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IVF0023336 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0023336
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon gag protein
Genome locationchr06:16910090..16910548
RNA-Seq ExpressionIVF0023336
SyntenyIVF0023336
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025375.1 zinc finger Y-chromosomal protein 1-like isoform X1 [Cucumis melo var. makuwa]8.52e-7684.21Show/hide
Query:  MLQSRRLSSQICCSQKDFCLKYIVAEKVVVLYILQSRMSSSQICCRREGRPLKYVAAEKIVVLKYVAAEKIIASNILQPRRSSSQICCSPKDFYLKYIVA
        MLQ RR S QICCSQKDFCLKYIVAEKVVV YILQ RMSSSQIC RR G PLKYVAAEKIVVLKYVAAEKI+ SN+LQPRRSS +ICCS KDF LKYIVA
Subjt:  MLQSRRLSSQICCSQKDFCLKYIVAEKVVVLYILQSRMSSSQICCRREGRPLKYVAAEKIVVLKYVAAEKIIASNILQPRRSSSQICCSPKDFYLKYIVA

Query:  EKVVVSYMLQLRMSSSLICCCREGRPLKYVAAKKIVVLKYVAAEKIIVSNML
        EKVVVSY+LQ RMSSS IC  R GRPLKYVAA+KIVVLKYV AEKI+VSNML
Subjt:  EKVVVSYMLQLRMSSSLICCCREGRPLKYVAAKKIVVLKYVAAEKIIVSNML

KAA0032450.1 hypothetical protein E6C27_scaffold999G00100 [Cucumis melo var. makuwa]1.79e-7885.53Show/hide
Query:  MLQSRRLSSQICCSQKDFCLKYIVAEKVVVLYILQSRMSSSQICCRREGRPLKYVAAEKIVVLKYVAAEKIIASNILQPRRSSSQICCSPKDFYLKYIVA
        MLQ RR SSQICCSQKDFC +YI+AEKVVV YILQ RMSSSQIC RRE RPLKYVAAEKI VLKYVAAEKII SN+LQPRRSSSQICCS K F LKYIV 
Subjt:  MLQSRRLSSQICCSQKDFCLKYIVAEKVVVLYILQSRMSSSQICCRREGRPLKYVAAEKIVVLKYVAAEKIIASNILQPRRSSSQICCSPKDFYLKYIVA

Query:  EKVVVSYMLQLRMSSSLICCCREGRPLKYVAAKKIVVLKYVAAEKIIVSNML
        EKVVVSYMLQ RMS S ICCCREGRPLKYVAAKKI+V KYVAA+KIIVSNML
Subjt:  EKVVVSYMLQLRMSSSLICCCREGRPLKYVAAKKIVVLKYVAAEKIIVSNML

KAA0051981.1 hypothetical protein E6C27_scaffold60G004640 [Cucumis melo var. makuwa]2.34e-7875Show/hide
Query:  MLQSRRLSSQICCSQKDFCLKYIVAEKVVVLYILQSRMSSSQICCRREGRPLKYVAAEKIVVLKYVAAEKIIASNILQPRRSSSQICCSPKDFYLKYIVA
        MLQ RR SSQICCSQKDFCLKYIVAEKVVV YILQ RMSSSQICCRREGRPLKYVA EKI+VLKYVAAEKII SN+LQPRRSSSQICCS KDF LKYIVA
Subjt:  MLQSRRLSSQICCSQKDFCLKYIVAEKVVVLYILQSRMSSSQICCRREGRPLKYVAAEKIVVLKYVAAEKIIASNILQPRRSSSQICCSPKDFYLKYIVA

Query:  EKVVVSYMLQLR--------------------------------MSSSLICCCREGRPLKYVAAKKIVVLKYVAAEKIIVSNML
        EKVVVSYMLQ R                                MSSS ICC REGRPLKY+AAKKIVVLKYVAAEKIIVSNML
Subjt:  EKVVVSYMLQLR--------------------------------MSSSLICCCREGRPLKYVAAKKIVVLKYVAAEKIIVSNML

KAA0064215.1 hypothetical protein E6C27_scaffold548G001630 [Cucumis melo var. makuwa]2.12e-7473.91Show/hide
Query:  MLQSRRLSSQICCSQKDFCLKYIVAEKVVVLYILQSRMSSSQICCRREGRPLKYVAAEKIVVLKYVAAEKIIASNILQPRRSSSQICCSPKDFYLKYIVA
        MLQ RR SSQICCSQKDFCLKYIVAEKV V YILQ R+SSSQICCRREG PLKYVA EKI VLKYVAAEKII SN+LQPRRSSSQICCS KDF LKYIVA
Subjt:  MLQSRRLSSQICCSQKDFCLKYIVAEKVVVLYILQSRMSSSQICCRREGRPLKYVAAEKIVVLKYVAAEKIIASNILQPRRSSSQICCSPKDFYLKYIVA

Query:  EKVVVSYMLQLR--------------------------------MSSSLICCCREGRPLKYVAAKKIVVLKYVAAEKIIVSNML
        EKVVVSYMLQ R                                MSSS ICC REGRPLKYVAAKKIVVLKYVAAEKIIVSNML
Subjt:  EKVVVSYMLQLR--------------------------------MSSSLICCCREGRPLKYVAAKKIVVLKYVAAEKIIVSNML

TYK04576.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.21e-7475Show/hide
Query:  MLQSRRLSSQICCSQKDFCLKYIVAEKVVVLYILQSRMSSSQICCRREGRPLKYVAAEKIVVLKYVAAEKIIASNILQPRRSSSQICCSPKDFYLKYIVA
        MLQ RR SSQICCSQKDFCLKYIVAEKVVV YILQ RMSSSQICCRREGRPLKYVA EKI+VLKYVAAEKII SN+LQPRRSSSQICCS KDF LKYIVA
Subjt:  MLQSRRLSSQICCSQKDFCLKYIVAEKVVVLYILQSRMSSSQICCRREGRPLKYVAAEKIVVLKYVAAEKIIASNILQPRRSSSQICCSPKDFYLKYIVA

Query:  EKVVVSYMLQLR--------------------------------MSSSLICCCREGRPLKYVAAKKIVVLKYVAAEKIIVSNML
        EKVVVSYMLQ R                                MSSS ICC REGRPLKY+AAKKIVVLKYVAAEKIIVSNML
Subjt:  EKVVVSYMLQLR--------------------------------MSSSLICCCREGRPLKYVAAKKIVVLKYVAAEKIIVSNML

TrEMBL top hitse value%identityAlignment
A0A5A7SNS6 Uncharacterized protein6.0e-6185.53Show/hide
Query:  MLQSRRLSSQICCSQKDFCLKYIVAEKVVVLYILQSRMSSSQICCRREGRPLKYVAAEKIVVLKYVAAEKIIASNILQPRRSSSQICCSPKDFYLKYIVA
        MLQ RR SSQICCSQKDFC +YI+AEKVVV YILQ RMSSSQIC RRE RPLKYVAAEKI VLKYVAAEKII SN+LQPRRSSSQICCS K F LKYIV 
Subjt:  MLQSRRLSSQICCSQKDFCLKYIVAEKVVVLYILQSRMSSSQICCRREGRPLKYVAAEKIVVLKYVAAEKIIASNILQPRRSSSQICCSPKDFYLKYIVA

Query:  EKVVVSYMLQLRMSSSLICCCREGRPLKYVAAKKIVVLKYVAAEKIIVSNML
        EKVVVSYMLQ RMS S ICCCREGRPLKYVAAKKI+V KYVAA+KIIVSNML
Subjt:  EKVVVSYMLQLRMSSSLICCCREGRPLKYVAAKKIVVLKYVAAEKIIVSNML

A0A5A7UEK9 Uncharacterized protein2.1e-6175Show/hide
Query:  MLQSRRLSSQICCSQKDFCLKYIVAEKVVVLYILQSRMSSSQICCRREGRPLKYVAAEKIVVLKYVAAEKIIASNILQPRRSSSQICCSPKDFYLKYIVA
        MLQ RR SSQICCSQKDFCLKYIVAEKVVV YILQ RMSSSQICCRREGRPLKYVA EKI+VLKYVAAEKII SN+LQPRRSSSQICCS KDF LKYIVA
Subjt:  MLQSRRLSSQICCSQKDFCLKYIVAEKVVVLYILQSRMSSSQICCRREGRPLKYVAAEKIVVLKYVAAEKIIASNILQPRRSSSQICCSPKDFYLKYIVA

Query:  EKVVVSYMLQ--------------------------------LRMSSSLICCCREGRPLKYVAAKKIVVLKYVAAEKIIVSNML
        EKVVVSYMLQ                                 RMSSS ICC REGRPLKY+AAKKIVVLKYVAAEKIIVSNML
Subjt:  EKVVVSYMLQ--------------------------------LRMSSSLICCCREGRPLKYVAAKKIVVLKYVAAEKIIVSNML

A0A5A7VE92 Uncharacterized protein3.3e-5973.91Show/hide
Query:  MLQSRRLSSQICCSQKDFCLKYIVAEKVVVLYILQSRMSSSQICCRREGRPLKYVAAEKIVVLKYVAAEKIIASNILQPRRSSSQICCSPKDFYLKYIVA
        MLQ RR SSQICCSQKDFCLKYIVAEKV V YILQ R+SSSQICCRREG PLKYVA EKI VLKYVAAEKII SN+LQPRRSSSQICCS KDF LKYIVA
Subjt:  MLQSRRLSSQICCSQKDFCLKYIVAEKVVVLYILQSRMSSSQICCRREGRPLKYVAAEKIVVLKYVAAEKIIASNILQPRRSSSQICCSPKDFYLKYIVA

Query:  EKVVV--------------------------------SYMLQLRMSSSLICCCREGRPLKYVAAKKIVVLKYVAAEKIIVSNML
        EKVVV                                SYMLQ RMSSS ICC REGRPLKYVAAKKIVVLKYVAAEKIIVSNML
Subjt:  EKVVV--------------------------------SYMLQLRMSSSLICCCREGRPLKYVAAKKIVVLKYVAAEKIIVSNML

A0A5D3C2C8 Retrotransposon gag protein2.1e-6175Show/hide
Query:  MLQSRRLSSQICCSQKDFCLKYIVAEKVVVLYILQSRMSSSQICCRREGRPLKYVAAEKIVVLKYVAAEKIIASNILQPRRSSSQICCSPKDFYLKYIVA
        MLQ RR SSQICCSQKDFCLKYIVAEKVVV YILQ RMSSSQICCRREGRPLKYVA EKI+VLKYVAAEKII SN+LQPRRSSSQICCS KDF LKYIVA
Subjt:  MLQSRRLSSQICCSQKDFCLKYIVAEKVVVLYILQSRMSSSQICCRREGRPLKYVAAEKIVVLKYVAAEKIIASNILQPRRSSSQICCSPKDFYLKYIVA

Query:  EKVVVSYMLQ--------------------------------LRMSSSLICCCREGRPLKYVAAKKIVVLKYVAAEKIIVSNML
        EKVVVSYMLQ                                 RMSSS ICC REGRPLKY+AAKKIVVLKYVAAEKIIVSNML
Subjt:  EKVVVSYMLQ--------------------------------LRMSSSLICCCREGRPLKYVAAKKIVVLKYVAAEKIIVSNML

A0A5D3D4V9 Uncharacterized protein3.3e-5973.91Show/hide
Query:  MLQSRRLSSQICCSQKDFCLKYIVAEKVVVLYILQSRMSSSQICCRREGRPLKYVAAEKIVVLKYVAAEKIIASNILQPRRSSSQICCSPKDFYLKYIVA
        MLQ RR SSQICCSQKDFCLKYIVAEKV V YILQ R+SSSQICCRREG PLKYVA EKI VLKYVAAEKII SN+LQPRRSSSQICCS KDF LKYIVA
Subjt:  MLQSRRLSSQICCSQKDFCLKYIVAEKVVVLYILQSRMSSSQICCRREGRPLKYVAAEKIVVLKYVAAEKIIASNILQPRRSSSQICCSPKDFYLKYIVA

Query:  EKVVV--------------------------------SYMLQLRMSSSLICCCREGRPLKYVAAKKIVVLKYVAAEKIIVSNML
        EKVVV                                SYMLQ RMSSS ICC REGRPLKYVAAKKIVVLKYVAAEKIIVSNML
Subjt:  EKVVV--------------------------------SYMLQLRMSSSLICCCREGRPLKYVAAKKIVVLKYVAAEKIIVSNML

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTACAATCGAGAAGATTGTCGTCTCAAATATGTTGCAGCCAAAAAGATTTTTGTCTCAAGTATATTGTAGCCGAGAAAGTCGTTGTCTTATATATATTGCAGTCGAG
GATGTCGTCGTCTCAAATATGTTGCCGTCGAGAAGGTCGTCCCCTCAAATATGTTGCAGCTGAGAAGATTGTCGTCCTTAAATATGTTGCAGCAGAGAAGATCATCGCCT
CAAATATATTACAACCGAGAAGATCGTCGTCTCAAATATGTTGCAGCCCAAAAGATTTTTATCTCAAGTATATTGTAGCCGAGAAAGTCGTCGTCTCATATATGTTGCAG
CTGAGGATGTCGTCGTCTCTAATATGTTGCTGTCGAGAAGGTCGTCCCCTCAAATATGTTGCAGCTAAGAAGATCGTCGTTCTTAAATATGTGGCAGCAGAGAAGATCAT
CGTCTCAAATATGTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTACAATCGAGAAGATTGTCGTCTCAAATATGTTGCAGCCAAAAAGATTTTTGTCTCAAGTATATTGTAGCCGAGAAAGTCGTTGTCTTATATATATTGCAGTCGAG
GATGTCGTCGTCTCAAATATGTTGCCGTCGAGAAGGTCGTCCCCTCAAATATGTTGCAGCTGAGAAGATTGTCGTCCTTAAATATGTTGCAGCAGAGAAGATCATCGCCT
CAAATATATTACAACCGAGAAGATCGTCGTCTCAAATATGTTGCAGCCCAAAAGATTTTTATCTCAAGTATATTGTAGCCGAGAAAGTCGTCGTCTCATATATGTTGCAG
CTGAGGATGTCGTCGTCTCTAATATGTTGCTGTCGAGAAGGTCGTCCCCTCAAATATGTTGCAGCTAAGAAGATCGTCGTTCTTAAATATGTGGCAGCAGAGAAGATCAT
CGTCTCAAATATGTTGTAG
Protein sequenceShow/hide protein sequence
MLQSRRLSSQICCSQKDFCLKYIVAEKVVVLYILQSRMSSSQICCRREGRPLKYVAAEKIVVLKYVAAEKIIASNILQPRRSSSQICCSPKDFYLKYIVAEKVVVSYMLQ
LRMSSSLICCCREGRPLKYVAAKKIVVLKYVAAEKIIVSNML