query:  MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI
        MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI
Subjt:  MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI

Query:  VVEKELFDDWVKV----------------------------------------------------------------SGLNMSPDDLMETRTVRVSERRN
        VVEKELFDDWVK                                                                 SGLNMSPDDLMETRTVRVSERRN
Subjt:  VVEKELFDDWVKV----------------------------------------------------------------SGLNMSPDDLMETRTVRVSERRN

Query:  VSSGSKRKRPGHVTDSGDIVCTAIEYRNEQLHRIAEWPILQRQDASQTRQEIVRQLEAIPELTLMDRCRLCVTSMT
        VSSGSKRKRPGHVTDSGDIVCTAIEYRNEQLHRIAEWPILQRQDASQTRQEIVRQLEAIPELTLMDRCRLCVTSMT
Subjt:  VSSGSKRKRPGHVTDSGDIVCTAIEYRNEQLHRIAEWPILQRQDASQTRQEIVRQLEAIPELTLMDRCRLCVTSMT

KAA0060663.1 retrotransposon protein [Cucumis melo var. makuwa]1.61e-12579.24Show/hide
Query:  MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI
        M SSSRLPKHTWTKEEEA     LVELVNAGGWRSDNGTFRPGYLNQL RMMAFKIPGCNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI
Subjt:  MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI

Query:  VVEKELFDDWVKV------------------------------SGLNMSPDDLMETRTVRVSERRNVSSGSKRKRPGHVTDSGDIVCTAIEYRNEQLHRI
        V EKE+FDDW +                                GLNMSPDDLMETRT RVSERRNVS+GSKRKRPGH TDSGDIV TAIEY NEQLHRI
Subjt:  VVEKELFDDWVKV------------------------------SGLNMSPDDLMETRTVRVSERRNVSSGSKRKRPGHVTDSGDIVCTAIEYRNEQLHRI

Query:  AEWPILQRQDASQTRQEIVRQLEAIPELTLMDRCRL
        AEWPILQ QDASQTRQEIVRQLEAIPELTLMDRCRL
Subjt:  AEWPILQRQDASQTRQEIVRQLEAIPELTLMDRCRL

TYK05082.1 retrotransposon protein [Cucumis melo var. makuwa]2.04e-13574.64Show/hide
Query:  MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI
        MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI
Subjt:  MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI

Query:  VVEKELFDDWVKVS----------------------------------------------------------------GLNMSPDDLMETRTVRVSERRN
        VVEKELFDDWVK                                                                  GLNMSPDDLMETRT RVSERRN
Subjt:  VVEKELFDDWVKVS----------------------------------------------------------------GLNMSPDDLMETRTVRVSERRN

Query:  VSSGSKRKRPGHVTDSGDIVCTAIEYRNEQLHRIAEWPILQRQDASQTRQEIVRQLEAIPELTLMDRCRLCVTSMT
        VSSGSKRKRPGH TDSGDIV TAIEY NEQLHRIAEWPILQRQDASQTRQEIVRQLEAIPELTLMDRCRLCVTSMT
Subjt:  VSSGSKRKRPGHVTDSGDIVCTAIEYRNEQLHRIAEWPILQRQDASQTRQEIVRQLEAIPELTLMDRCRLCVTSMT

TrEMBL top hitse value%identityAlignment
A0A5A7U098 Retrotransposon protein4.4e-11076.45Show/hide
Query:  MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI
        MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI
Subjt:  MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI

Query:  VVEKELFDDWVK----------------------------------------------------------------VSGLNMSPDDLMETRTVRVSERRN
        VVEKELFDDWVK                                                                 SGLNMSPDDLMETRTVRVSERRN
Subjt:  VVEKELFDDWVK----------------------------------------------------------------VSGLNMSPDDLMETRTVRVSERRN

Query:  VSSGSKRKRPGHVTDSGDIVCTAIEYRNEQLHRIAEWPILQRQDASQTRQEIVRQLEAIPELTLMDRCRLCVTSMT
        VSSGSKRKRPGHVTDSGDIVCTAIEYRNEQLHRIAEWPILQRQDASQTRQEIVRQLEAIPELTLMDRCRLCVTSMT
Subjt:  VSSGSKRKRPGHVTDSGDIVCTAIEYRNEQLHRIAEWPILQRQDASQTRQEIVRQLEAIPELTLMDRCRLCVTSMT

A0A5A7UME4 Retrotransposon protein1.1e-9770.9Show/hide
Query:  MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI
        M SSSRLPKHTWTKEEEA LVECLVELVNAGGWRSDNGTFRPGYLNQL RMMAFKIPG NIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI
Subjt:  MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI

Query:  VVEKELFDDW--------------------------------------------------------------VKVSGLNMSPDDLMETRTVRVSERRNVS
        V EKE+FDDW                                                              +   GLNMSPDDLMETRT RVSERRNVS
Subjt:  VVEKELFDDW--------------------------------------------------------------VKVSGLNMSPDDLMETRTVRVSERRNVS

Query:  SGSKRKRPGHVTDSGDIVCTAIEYRNEQLHRIAEWPILQRQDASQTRQEIVRQLEAIPELTLMDRCRL
        SGSKRKRPGH TDSGDIV TAIEY NEQLHRIAEWPILQRQDA+QTRQEIVR LEAIPELTLMDRCRL
Subjt:  SGSKRKRPGHVTDSGDIVCTAIEYRNEQLHRIAEWPILQRQDASQTRQEIVRQLEAIPELTLMDRCRL

A0A5A7UXH8 Retrotransposon protein1.3e-9879.24Show/hide
Query:  MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI
        M SSSRLPKHTWTKEEEA     LVELVNAGGWRSDNGTFRPGYLNQL RMMAFKIPGCNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI
Subjt:  MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI

Query:  VVEKELFDDWVK------------------------------VSGLNMSPDDLMETRTVRVSERRNVSSGSKRKRPGHVTDSGDIVCTAIEYRNEQLHRI
        V EKE+FDDW +                                GLNMSPDDLMETRT RVSERRNVS+GSKRKRPGH TDSGDIV TAIEY NEQLHRI
Subjt:  VVEKELFDDWVK------------------------------VSGLNMSPDDLMETRTVRVSERRNVSSGSKRKRPGHVTDSGDIVCTAIEYRNEQLHRI

Query:  AEWPILQRQDASQTRQEIVRQLEAIPELTLMDRCRL
        AEWPILQ QDASQTRQEIVRQLEAIPELTLMDRCRL
Subjt:  AEWPILQRQDASQTRQEIVRQLEAIPELTLMDRCRL

A0A5D3C1M0 Retrotransposon protein2.2e-10674.64Show/hide
Query:  MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI
        MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI
Subjt:  MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI

Query:  VVEKELFDDWVK----------------------------------------------------------------VSGLNMSPDDLMETRTVRVSERRN
        VVEKELFDDWVK                                                                  GLNMSPDDLMETRT RVSERRN
Subjt:  VVEKELFDDWVK----------------------------------------------------------------VSGLNMSPDDLMETRTVRVSERRN

Query:  VSSGSKRKRPGHVTDSGDIVCTAIEYRNEQLHRIAEWPILQRQDASQTRQEIVRQLEAIPELTLMDRCRLCVTSMT
        VSSGSKRKRPGH TDSGDIV TAIEY NEQLHRIAEWPILQRQDASQTRQEIVRQLEAIPELTLMDRCRLCVTSMT
Subjt:  VSSGSKRKRPGHVTDSGDIVCTAIEYRNEQLHRIAEWPILQRQDASQTRQEIVRQLEAIPELTLMDRCRLCVTSMT

A0A5D3DPR5 Retrotransposon protein1.1e-9770.9Show/hide
Query:  MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI
        M SSSRLPKHTWTKEEEA LVECLVELVNAGGWRSDNGTFRPGYLNQL RMMAFKIPG NIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI
Subjt:  MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCI

Query:  VVEKELFDDW--------------------------------------------------------------VKVSGLNMSPDDLMETRTVRVSERRNVS
        V EKE+FDDW                                                              +   GLNMSPDDLMETRT RVSERRNVS
Subjt:  VVEKELFDDW--------------------------------------------------------------VKVSGLNMSPDDLMETRTVRVSERRNVS

Query:  SGSKRKRPGHVTDSGDIVCTAIEYRNEQLHRIAEWPILQRQDASQTRQEIVRQLEAIPELTLMDRCRL
        SGSKRKRPGH TDSGDIV TAIEY NEQLHRIAEWPILQRQDA+QTRQEIVR LEAIPELTLMDRCRL
Subjt:  SGSKRKRPGHVTDSGDIVCTAIEYRNEQLHRIAEWPILQRQDASQTRQEIVRQLEAIPELTLMDRCRL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGTTCATCGAGACTACCAAAACATACTTGGACTAAAGAGGAAGAGGCAAGCCTCGTGGAGTGCCTCGTGGAGTTGGTCAATGCTGGTGGGTGGAGGTCCGACAA
TGGGACCTTTCGCCCCGGGTACTTAAATCAGCTGGTGAGAATGATGGCCTTCAAGATCCCAGGTTGTAATATCCATGCTTCAACCATCGATAGTCGAATCAAATTGATGA
AGAGAATGTTTCATGCACTTGCGGAGATGCGTGGCCCAAACTGTAGTGGTTTTGGGTGGAATGATGAAAAAAAATGCATCGTCGTTGAGAAAGAACTCTTTGACGATTGG
GTAAAGGTTTCGGGATTGAACATGTCGCCTGATGATTTGATGGAAACCAGAACCGTAAGGGTCAGTGAACGTAGGAATGTTTCAAGCGGGTCTAAGCGGAAACGTCCAGG
ACATGTCACAGATAGTGGGGACATAGTTTGTACTGCCATTGAGTACAGAAATGAACAACTTCATCGCATTGCTGAATGGCCTATCCTACAACGTCAAGACGCAAGCCAAA
CACGTCAAGAGATTGTTCGACAGTTGGAGGCCATCCCTGAGCTCACATTGATGGATAGGTGTCGCTTATGCGTAACGTCGATGACATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAGTTCATCGAGACTACCAAAACATACTTGGACTAAAGAGGAAGAGGCAAGCCTCGTGGAGTGCCTCGTGGAGTTGGTCAATGCTGGTGGGTGGAGGTCCGACAA
TGGGACCTTTCGCCCCGGGTACTTAAATCAGCTGGTGAGAATGATGGCCTTCAAGATCCCAGGTTGTAATATCCATGCTTCAACCATCGATAGTCGAATCAAATTGATGA
AGAGAATGTTTCATGCACTTGCGGAGATGCGTGGCCCAAACTGTAGTGGTTTTGGGTGGAATGATGAAAAAAAATGCATCGTCGTTGAGAAAGAACTCTTTGACGATTGG
GTAAAGGTTTCGGGATTGAACATGTCGCCTGATGATTTGATGGAAACCAGAACCGTAAGGGTCAGTGAACGTAGGAATGTTTCAAGCGGGTCTAAGCGGAAACGTCCAGG
ACATGTCACAGATAGTGGGGACATAGTTTGTACTGCCATTGAGTACAGAAATGAACAACTTCATCGCATTGCTGAATGGCCTATCCTACAACGTCAAGACGCAAGCCAAA
CACGTCAAGAGATTGTTCGACAGTTGGAGGCCATCCCTGAGCTCACATTGATGGATAGGTGTCGCTTATGCGTAACGTCGATGACATGA
Protein sequenceShow/hide protein sequence
MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVVEKELFDDW
VKVSGLNMSPDDLMETRTVRVSERRNVSSGSKRKRPGHVTDSGDIVCTAIEYRNEQLHRIAEWPILQRQDASQTRQEIVRQLEAIPELTLMDRCRLCVTSMT