; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0023182 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0023182
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr03:14485998..14486728
RNA-Seq ExpressionIVF0023182
SyntenyIVF0023182
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032819.1 retrotransposon protein [Cucumis melo var. makuwa]1.70e-11479.62Show/hide
Query:  MVEKLLGCQVHATTVIDCRIKILKRTFQAIAEMWGPTCGGFGWNDEENCIIAKKGLFDNWVRLHPATKELLNKLFPYYEELTYVFGCDRATSRFVETLVD
        MVEKL GCQV ATTVIDCRIK LKRTF AI +M GP C GFGWNDEE  IIAKK LFDNWVR HP TK LLNK FPY+++LTYVF  D+AT RF ET VD
Subjt:  MVEKLLGCQVHATTVIDCRIKILKRTFQAIAEMWGPTCGGFGWNDEENCIIAKKGLFDNWVRLHPATKELLNKLFPYYEELTYVFGCDRATSRFVETLVD

Query:  AGSNEPGEYDGFDMGDGNEEFLSVYSQGIYLSQDDVRASRPSRASEGRTGSSGSKRKRGSRREVDVEGIHLALDQTNDQLRMIAEWPARALANDNHV-RR
         GSNEPG Y+ FDMGDGNEEF  VYSQGI LSQDD+RASRPSRA EGRTGSSGSKRKRGS+R +DVEGIHLALDQTN+QLR IAEWPAR LANDNH+  R
Subjt:  AGSNEPGEYDGFDMGDGNEEFLSVYSQGIYLSQDDVRASRPSRASEGRTGSSGSKRKRGSRREVDVEGIHLALDQTNDQLRMIAEWPARALANDNHV-RR

Query:  NSSAYCVRCQN
        NSSAYCVRCQN
Subjt:  NSSAYCVRCQN

KAA0047154.1 retrotransposon protein [Cucumis melo var. makuwa]6.39e-12991.54Show/hide
Query:  TVIDCRIKILK----RTFQAIAEMWGPTCGGFGWNDEENCIIAKKGLFDNWVRLHPATKELLNKLFPYYEELTYVFGCDRATSRFVETLVDAGSNEPGEY
        T+++C ++++         AIAEMWGPTCGGFGWNDEENCIIAKKGLFDNWVRLHPATKELLNKLFPYYEELTYVFGCDRATSRFVETLVDAGSNEPGEY
Subjt:  TVIDCRIKILK----RTFQAIAEMWGPTCGGFGWNDEENCIIAKKGLFDNWVRLHPATKELLNKLFPYYEELTYVFGCDRATSRFVETLVDAGSNEPGEY

Query:  DGFDMGDGNEEFLSVYSQGIYLSQDDVRASRPSRASEGRTGSSGSKRKRGSRREVDVEGIHLALDQTNDQLRMIAEWPARALANDNHVRRNSSAYCVRCQ
        DGFDMGDGNEEFLSVYSQGIYLSQDDVRASRPSRASEGRTGSSGSKRKRGSRREVDVEGIHLALDQTNDQLRMIAEWPARALANDNHVRRNSSAYCVRCQ
Subjt:  DGFDMGDGNEEFLSVYSQGIYLSQDDVRASRPSRASEGRTGSSGSKRKRGSRREVDVEGIHLALDQTNDQLRMIAEWPARALANDNHVRRNSSAYCVRCQ

Query:  N
        N
Subjt:  N

KAA0055597.1 retrotransposon protein [Cucumis melo var. makuwa]1.19e-11078.16Show/hide
Query:  MVEKLLGCQVHATTVIDCRIKILKRTFQAIAEMWGPTCGGFGWNDEENCIIAKKGLFDNWVRLHPATKELLNKLFPYYEELTYVFGCDRATSRFVETLVD
        M EKL GCQV ATTVIDCRIK LKR FQ I EMWGP C GFGWNDEE CIIA+K LFDNWVR HPATK L NK FPYY+ELTYVFG DRAT RF ET  D
Subjt:  MVEKLLGCQVHATTVIDCRIKILKRTFQAIAEMWGPTCGGFGWNDEENCIIAKKGLFDNWVRLHPATKELLNKLFPYYEELTYVFGCDRATSRFVETLVD

Query:  AGSNEPGEYDGFDMGDGNEEFLSVYSQGIYLSQDDVRASRPSRASEGRTGSSGSKRKRGSRREVDVEGIHLALDQTNDQLRMIAEWPARALANDNHVRRN
         GSNEP EYD FD+GDGNEEF  VYSQGI L QDDV ASRPSR  EGRTGSSGSKRKRGS+REVDVEG+HLALDQTN+QLRMIA W ARALANDNHVR  
Subjt:  AGSNEPGEYDGFDMGDGNEEFLSVYSQGIYLSQDDVRASRPSRASEGRTGSSGSKRKRGSRREVDVEGIHLALDQTNDQLRMIAEWPARALANDNHVRRN

Query:  SSAYCV
        +  +C+
Subjt:  SSAYCV

KAA0062964.1 retrotransposon protein [Cucumis melo var. makuwa]2.38e-11080.9Show/hide
Query:  MVEKLLGCQVHATTVIDCRIKILKRTFQAIAEMWGPTCGGFGWNDEENCIIAKKGLFDNWVRLHPATKELLNKLFPYYEELTYVFGCDRATSRFVETLVD
        M EKL GCQV ATTVIDCRIK LKRTFQAIAEM GP C GFGWNDEE CI+A+K LFDNWVR HPA K LLNK FPYY+ELTYVFGCDRAT RF ET  D
Subjt:  MVEKLLGCQVHATTVIDCRIKILKRTFQAIAEMWGPTCGGFGWNDEENCIIAKKGLFDNWVRLHPATKELLNKLFPYYEELTYVFGCDRATSRFVETLVD

Query:  AGSNEPGE-YDGFDMGDGNEEFLSVYSQGIYLSQDDVRASRPSRASEGRTGSSGSKRKRGSRREVDVEGIHLALDQTNDQLRMIAEWPARALANDNHVR
         GSNEPG  YD FDMGDGNE+F SVYSQG+ +SQDDVRASRPSRASEGRTGSSGSKRKRGS+R+ ++E IHLALDQTN+QLR IAEWPAR LANDNHVR
Subjt:  AGSNEPGE-YDGFDMGDGNEEFLSVYSQGIYLSQDDVRASRPSRASEGRTGSSGSKRKRGSRREVDVEGIHLALDQTNDQLRMIAEWPARALANDNHVR

KAA0067583.1 retrotransposon protein [Cucumis melo var. makuwa]4.83e-11479.15Show/hide
Query:  MVEKLLGCQVHATTVIDCRIKILKRTFQAIAEMWGPTCGGFGWNDEENCIIAKKGLFDNWVRLHPATKELLNKLFPYYEELTYVFGCDRATSRFVETLVD
        M EKL GCQV ATTVIDCRIK LKRTFQAIAEM GP C GFGWNDEE CI+A+K LFDNWVR HPA KELLNK F YY+ELTYVFG DRAT RF ET  D
Subjt:  MVEKLLGCQVHATTVIDCRIKILKRTFQAIAEMWGPTCGGFGWNDEENCIIAKKGLFDNWVRLHPATKELLNKLFPYYEELTYVFGCDRATSRFVETLVD

Query:  AGSNEPGE-YDGFDMGDGNEEFLSVYSQGIYLSQDDVRASRPSRASEGRTGSSGSKRKRGSRREVDVEGIHLALDQTNDQLRMIAEWPARALANDNHVRR
         GSNEPG  YD FDMGDGNE+F  VYSQG+ +SQDDVRASRPSRASEGRTGSSGSKRKRGS+R+ DVE I+L LDQTN+QLR IAEWPAR LANDNH  R
Subjt:  AGSNEPGE-YDGFDMGDGNEEFLSVYSQGIYLSQDDVRASRPSRASEGRTGSSGSKRKRGSRREVDVEGIHLALDQTNDQLRMIAEWPARALANDNHVRR

Query:  NSSAYCVRCQN
        N S YCVRCQN
Subjt:  NSSAYCVRCQN

TrEMBL top hitse value%identityAlignment
A0A5A7V6W3 Retrotransposon protein3.0e-8780.9Show/hide
Query:  MVEKLLGCQVHATTVIDCRIKILKRTFQAIAEMWGPTCGGFGWNDEENCIIAKKGLFDNWVRLHPATKELLNKLFPYYEELTYVFGCDRATSRFVETLVD
        M EKL GCQV ATTVIDCRIK LKRTFQAIAEM GP C GFGWNDEE CI+A+K LFDNWVR HPA K LLNK FPYY+ELTYVFGCDRAT RF ET  D
Subjt:  MVEKLLGCQVHATTVIDCRIKILKRTFQAIAEMWGPTCGGFGWNDEENCIIAKKGLFDNWVRLHPATKELLNKLFPYYEELTYVFGCDRATSRFVETLVD

Query:  AGSNEP-GEYDGFDMGDGNEEFLSVYSQGIYLSQDDVRASRPSRASEGRTGSSGSKRKRGSRREVDVEGIHLALDQTNDQLRMIAEWPARALANDNHVR
         GSNEP G YD FDMGDGNE+F SVYSQG+ +SQDDVRASRPSRASEGRTGSSGSKRKRGS+R+ ++E IHLALDQTN+QLR IAEWPAR LANDNHVR
Subjt:  AGSNEP-GEYDGFDMGDGNEEFLSVYSQGIYLSQDDVRASRPSRASEGRTGSSGSKRKRGSRREVDVEGIHLALDQTNDQLRMIAEWPARALANDNHVR

A0A5A7VHM3 Retrotransposon protein5.0e-9079.15Show/hide
Query:  MVEKLLGCQVHATTVIDCRIKILKRTFQAIAEMWGPTCGGFGWNDEENCIIAKKGLFDNWVRLHPATKELLNKLFPYYEELTYVFGCDRATSRFVETLVD
        M EKL GCQV ATTVIDCRIK LKRTFQAIAEM GP C GFGWNDEE CI+A+K LFDNWVR HPA KELLNK F YY+ELTYVFG DRAT RF ET  D
Subjt:  MVEKLLGCQVHATTVIDCRIKILKRTFQAIAEMWGPTCGGFGWNDEENCIIAKKGLFDNWVRLHPATKELLNKLFPYYEELTYVFGCDRATSRFVETLVD

Query:  AGSNEP-GEYDGFDMGDGNEEFLSVYSQGIYLSQDDVRASRPSRASEGRTGSSGSKRKRGSRREVDVEGIHLALDQTNDQLRMIAEWPARALANDNHVRR
         GSNEP G YD FDMGDGNE+F  VYSQG+ +SQDDVRASRPSRASEGRTGSSGSKRKRGS+R+ DVE I+L LDQTN+QLR IAEWPAR LANDNH  R
Subjt:  AGSNEP-GEYDGFDMGDGNEEFLSVYSQGIYLSQDDVRASRPSRASEGRTGSSGSKRKRGSRREVDVEGIHLALDQTNDQLRMIAEWPARALANDNHVRR

Query:  NSSAYCVRCQN
        N S YCVRCQN
Subjt:  NSSAYCVRCQN

A0A5D3BQ18 Retrotransposon protein8.8e-10391.54Show/hide
Query:  TVIDCRIKILK----RTFQAIAEMWGPTCGGFGWNDEENCIIAKKGLFDNWVRLHPATKELLNKLFPYYEELTYVFGCDRATSRFVETLVDAGSNEPGEY
        T+++C ++++         AIAEMWGPTCGGFGWNDEENCIIAKKGLFDNWVRLHPATKELLNKLFPYYEELTYVFGCDRATSRFVETLVDAGSNEPGEY
Subjt:  TVIDCRIKILK----RTFQAIAEMWGPTCGGFGWNDEENCIIAKKGLFDNWVRLHPATKELLNKLFPYYEELTYVFGCDRATSRFVETLVDAGSNEPGEY

Query:  DGFDMGDGNEEFLSVYSQGIYLSQDDVRASRPSRASEGRTGSSGSKRKRGSRREVDVEGIHLALDQTNDQLRMIAEWPARALANDNHVRRNSSAYCVRCQ
        DGFDMGDGNEEFLSVYSQGIYLSQDDVRASRPSRASEGRTGSSGSKRKRGSRREVDVEGIHLALDQTNDQLRMIAEWPARALANDNHVRRNSSAYCVRCQ
Subjt:  DGFDMGDGNEEFLSVYSQGIYLSQDDVRASRPSRASEGRTGSSGSKRKRGSRREVDVEGIHLALDQTNDQLRMIAEWPARALANDNHVRRNSSAYCVRCQ

Query:  N
        N
Subjt:  N

A0A5D3BQP3 Retrotransposon protein6.7e-8778.16Show/hide
Query:  MVEKLLGCQVHATTVIDCRIKILKRTFQAIAEMWGPTCGGFGWNDEENCIIAKKGLFDNWVRLHPATKELLNKLFPYYEELTYVFGCDRATSRFVETLVD
        M EKL GCQV ATTVIDCRIK LKR FQ I EMWGP C GFGWNDEE CIIA+K LFDNWVR HPATK L NK FPYY+ELTYVFG DRAT RF ET  D
Subjt:  MVEKLLGCQVHATTVIDCRIKILKRTFQAIAEMWGPTCGGFGWNDEENCIIAKKGLFDNWVRLHPATKELLNKLFPYYEELTYVFGCDRATSRFVETLVD

Query:  AGSNEPGEYDGFDMGDGNEEFLSVYSQGIYLSQDDVRASRPSRASEGRTGSSGSKRKRGSRREVDVEGIHLALDQTNDQLRMIAEWPARALANDNHVRRN
         GSNEP EYD FD+GDGNEEF  VYSQGI L QDDV ASRPSR  EGRTGSSGSKRKRGS+REVDVEG+HLALDQTN+QLRMIA W ARALANDNHVR  
Subjt:  AGSNEPGEYDGFDMGDGNEEFLSVYSQGIYLSQDDVRASRPSRASEGRTGSSGSKRKRGSRREVDVEGIHLALDQTNDQLRMIAEWPARALANDNHVRRN

Query:  SSAYCV
        +  +C+
Subjt:  SSAYCV

A0A5D3E2S0 Retrotransposon protein2.5e-8979.62Show/hide
Query:  MVEKLLGCQVHATTVIDCRIKILKRTFQAIAEMWGPTCGGFGWNDEENCIIAKKGLFDNWVRLHPATKELLNKLFPYYEELTYVFGCDRATSRFVETLVD
        MVEKL GCQV ATTVIDCRIK LKRTF AI +M GP C GFGWNDEE  IIAKK LFDNWVR HP TK LLNK FPY+++LTYVF  D+AT RF ET VD
Subjt:  MVEKLLGCQVHATTVIDCRIKILKRTFQAIAEMWGPTCGGFGWNDEENCIIAKKGLFDNWVRLHPATKELLNKLFPYYEELTYVFGCDRATSRFVETLVD

Query:  AGSNEPGEYDGFDMGDGNEEFLSVYSQGIYLSQDDVRASRPSRASEGRTGSSGSKRKRGSRREVDVEGIHLALDQTNDQLRMIAEWPARALANDNHV-RR
         GSNEPG Y+ FDMGDGNEEF  VYSQGI LSQDD+RASRPSRA EGRTGSSGSKRKRGS+R +DVEGIHLALDQTN+QLR IAEWPAR LANDNH+  R
Subjt:  AGSNEPGEYDGFDMGDGNEEFLSVYSQGIYLSQDDVRASRPSRASEGRTGSSGSKRKRGSRREVDVEGIHLALDQTNDQLRMIAEWPARALANDNHV-RR

Query:  NSSAYCVRCQN
        NSSAYCVRCQN
Subjt:  NSSAYCVRCQN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G02210.1 unknown protein1.4e-0422.64Show/hide
Query:  VHATTVIDCRIKILKRTFQAIAEMWGPTCGGFGWNDEENCIIAKKGLFDNWVRLHPATKELLNKLFPYYEELTYVFGCDRATSRFVETLVDAGSNEP--G
        ++   V+  R K L+  F+++  +      GF W+D    ++A   ++D ++++HP ++    K  P Y++L  V+  D  +    E  +  G ++    
Subjt:  VHATTVIDCRIKILKRTFQAIAEMWGPTCGGFGWNDEENCIIAKKGLFDNWVRLHPATKELLNKLFPYYEELTYVFGCDRATSRFVETLVDAGSNEP--G

Query:  EYDGFD
        E DG++
Subjt:  EYDGFD

AT4G02210.2 unknown protein1.4e-0422.64Show/hide
Query:  VHATTVIDCRIKILKRTFQAIAEMWGPTCGGFGWNDEENCIIAKKGLFDNWVRLHPATKELLNKLFPYYEELTYVFGCDRATSRFVETLVDAGSNEP--G
        ++   V+  R K L+  F+++  +      GF W+D    ++A   ++D ++++HP ++    K  P Y++L  V+  D  +    E  +  G ++    
Subjt:  VHATTVIDCRIKILKRTFQAIAEMWGPTCGGFGWNDEENCIIAKKGLFDNWVRLHPATKELLNKLFPYYEELTYVFGCDRATSRFVETLVDAGSNEP--G

Query:  EYDGFD
        E DG++
Subjt:  EYDGFD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGAGAAATTACTTGGATGTCAGGTCCACGCAACAACTGTAATTGATTGTAGAATAAAGATACTGAAGCGGACATTCCAGGCCATTGCCGAAATGTGGGGGCCAAC
GTGCGGTGGCTTTGGGTGGAACGATGAAGAGAACTGTATCATTGCGAAGAAAGGATTATTTGATAATTGGGTTAGGTTGCATCCTGCAACGAAAGAACTCCTGAACAAAC
TGTTTCCGTATTACGAAGAACTTACATATGTGTTCGGTTGCGATAGGGCGACGAGTCGGTTCGTTGAGACATTGGTCGACGCGGGCTCTAACGAGCCTGGCGAGTATGAT
GGATTTGATATGGGGGATGGAAACGAGGAGTTCCTGTCCGTGTACAGCCAGGGGATTTACCTGTCACAGGATGATGTACGTGCATCACGACCTTCTCGCGCTTCAGAGGG
TAGGACCGGATCGAGTGGATCCAAGAGGAAGAGGGGAAGTCGGCGAGAGGTGGATGTTGAAGGCATACATCTGGCACTCGACCAAACAAACGACCAACTCAGGATGATTG
CGGAGTGGCCTGCACGCGCCCTTGCCAATGACAACCATGTGCGTAGGAATTCTTCTGCATATTGCGTGAGATGCCAGAACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGGAGAAATTACTTGGATGTCAGGTCCACGCAACAACTGTAATTGATTGTAGAATAAAGATACTGAAGCGGACATTCCAGGCCATTGCCGAAATGTGGGGGCCAAC
GTGCGGTGGCTTTGGGTGGAACGATGAAGAGAACTGTATCATTGCGAAGAAAGGATTATTTGATAATTGGGTTAGGTTGCATCCTGCAACGAAAGAACTCCTGAACAAAC
TGTTTCCGTATTACGAAGAACTTACATATGTGTTCGGTTGCGATAGGGCGACGAGTCGGTTCGTTGAGACATTGGTCGACGCGGGCTCTAACGAGCCTGGCGAGTATGAT
GGATTTGATATGGGGGATGGAAACGAGGAGTTCCTGTCCGTGTACAGCCAGGGGATTTACCTGTCACAGGATGATGTACGTGCATCACGACCTTCTCGCGCTTCAGAGGG
TAGGACCGGATCGAGTGGATCCAAGAGGAAGAGGGGAAGTCGGCGAGAGGTGGATGTTGAAGGCATACATCTGGCACTCGACCAAACAAACGACCAACTCAGGATGATTG
CGGAGTGGCCTGCACGCGCCCTTGCCAATGACAACCATGTGCGTAGGAATTCTTCTGCATATTGCGTGAGATGCCAGAACTAA
Protein sequenceShow/hide protein sequence
MVEKLLGCQVHATTVIDCRIKILKRTFQAIAEMWGPTCGGFGWNDEENCIIAKKGLFDNWVRLHPATKELLNKLFPYYEELTYVFGCDRATSRFVETLVDAGSNEPGEYD
GFDMGDGNEEFLSVYSQGIYLSQDDVRASRPSRASEGRTGSSGSKRKRGSRREVDVEGIHLALDQTNDQLRMIAEWPARALANDNHVRRNSSAYCVRCQN