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IVF0023244 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0023244
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionProtein ROOT HAIR DEFECTIVE 3 homolog
Genome locationchr06:8161572..8162634
RNA-Seq ExpressionIVF0023244
SyntenyIVF0023244
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0005783 - endoplasmic reticulum (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0005525 - GTP binding (molecular function)
InterPro domainsIPR008803 - RHD3/Sey1
IPR030386 - GB1/RHD3-type guanine nucleotide-binding (G) domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF2301062.1 hypothetical protein GH714_019756 [Hevea brasiliensis]3.07e-1576.6Show/hide
Query:  RSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGEV-LLFDKKKYIF
        RSQTTKGIWLARC GIEPCTLVMDLEGT GRERGE    F+K+  +F
Subjt:  RSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGEV-LLFDKKKYIF

KAG7025862.1 Protein ROOT HAIR DEFECTIVE 3-like 1, partial [Cucurbita argyrosperma subsp. argyrosperma]1.98e-1589.19Show/hide
Query:  LSRSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGE
        + RSQTTKGIWLARC GIEPCTLVMDLEGT GRERGE
Subjt:  LSRSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGE

MCI27040.1 ROOT HAIR defective 3 GTP-binding family protein [Trifolium medium]3.26e-1588.57Show/hide
Query:  RSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGE
        RSQTTKGIW+ARC GIEPCT+VMDLEGT GRERGE
Subjt:  RSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGE

RRT35265.1 hypothetical protein B296_00055797 [Ensete ventricosum]3.89e-1584.21Show/hide
Query:  LSRSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGEV
        + RSQTTKGIWLA C GIEPCT+VMDLEGT GRERGEV
Subjt:  LSRSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGEV

RWW53041.1 hypothetical protein BHE74_00040500 [Ensete ventricosum]3.52e-1584.21Show/hide
Query:  LSRSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGEV
        + RSQTTKGIWLA+C GIEPCT+VMDLEGT GRERGEV
Subjt:  LSRSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGEV

TrEMBL top hitse value%identityAlignment
A0A103YNE3 Root hair defective 3 GTP-binding2.1e-1173.47Show/hide
Query:  LSRSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGE-VLLFDKKKYIF
        L RSQTTKGIW+ARCTGIEPCT+VMDLEGT GRERGE    F+K+  +F
Subjt:  LSRSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGE-VLLFDKKKYIF

A0A371EHB8 Protein ROOT HAIR DEFECTIVE 3-like 1 (Fragment)9.4e-1272Show/hide
Query:  LSRSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGEV--LLFDKKKYIF
        L+RSQTTKGIW+A+C GIEPCTLVMDLEGT GRERGEV    F+K+  +F
Subjt:  LSRSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGEV--LLFDKKKYIF

A0A6J1KDB3 Protein ROOT HAIR DEFECTIVE 3 homolog2.7e-1173.47Show/hide
Query:  LSRSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGE-VLLFDKKKYIF
        + RSQTTKGIWLARC GIEPCTLVMDLEGT GRERGE    F+K+  +F
Subjt:  LSRSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGE-VLLFDKKKYIF

A0A6J1KMA1 Protein ROOT HAIR DEFECTIVE 3 homolog2.7e-1173.47Show/hide
Query:  LSRSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGE-VLLFDKKKYIF
        + RSQTTKGIWLARC GIEPCTLVMDLEGT GRERGE    F+K+  +F
Subjt:  LSRSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGE-VLLFDKKKYIF

A0A7J7C125 Protein ROOT HAIR DEFECTIVE 3 homolog7.2e-1275.51Show/hide
Query:  LSRSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGE-VLLFDKKKYIF
        + RSQTTKGIWLARCTGIEPCTLVMDLEGT GRERGE    F+K+  +F
Subjt:  LSRSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGE-VLLFDKKKYIF

SwissProt top hitse value%identityAlignment
P93042 Protein ROOT HAIR DEFECTIVE 34.8e-1372.34Show/hide
Query:  RSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGE-VLLFDKKKYIF
        RSQTTKGIW+ARC GIEPCT+VMDLEGT GRERGE    F+K+  +F
Subjt:  RSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGE-VLLFDKKKYIF

Q0JLS6 Protein ROOT HAIR DEFECTIVE 34.5e-1168.09Show/hide
Query:  RSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGE-VLLFDKKKYIF
        RSQTTKGIW+A+   IEPCTLVMDLEGT GRERGE    F+K+  +F
Subjt:  RSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGE-VLLFDKKKYIF

Q2QMH2 Protein ROOT HAIR DEFECTIVE 3 homolog 16.3e-1366.67Show/hide
Query:  RSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGE-VLLFDKKKYIFVSII
        RSQTTKGIW+ARC G+EPCT+VMDLEGT GRERGE    F+K+  +F   I
Subjt:  RSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGE-VLLFDKKKYIFVSII

Q9FKE9 Protein ROOT HAIR DEFECTIVE 3 homolog 22.0e-1168.09Show/hide
Query:  RSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGE-VLLFDKKKYIF
        RSQTTKGIW+ARC GIEP T+ MDLEGT GRERGE    F+K+  +F
Subjt:  RSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGE-VLLFDKKKYIF

Q9SSN0 Protein ROOT HAIR DEFECTIVE 3 homolog 11.3e-1372.55Show/hide
Query:  RSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGE-VLLFDKKKYIFVSII
        RSQTTKGIWLARC GIEPCTLVMDLEGT GRERGE    F+K+  +F   I
Subjt:  RSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGE-VLLFDKKKYIFVSII

Arabidopsis top hitse value%identityAlignment
AT1G72960.1 Root hair defective 3 GTP-binding protein (RHD3)9.0e-1572.55Show/hide
Query:  RSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGE-VLLFDKKKYIFVSII
        RSQTTKGIWLARC GIEPCTLVMDLEGT GRERGE    F+K+  +F   I
Subjt:  RSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGE-VLLFDKKKYIFVSII

AT3G13870.1 Root hair defective 3 GTP-binding protein (RHD3)3.4e-1472.34Show/hide
Query:  RSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGE-VLLFDKKKYIF
        RSQTTKGIW+ARC GIEPCT+VMDLEGT GRERGE    F+K+  +F
Subjt:  RSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGE-VLLFDKKKYIF

AT3G13870.2 Root hair defective 3 GTP-binding protein (RHD3)1.3e-1371.74Show/hide
Query:  SQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGE-VLLFDKKKYIF
        SQTTKGIW+ARC GIEPCT+VMDLEGT GRERGE    F+K+  +F
Subjt:  SQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGE-VLLFDKKKYIF

AT5G45160.1 Root hair defective 3 GTP-binding protein (RHD3)1.4e-1268.09Show/hide
Query:  RSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGE-VLLFDKKKYIF
        RSQTTKGIW+ARC GIEP T+ MDLEGT GRERGE    F+K+  +F
Subjt:  RSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGE-VLLFDKKKYIF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACTTTCTAGATCGCAAACAACTAAAGGTATATGGTTGGCTAGATGCACCGGCATTGAGCCTTGTACACTTGTGATGGATTTAGAAGGAACTGGTGGAAGAGAGCG
AGGAGAGGTTTTATTATTTGACAAAAAAAAATACATATTTGTTTCTATAATTCTTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCACTTTCTAGATCGCAAACAACTAAAGGTATATGGTTGGCTAGATGCACCGGCATTGAGCCTTGTACACTTGTGATGGATTTAGAAGGAACTGGTGGAAGAGAGCG
AGGAGAGGTTTTATTATTTGACAAAAAAAAATACATATTTGTTTCTATAATTCTTTTGTAA
Protein sequenceShow/hide protein sequence
MSLSRSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGEVLLFDKKKYIFVSIILL