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IVF0023191 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0023191
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionDNA-directed RNA polymerase 1B
Genome locationchr04:21309927..21310531
RNA-Seq ExpressionIVF0023191
SyntenyIVF0023191
Gene Ontology termsGO:0006390 - mitochondrial transcription (biological process)
GO:0016020 - membrane (cellular component)
GO:0034245 - mitochondrial DNA-directed RNA polymerase complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAY64586.1 hypothetical protein CUMW_234660 [Citrus unshiu]1.42e-0850.79Show/hide
Query:  ILRKKEAHVKGFVFHFLSIVSILVPIIFQLGCGLVQLLMETAYIQPPVDELGDGPVDICPAFV
        I ++K   V+G V   + +       + ++GC L+QLLMETAYIQPPVD+LGD P DI PAFV
Subjt:  ILRKKEAHVKGFVFHFLSIVSILVPIIFQLGCGLVQLLMETAYIQPPVDELGDGPVDICPAFV

KAA0054861.1 DNA-directed RNA polymerase 1B [Cucumis melo var. makuwa]1.67e-5878.29Show/hide
Query:  MRGRNRSSLSSLEERVKEGRRSFVEETQPVADKDHDILRKK----------------------------EAHVKGFVFHFLSIVSILVPIIFQLGCGLVQ
        MRGRNRSSLSSLEERVKEGRRSFVEETQPVADKDHDILRKK                            EAHVKGFVFHFLSIVSILVPIIFQLGCGLVQ
Subjt:  MRGRNRSSLSSLEERVKEGRRSFVEETQPVADKDHDILRKK----------------------------EAHVKGFVFHFLSIVSILVPIIFQLGCGLVQ

Query:  LLMETAYIQPPVDELGDGPVDICPAFVLY
        LLMETAYIQPPVDELGDGPVDICPAFVLY
Subjt:  LLMETAYIQPPVDELGDGPVDICPAFVLY

PQQ17069.1 DNA-directed RNA polymerase 1 mitochondrial [Prunus yedoensis var. nudiflora]1.45e-0874.29Show/hide
Query:  QLGCGLVQLLMETAYIQPPVDELGDGPVDICPAFV
        ++GC L+QLLM+TAYIQPPVD++GDGP DI PAFV
Subjt:  QLGCGLVQLLMETAYIQPPVDELGDGPVDICPAFV

TQD93155.1 hypothetical protein C1H46_021248 [Malus baccata]5.78e-0974.29Show/hide
Query:  QLGCGLVQLLMETAYIQPPVDELGDGPVDICPAFV
        ++GC L+QLLM+TAYIQPPVD+ GDG +DICPAFV
Subjt:  QLGCGLVQLLMETAYIQPPVDELGDGPVDICPAFV

XP_028122443.1 LOW QUALITY PROTEIN: DNA-directed RNA polymerase 1B, mitochondrial-like [Camellia sinensis]4.31e-0977.14Show/hide
Query:  QLGCGLVQLLMETAYIQPPVDELGDGPVDICPAFV
        ++GC L+QLLMETAYIQPPVD+LGDGP DI PAF+
Subjt:  QLGCGLVQLLMETAYIQPPVDELGDGPVDICPAFV

TrEMBL top hitse value%identityAlignment
A0A059D8C5 DNA-directed RNA polymerase1.6e-0673.53Show/hide
Query:  QLGCGLVQLLMETAYIQPPVDELGDGPVDICPAF
        ++GC L+QLLMETAYIQPP+D+LGDGP D+ PAF
Subjt:  QLGCGLVQLLMETAYIQPPVDELGDGPVDICPAF

A0A0A0LBV4 Uncharacterized protein2.8e-3077.78Show/hide
Query:  LSSLEERVKEGRRSFVEETQPVAD------KDHDILRKKEAHVKGFVFHFLSIVSILVPIIFQLGCGLVQLLMETAYIQPPVDELGDGPVDICPAFVLY
        LSSLEERVK GRRSF EET+PVA+      KDHD L+KKEAHVK FVFHFLS VSILV I FQLGC LVQLLMETAYIQPPVD+LGDG +DI PAFV Y
Subjt:  LSSLEERVKEGRRSFVEETQPVAD------KDHDILRKKEAHVKGFVFHFLSIVSILVPIIFQLGCGLVQLLMETAYIQPPVDELGDGPVDICPAFVLY

A0A540M329 DNA-directed RNA polymerase7.4e-0774.29Show/hide
Query:  QLGCGLVQLLMETAYIQPPVDELGDGPVDICPAFV
        ++GC L+QLLM+TAYIQPPVD+ GDG +DICPAFV
Subjt:  QLGCGLVQLLMETAYIQPPVDELGDGPVDICPAFV

A0A5D3DS53 DNA-directed RNA polymerase 1B9.9e-4478.29Show/hide
Query:  MRGRNRSSLSSLEERVKEGRRSFVEETQPVADKDHDILRKK----------------------------EAHVKGFVFHFLSIVSILVPIIFQLGCGLVQ
        MRGRNRSSLSSLEERVKEGRRSFVEETQPVADKDHDILRKK                            EAHVKGFVFHFLSIVSILVPIIFQLGCGLVQ
Subjt:  MRGRNRSSLSSLEERVKEGRRSFVEETQPVADKDHDILRKK----------------------------EAHVKGFVFHFLSIVSILVPIIFQLGCGLVQ

Query:  LLMETAYIQPPVDELGDGPVDICPAFVLY
        LLMETAYIQPPVDELGDGPVDICPAFVLY
Subjt:  LLMETAYIQPPVDELGDGPVDICPAFVLY

V4TCR1 DNA-directed RNA polymerase1.6e-0638.3Show/hide
Query:  SSLSSLEERVKEGRRSFVEETQPVADKDHDILRK-KEAHVKGFVFHFLSIVSILVPIIFQLGCGLVQLLMETAYIQPPVDELGDGPVDICPAFV
        ++L    E V       ++E + +  +   +++K K   V+G V   + +       + ++GC L+QLLMETAYIQPPVD+LGD P DI PAFV
Subjt:  SSLSSLEERVKEGRRSFVEETQPVADKDHDILRK-KEAHVKGFVFHFLSIVSILVPIIFQLGCGLVQLLMETAYIQPPVDELGDGPVDICPAFV

SwissProt top hitse value%identityAlignment
P69242 DNA-directed RNA polymerase 3, chloroplastic7.9e-0664.71Show/hide
Query:  QLGCGLVQLLMETAYIQPPVDELGDGPVDICPAF
        +LGC L++LL ETAY+QPPVD+  D P DI PAF
Subjt:  QLGCGLVQLLMETAYIQPPVDELGDGPVDICPAF

P69243 DNA-directed RNA polymerase 3A, chloroplastic7.9e-0664.71Show/hide
Query:  QLGCGLVQLLMETAYIQPPVDELGDGPVDICPAF
        +LGC L++LL ETAY+QPPVD+  D P DI PAF
Subjt:  QLGCGLVQLLMETAYIQPPVDELGDGPVDICPAF

P92969 DNA-directed RNA polymerase 1, mitochondrial2.3e-0561.76Show/hide
Query:  QLGCGLVQLLMETAYIQPPVDELGDGPVDICPAF
        ++G  L+QLLME AYIQPP ++  DGP DI PAF
Subjt:  QLGCGLVQLLMETAYIQPPVDELGDGPVDICPAF

Q8L6J5 DNA-directed RNA polymerase 1B, mitochondrial1.1e-0767.57Show/hide
Query:  IFQLGCGLVQLLMETAYIQPPVDELGDGPVDICPAFV
        + ++GC L+Q+LMETAYIQPP D+L DGP DI PAFV
Subjt:  IFQLGCGLVQLLMETAYIQPPVDELGDGPVDICPAFV

Q93Y94 DNA-directed RNA polymerase 1, mitochondrial1.2e-0664.86Show/hide
Query:  IFQLGCGLVQLLMETAYIQPPVDELGDGPVDICPAFV
        + ++GC L+Q+LMETAYIQPP D+L D P DI PAFV
Subjt:  IFQLGCGLVQLLMETAYIQPPVDELGDGPVDICPAFV

Arabidopsis top hitse value%identityAlignment
AT1G68990.1 male gametophyte defective 31.6e-0661.76Show/hide
Query:  QLGCGLVQLLMETAYIQPPVDELGDGPVDICPAF
        ++G  L+QLLME AYIQPP ++  DGP DI PAF
Subjt:  QLGCGLVQLLMETAYIQPPVDELGDGPVDICPAF

AT1G68990.2 male gametophyte defective 31.6e-0661.76Show/hide
Query:  QLGCGLVQLLMETAYIQPPVDELGDGPVDICPAF
        ++G  L+QLLME AYIQPP ++  DGP DI PAF
Subjt:  QLGCGLVQLLMETAYIQPPVDELGDGPVDICPAF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGGGGACGAAATAGGTCGAGTTTGAGCTCGCTTGAAGAACGGGTGAAGGAAGGGAGACGTAGTTTTGTAGAAGAAACTCAGCCTGTGGCCGACAAAGATCATGACAT
ATTGAGGAAAAAAGAGGCTCATGTGAAGGGTTTTGTTTTTCATTTTCTGTCCATTGTCTCAATTCTGGTTCCTATTATCTTCCAGCTTGGATGCGGTTTGGTTCAGTTGT
TGATGGAAACAGCCTATATTCAACCTCCAGTTGATGAGTTAGGAGATGGTCCAGTTGATATTTGCCCTGCCTTTGTCCTCTATTAA
mRNA sequenceShow/hide mRNA sequence
ATGCGGGGACGAAATAGGTCGAGTTTGAGCTCGCTTGAAGAACGGGTGAAGGAAGGGAGACGTAGTTTTGTAGAAGAAACTCAGCCTGTGGCCGACAAAGATCATGACAT
ATTGAGGAAAAAAGAGGCTCATGTGAAGGGTTTTGTTTTTCATTTTCTGTCCATTGTCTCAATTCTGGTTCCTATTATCTTCCAGCTTGGATGCGGTTTGGTTCAGTTGT
TGATGGAAACAGCCTATATTCAACCTCCAGTTGATGAGTTAGGAGATGGTCCAGTTGATATTTGCCCTGCCTTTGTCCTCTATTAA
Protein sequenceShow/hide protein sequence
MRGRNRSSLSSLEERVKEGRRSFVEETQPVADKDHDILRKKEAHVKGFVFHFLSIVSILVPIIFQLGCGLVQLLMETAYIQPPVDELGDGPVDICPAFVLY