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IVF0023307 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0023307
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptiontRNA pseudouridine synthase
Genome locationchr08:18405126..18405345
RNA-Seq ExpressionIVF0023307
SyntenyIVF0023307
Gene Ontology termsGO:0031119 - tRNA pseudouridine synthesis (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0106029 - tRNA pseudouridine synthase activity (molecular function)
InterPro domainsIPR020094 - Pseudouridine synthase TruA/RsuA/RluB/E/F, N-terminal
IPR020103 - Pseudouridine synthase, catalytic domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3437272.1 hypothetical protein FNV43_RR20025 [Rhamnella rubrinervis]4.17e-1291.18Show/hide
Query:  KAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT
        KAQ+LKDKCLP+EGCVVVAGRTDKGVTALQQVC+
Subjt:  KAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT
TYK28521.1 tRNA pseudouridine synthase A [Cucumis melo var. makuwa]6.34e-1291.18Show/hide
Query:  KAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT
        KAQMLKDKCLPLEGC VVAGRTDKGVTAL+QVC+
Subjt:  KAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT
XP_008453520.1 PREDICTED: tRNA pseudouridine synthase A [Cucumis melo]7.83e-1291.18Show/hide
Query:  KAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT
        KAQMLKDKCLPLEGC VVAGRTDKGVTAL+QVC+
Subjt:  KAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT
XP_015881667.1 uncharacterized protein LOC107417573 [Ziziphus jujuba]5.11e-1291.18Show/hide
Query:  KAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT
        KAQ+LKDKCLPLEGC VVAGRTDKGVTALQQVC+
Subjt:  KAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT
XP_015881730.1 uncharacterized protein LOC107417627 [Ziziphus jujuba]7.87e-1291.18Show/hide
Query:  KAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT
        KAQ+LKDKCLPLEGC VVAGRTDKGVTALQQVC+
Subjt:  KAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT
TrEMBL top hitse value%identityAlignment
A0A1S3BWI6 tRNA pseudouridine synthase1.4e-0891.18Show/hide
Query:  KAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT
        KAQMLKDKCLPLEGC VVAGRTDKGVTAL+QVC+
Subjt:  KAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT
A0A5A7UXE7 tRNA pseudouridine synthase1.4e-0891.18Show/hide
Query:  KAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT
        KAQMLKDKCLPLEGC VVAGRTDKGVTAL+QVC+
Subjt:  KAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT
A0A5D3DY63 tRNA pseudouridine synthase A1.4e-0891.18Show/hide
Query:  KAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT
        KAQMLKDKCLPLEGC VVAGRTDKGVTAL+QVC+
Subjt:  KAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT
A0A6P3ZQW7 tRNA pseudouridine synthase1.4e-0891.18Show/hide
Query:  KAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT
        KAQ+LKDKCLPLEGC VVAGRTDKGVTALQQVC+
Subjt:  KAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT
A0A6P4A7G1 tRNA pseudouridine synthase1.4e-0891.18Show/hide
Query:  KAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT
        KAQ+LKDKCLPLEGC VVAGRTDKGVTALQQVC+
Subjt:  KAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G35400.1 Pseudouridine synthase family protein1.4e-0876.47Show/hide
Query:  KAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT
        KAQ+LK KC PLEG V+VAGRTDKGV+AL QVC+
Subjt:  KAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT
AT5G35400.2 Pseudouridine synthase family protein1.4e-0876.47Show/hide
Query:  KAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT
        KAQ+LK KC PLEG V+VAGRTDKGV+AL QVC+
Subjt:  KAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCT

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAACACTGATGTAAATAGGAGGATTATGTCTACTTGCATCCTTTGGCAGCTTACGAAAGCTCAAATGCTGAAAGATAAATGCTTACCATTAGAAGGATGTGTTGT
GGTTGCTGGGCGCACTGACAAAGGGGTGACTGCTCTACAACAAGTTTGCACAATTTGTTGTATGTTAGCTTTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAACACTGATGTAAATAGGAGGATTATGTCTACTTGCATCCTTTGGCAGCTTACGAAAGCTCAAATGCTGAAAGATAAATGCTTACCATTAGAAGGATGTGTTGT
GGTTGCTGGGCGCACTGACAAAGGGGTGACTGCTCTACAACAAGTTTGCACAATTTGTTGTATGTTAGCTTTCTAA
Protein sequenceShow/hide protein sequence
MENTDVNRRIMSTCILWQLTKAQMLKDKCLPLEGCVVVAGRTDKGVTALQQVCTICCMLAF