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IVF0023325 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0023325
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionReverse transcriptase
Genome locationchr06:8194370..8194858
RNA-Seq ExpressionIVF0023325
SyntenyIVF0023325
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025979.1 reverse transcriptase [Cucumis melo var. makuwa]1.73e-5384.73Show/hide
Query:  RHPLPVRPFLLPRAAAAYFSAFSLSVLHLTNTASQLRLFSSVAFSSP----SSATSSASTFVCRGPVFSRPPSRSHVTGCRRASFVRPRLPTSSRLPQRR
        RHPL VRPFLLPRAAAA+FSAFSLSVL+ T+TA +LRLFSSVAFSSP    SSATSSASTFV   PVFSRPPSRSHVTG RRASFVRPRLPTSSR P RR
Subjt:  RHPLPVRPFLLPRAAAAYFSAFSLSVLHLTNTASQLRLFSSVAFSSP----SSATSSASTFVCRGPVFSRPPSRSHVTGCRRASFVRPRLPTSSRLPQRR

Query:  SPSSRRRTSNSRGFPILQVNPRTLIQTDPIR
        SPSSRR+TSNSRGFPILQ +PRTLIQTDPIR
Subjt:  SPSSRRRTSNSRGFPILQVNPRTLIQTDPIR

KAA0033008.1 hypothetical protein E6C27_scaffold269G001040 [Cucumis melo var. makuwa]4.18e-3068.64Show/hide
Query:  SASTFVCRGPVFSRPPSRSHVTGCRRASFVRPRLPTSSRLPQRRSPSSRRRTSNSRGFPILQVNPRTLIQTDPIRESEPSR---------KPQAESSREP
        SASTFV  GPV  R PS SHVTG RRASFVRP LPTSSRL  RRSPSSRRRTSN RG PILQV+PR LIQT+P RES+P+R         +P+ E SREP
Subjt:  SASTFVCRGPVFSRPPSRSHVTGCRRASFVRPRLPTSSRLPQRRSPSSRRRTSNSRGFPILQVNPRTLIQTDPIRESEPSR---------KPQAESSREP

Query:  SQAASRATSRA-ASRVKP
        SQA  RA SRA +SRV+P
Subjt:  SQAASRATSRA-ASRVKP

KAA0054780.1 pol protein [Cucumis melo var. makuwa]8.60e-3784.21Show/hide
Query:  RLFSSVAFSSP----SSATSSASTFVCRGPVFSRPPSRSHVTGCRRASFVRPRLPTSSRLPQRRSPSSRRRTSNSRGFPILQVNPRTLIQTDPIR
        R F+SVAF SP    SSATSSASTF+ RGPVFSRP SRSHVTGCRRASF+RPRLPTSSR P RRSPSSRRRTSNSRGFPILQ +PRTLIQTDPIR
Subjt:  RLFSSVAFSSP----SSATSSASTFVCRGPVFSRPPSRSHVTGCRRASFVRPRLPTSSRLPQRRSPSSRRRTSNSRGFPILQVNPRTLIQTDPIR

KAA0056044.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.07e-5484.62Show/hide
Query:  RHPLPVRPFLLPRAAAAYFSAFSLSVLHLTNTASQLRLFSSVAFSSP----SSATSSASTFVCRGPVFSRPPSRSHVTGCRRASFVRPRLPTSSRLPQRR
        RHPLPVRPFLL RAAAA+FSAFSLSVLH TNTA +L LF SVAFSSP    SSATSSASTFV  GP+FSRPPSRSHVTGCRRASFVRPRLPTSSRLP RR
Subjt:  RHPLPVRPFLLPRAAAAYFSAFSLSVLHLTNTASQLRLFSSVAFSSP----SSATSSASTFVCRGPVFSRPPSRSHVTGCRRASFVRPRLPTSSRLPQRR

Query:  SPSSRRRTSNSRGFPILQVNPRTLIQTDPI
        SPSSRRRT N R FPILQ +PRTLIQTDPI
Subjt:  SPSSRRRTSNSRGFPILQVNPRTLIQTDPI

TYK20431.1 hypothetical protein E5676_scaffold604G00190 [Cucumis melo var. makuwa]5.05e-0559.38Show/hide
Query:  LPVRPF--LLPRAAAAYFSAFSLSVLHLTNTASQLRLFSSVAFSSPSSATSSASTFVCRGPVFS
        LP+ PF  LLPRAAAA  SAFSLSVLH T  A +L LFSSVA  SPSS  S+++    R P  S
Subjt:  LPVRPF--LLPRAAAAYFSAFSLSVLHLTNTASQLRLFSSVAFSSPSSATSSASTFVCRGPVFS

TrEMBL top hitse value%identityAlignment
A0A5A7SL46 Reverse transcriptase4.9e-4581.16Show/hide
Query:  RHPLPVRPFLLPRAAAAYFSAFSLSVLHLTNTASQLRLFSSVAFS----SPSSATSSASTFVCRGPVFSRPPSRSHVTGCRRASFVRPRLPTSSRLPQRR
        RHPL VRPFLLPRAAAA+FSAFSLSVL+ T+TA +LRLFSSVAFS    SPSSATSSASTFV   PVFSRPPSRSHVTG RRASFVRPRLPTSSR P RR
Subjt:  RHPLPVRPFLLPRAAAAYFSAFSLSVLHLTNTASQLRLFSSVAFS----SPSSATSSASTFVCRGPVFSRPPSRSHVTGCRRASFVRPRLPTSSRLPQRR

Query:  SPSSRRRTSNSRGFPILQVNPRTLIQTDPIRESEPSRK
        SPSSRR+TSNSRGFPILQ +PRTLIQTDPIR  + + K
Subjt:  SPSSRRRTSNSRGFPILQVNPRTLIQTDPIRESEPSRK

A0A5A7SR34 Uncharacterized protein1.3e-2460.71Show/hide
Query:  NTASQLRLFSSVAFSSPSSATSSASTFVCRGPVFSRPPSRSHVTGCRRASFVRPRLPTSSRLPQRRSPSSRRRTSNSRGFPILQVNPRTLIQTDPIRESE
        NT   +     ++ S  S    SASTFV  GPV  R PS SHVTG RRASFVRP LPTSSRL  RRSPSSRRRTSN RG PILQV+PR LIQT+P RES+
Subjt:  NTASQLRLFSSVAFSSPSSATSSASTFVCRGPVFSRPPSRSHVTGCRRASFVRPRLPTSSRLPQRRSPSSRRRTSNSRGFPILQVNPRTLIQTDPIRESE

Query:  PSR---------KPQAESSREPSQAASRATSRA-ASRVKP
        P+R         +P+ E SREPSQA  RA SRA +SRV+P
Subjt:  PSR---------KPQAESSREPSQAASRATSRA-ASRVKP

A0A5A7UHL9 Pol protein1.2e-3084.21Show/hide
Query:  RLFSSVAF----SSPSSATSSASTFVCRGPVFSRPPSRSHVTGCRRASFVRPRLPTSSRLPQRRSPSSRRRTSNSRGFPILQVNPRTLIQTDPIR
        R F+SVAF     SPSSATSSASTF+ RGPVFSRP SRSHVTGCRRASF+RPRLPTSSR P RRSPSSRRRTSNSRGFPILQ +PRTLIQTDPIR
Subjt:  RLFSSVAF----SSPSSATSSASTFVCRGPVFSRPPSRSHVTGCRRASFVRPRLPTSSRLPQRRSPSSRRRTSNSRGFPILQVNPRTLIQTDPIR

A0A5A7ULH7 Reverse transcriptase2.0e-4684.62Show/hide
Query:  RHPLPVRPFLLPRAAAAYFSAFSLSVLHLTNTASQLRLFSSVAFS----SPSSATSSASTFVCRGPVFSRPPSRSHVTGCRRASFVRPRLPTSSRLPQRR
        RHPLPVRPFLL RAAAA+FSAFSLSVLH TNTA +L LF SVAFS    SPSSATSSASTFV  GP+FSRPPSRSHVTGCRRASFVRPRLPTSSRLP RR
Subjt:  RHPLPVRPFLLPRAAAAYFSAFSLSVLHLTNTASQLRLFSSVAFS----SPSSATSSASTFVCRGPVFSRPPSRSHVTGCRRASFVRPRLPTSSRLPQRR

Query:  SPSSRRRTSNSRGFPILQVNPRTLIQTDPI
        SPSSRRRT N R FPILQ +PRTLIQTDPI
Subjt:  SPSSRRRTSNSRGFPILQVNPRTLIQTDPI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGACACCCCCTCCCTGTCCGTCCATTTCTTCTTCCTCGCGCCGCCGCCGCCTATTTCAGTGCCTTCTCCCTCTCCGTTCTTCACCTGACGAATACCGCCAGTCAACT
TCGTCTCTTCTCCTCCGTCGCGTTTTCGTCTCCATCGTCGGCAACTTCTTCAGCTTCAACGTTCGTCTGCCGCGGTCCCGTCTTTTCCCGACCTCCCTCTCGGTCTCACG
TAACCGGATGCCGTCGTGCGTCCTTCGTCCGACCACGTCTACCGACGTCCAGCCGCCTTCCGCAGCGTCGTTCGCCGAGCAGCCGACGGCGAACCTCTAACAGTCGCGGA
TTTCCCATCTTGCAAGTCAACCCGAGAACCCTCATCCAAACCGACCCGATTCGTGAATCTGAGCCGAGCCGCAAGCCGCAAGCCGAGTCAAGTCGCGAGCCGAGTCAAGC
TGCAAGCCGAGCGACGAGCCGAGCCGCGAGCCGAGTCAAGCCGAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCGACACCCCCTCCCTGTCCGTCCATTTCTTCTTCCTCGCGCCGCCGCCGCCTATTTCAGTGCCTTCTCCCTCTCCGTTCTTCACCTGACGAATACCGCCAGTCAACT
TCGTCTCTTCTCCTCCGTCGCGTTTTCGTCTCCATCGTCGGCAACTTCTTCAGCTTCAACGTTCGTCTGCCGCGGTCCCGTCTTTTCCCGACCTCCCTCTCGGTCTCACG
TAACCGGATGCCGTCGTGCGTCCTTCGTCCGACCACGTCTACCGACGTCCAGCCGCCTTCCGCAGCGTCGTTCGCCGAGCAGCCGACGGCGAACCTCTAACAGTCGCGGA
TTTCCCATCTTGCAAGTCAACCCGAGAACCCTCATCCAAACCGACCCGATTCGTGAATCTGAGCCGAGCCGCAAGCCGCAAGCCGAGTCAAGTCGCGAGCCGAGTCAAGC
TGCAAGCCGAGCGACGAGCCGAGCCGCGAGCCGAGTCAAGCCGAGTTGA
Protein sequenceShow/hide protein sequence
MRHPLPVRPFLLPRAAAAYFSAFSLSVLHLTNTASQLRLFSSVAFSSPSSATSSASTFVCRGPVFSRPPSRSHVTGCRRASFVRPRLPTSSRLPQRRSPSSRRRTSNSRG
FPILQVNPRTLIQTDPIRESEPSRKPQAESSREPSQAASRATSRAASRVKPS