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IVF0023358 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0023358
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationchr01:26884268..26885256
RNA-Seq ExpressionIVF0023358
SyntenyIVF0023358
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059628.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]1.15e-2258.06Show/hide
Query:  VTFTMLIDTLCKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSARDLFLN---------TISCTIVVDMLCKDEKYRECLDLF
        VTF++LIDTLCKEGK+IEA+KL EVMIQRGI PD   Y+SLMEGFCMV DLNSAR+LF++          IS T++++  CK  K  E + L+
Subjt:  VTFTMLIDTLCKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSARDLFLN---------TISCTIVVDMLCKDEKYRECLDLF

TYK26160.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]5.20e-5349.09Show/hide
Query:  MVTFTMLIDTLCKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSARDLFL----------------------------------------
        MVTFTMLIDTLCKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSARDLFL                                        
Subjt:  MVTFTMLIDTLCKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSARDLFL----------------------------------------

Query:  -----------------------------------------------------------------------NTISCTIVVDMLCKDEKYRECLDLFPRFP
                                                                               +TISCTIVVDMLCKDEKYRECLDLFPRFP
Subjt:  -----------------------------------------------------------------------NTISCTIVVDMLCKDEKYRECLDLFPRFP

Query:  VQKHQIDIECSFESPLNFQA
        VQKHQIDIECSFESPLNFQA
Subjt:  VQKHQIDIECSFESPLNFQA

XP_008451225.1 PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis melo]1.15e-2258.06Show/hide
Query:  VTFTMLIDTLCKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSARDLFLN---------TISCTIVVDMLCKDEKYRECLDLF
        VTF++LIDTLCKEGK+IEA+KL EVMIQRGI PD   Y+SLMEGFCMV DLNSAR+LF++          IS T++++  CK  K  E + L+
Subjt:  VTFTMLIDTLCKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSARDLFLN---------TISCTIVVDMLCKDEKYRECLDLF

XP_011659273.2 pentatricopeptide repeat-containing protein At3g22470, mitochondrial [Cucumis sativus]2.58e-2358.51Show/hide
Query:  MVTFTMLIDTLCKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSARDLFLNT---------ISCTIVVDMLCKDEKYRECLDLF
        MVTF++LIDTLCKEGK+ EA+KLLEVMIQRGI P+  TYNSL++GFCMV DLNSAR+LFL+          IS T +++  CK  K +E ++L+
Subjt:  MVTFTMLIDTLCKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSARDLFLNT---------ISCTIVVDMLCKDEKYRECLDLF

XP_016901045.1 PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis melo]1.44e-3536.74Show/hide
Query:  MVTFTMLIDTLCKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSA---------------------------------------------
        MVTFTMLIDTL KEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMV++  +                                              
Subjt:  MVTFTMLIDTLCKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSA---------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------RDLFLNTISCTIVVDMLCKDEKYRECLDLFPRFPVQKHQIDIECSFESPLNFQA
                  RD+ L+TIS TIVVDMLCKDEKYRECLDLFPRF VQKHQIDIECSFESPLNFQA
Subjt:  ----------RDLFLNTISCTIVVDMLCKDEKYRECLDLFPRFPVQKHQIDIECSFESPLNFQA

TrEMBL top hitse value%identityAlignment
A0A1S4DYL6 pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like3.1e-1958.06Show/hide
Query:  VTFTMLIDTLCKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSARDLFL---------NTISCTIVVDMLCKDEKYRECLDLF
        VTF++LIDTLCKEGK+IEA+KL EVMIQRGI PD   Y+SLMEGFCMV DLNSAR+LF+         + IS T++++  CK  K  E + L+
Subjt:  VTFTMLIDTLCKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSARDLFL---------NTISCTIVVDMLCKDEKYRECLDLF

A0A1S4DZA2 pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like1.7e-2836.74Show/hide
Query:  MVTFTMLIDTLCKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNS----------------------------------------------
        MVTFTMLIDTL KEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMV++  +                                              
Subjt:  MVTFTMLIDTLCKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNS----------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ---------ARDLFLNTISCTIVVDMLCKDEKYRECLDLFPRFPVQKHQIDIECSFESPLNFQA
                  RD+ L+TIS TIVVDMLCKDEKYRECLDLFPRF VQKHQIDIECSFESPLNFQA
Subjt:  ---------ARDLFLNTISCTIVVDMLCKDEKYRECLDLFPRFPVQKHQIDIECSFESPLNFQA

A0A5A7UUW8 Pentatricopeptide repeat-containing protein3.4e-1854.84Show/hide
Query:  VTFTMLIDTLCKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSARDLFL---------NTISCTIVVDMLCKDEKYRECLDLF
        VTF++LIDTLCKEGK+IEA+KLLE+MI+ GI P+  TYNSL++GFCMV DLNSAR+LF+         + IS T++++  CK  K  E + L+
Subjt:  VTFTMLIDTLCKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSARDLFL---------NTISCTIVVDMLCKDEKYRECLDLF

A0A5D3C8J0 Pentatricopeptide repeat-containing protein3.1e-1958.06Show/hide
Query:  VTFTMLIDTLCKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSARDLFL---------NTISCTIVVDMLCKDEKYRECLDLF
        VTF++LIDTLCKEGK+IEA+KL EVMIQRGI PD   Y+SLMEGFCMV DLNSAR+LF+         + IS T++++  CK  K  E + L+
Subjt:  VTFTMLIDTLCKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSARDLFL---------NTISCTIVVDMLCKDEKYRECLDLF

A0A5D3DSE0 Pentatricopeptide repeat-containing protein1.7e-4149.09Show/hide
Query:  MVTFTMLIDTLCKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSARDLF-----------------------------------------
        MVTFTMLIDTLCKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSARDLF                                         
Subjt:  MVTFTMLIDTLCKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSARDLF-----------------------------------------

Query:  ----------------------------------------------------------------------LNTISCTIVVDMLCKDEKYRECLDLFPRFP
                                                                              L+TISCTIVVDMLCKDEKYRECLDLFPRFP
Subjt:  ----------------------------------------------------------------------LNTISCTIVVDMLCKDEKYRECLDLFPRFP

Query:  VQKHQIDIECSFESPLNFQA
        VQKHQIDIECSFESPLNFQA
Subjt:  VQKHQIDIECSFESPLNFQA

SwissProt top hitse value%identityAlignment
Q9CAN5 Pentatricopeptide repeat-containing protein At1g63080, mitochondrial2.5e-1344.68Show/hide
Query:  MVTFTMLIDTLCKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSARDLFLNTISCTIVVDML---------CKDEKYRECLDLF
        +VTF  LID   KEGKLIEA+KL + MIQR I P+  TYNSL+ GFCM D L+ A+ +F   +S   + D++         CK +K  + ++LF
Subjt:  MVTFTMLIDTLCKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSARDLFLNTISCTIVVDML---------CKDEKYRECLDLF

Q9LQ14 Pentatricopeptide repeat-containing protein At1g62930, chloroplastic2.5e-1342.55Show/hide
Query:  MVTFTMLIDTLCKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSA---------RDLFLNTISCTIVVDMLCKDEKYRECLDLF
        +VTF+ LID   KEGKL+EA+KL + MI+R I PD  TY+SL+ GFCM D L+ A         +D F N ++   ++   CK ++  E ++LF
Subjt:  MVTFTMLIDTLCKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSA---------RDLFLNTISCTIVVDMLCKDEKYRECLDLF

Q9LQ16 Pentatricopeptide repeat-containing protein At1g629101.9e-1342.55Show/hide
Query:  MVTFTMLIDTLCKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSA---------RDLFLNTISCTIVVDMLCKDEKYRECLDLF
        +VTF+ LID   KEGKL+EA+KL + MI+R I PD  TY+SL+ GFCM D L+ A         +D F N ++ + ++   CK ++  E ++LF
Subjt:  MVTFTMLIDTLCKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSA---------RDLFLNTISCTIVVDMLCKDEKYRECLDLF

Q9SH26 Pentatricopeptide repeat-containing protein At1g634004.2e-1342.55Show/hide
Query:  MVTFTMLIDTLCKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSA---------RDLFLNTISCTIVVDMLCKDEKYRECLDLF
        +VTF  LID   KEGKL+EA+KL + MI+R I PD  TY+SL+ GFCM D L+ A         +D F N ++   +++  CK ++  E ++LF
Subjt:  MVTFTMLIDTLCKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSA---------RDLFLNTISCTIVVDMLCKDEKYRECLDLF

Q9SH60 Pentatricopeptide repeat-containing protein At1g641001.1e-1337.14Show/hide
Query:  MVTFTMLIDTLCKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSARDLFL---------NTISCTIVVDMLCKDEKYRECLDLFPRFPVQ
        +VTF  +ID  C+  ++ E  +LL  + +RG+  ++ TYN+L+ GFC VD+LN+A+DLF          +TI+C I++   C++EK  E L+LF    + 
Subjt:  MVTFTMLIDTLCKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSARDLFL---------NTISCTIVVDMLCKDEKYRECLDLFPRFPVQ

Query:  KHQID
        K  +D
Subjt:  KHQID

Arabidopsis top hitse value%identityAlignment
AT1G62910.1 Pentatricopeptide repeat (PPR) superfamily protein1.3e-1442.55Show/hide
Query:  MVTFTMLIDTLCKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSA---------RDLFLNTISCTIVVDMLCKDEKYRECLDLF
        +VTF+ LID   KEGKL+EA+KL + MI+R I PD  TY+SL+ GFCM D L+ A         +D F N ++ + ++   CK ++  E ++LF
Subjt:  MVTFTMLIDTLCKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSA---------RDLFLNTISCTIVVDMLCKDEKYRECLDLF

AT1G62930.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.8e-1442.55Show/hide
Query:  MVTFTMLIDTLCKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSA---------RDLFLNTISCTIVVDMLCKDEKYRECLDLF
        +VTF+ LID   KEGKL+EA+KL + MI+R I PD  TY+SL+ GFCM D L+ A         +D F N ++   ++   CK ++  E ++LF
Subjt:  MVTFTMLIDTLCKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSA---------RDLFLNTISCTIVVDMLCKDEKYRECLDLF

AT1G63080.1 Pentatricopeptide repeat (PPR) superfamily protein1.8e-1444.68Show/hide
Query:  MVTFTMLIDTLCKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSARDLFLNTISCTIVVDML---------CKDEKYRECLDLF
        +VTF  LID   KEGKLIEA+KL + MIQR I P+  TYNSL+ GFCM D L+ A+ +F   +S   + D++         CK +K  + ++LF
Subjt:  MVTFTMLIDTLCKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSARDLFLNTISCTIVVDML---------CKDEKYRECLDLF

AT1G64100.1 pentatricopeptide (PPR) repeat-containing protein7.9e-1537.14Show/hide
Query:  MVTFTMLIDTLCKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSARDLFL---------NTISCTIVVDMLCKDEKYRECLDLFPRFPVQ
        +VTF  +ID  C+  ++ E  +LL  + +RG+  ++ TYN+L+ GFC VD+LN+A+DLF          +TI+C I++   C++EK  E L+LF    + 
Subjt:  MVTFTMLIDTLCKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSARDLFL---------NTISCTIVVDMLCKDEKYRECLDLFPRFPVQ

Query:  KHQID
        K  +D
Subjt:  KHQID

AT1G64100.2 pentatricopeptide (PPR) repeat-containing protein7.9e-1537.14Show/hide
Query:  MVTFTMLIDTLCKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSARDLFL---------NTISCTIVVDMLCKDEKYRECLDLFPRFPVQ
        +VTF  +ID  C+  ++ E  +LL  + +RG+  ++ TYN+L+ GFC VD+LN+A+DLF          +TI+C I++   C++EK  E L+LF    + 
Subjt:  MVTFTMLIDTLCKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSARDLFL---------NTISCTIVVDMLCKDEKYRECLDLFPRFPVQ

Query:  KHQID
        K  +D
Subjt:  KHQID


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCACATTTACTATGTTGATTGATACACTTTGCAAGGAGGGAAAGCTTATCGAGGCTCAAAAGTTGCTTGAGGTCATGATTCAAAGAGGTATCTTTCCTGATTCGTG
TACTTATAATTCACTGATGGAGGGATTCTGTATGGTTGATGATTTGAATAGTGCCAGAGATCTGTTCCTTAATACTATCAGTTGCACCATAGTCGTTGACATGCTCTGCA
AAGATGAAAAATATCGAGAATGTCTAGACTTGTTTCCAAGATTTCCGGTCCAAAAGCATCAGATTGATATTGAATGTTCTTTTGAAAGCCCATTGAATTTCCAAGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTCACATTTACTATGTTGATTGATACACTTTGCAAGGAGGGAAAGCTTATCGAGGCTCAAAAGTTGCTTGAGGTCATGATTCAAAGAGGTATCTTTCCTGATTCGTG
TACTTATAATTCACTGATGGAGGGATTCTGTATGGTTGATGATTTGAATAGTGCCAGAGATCTGTTCCTTAATACTATCAGTTGCACCATAGTCGTTGACATGCTCTGCA
AAGATGAAAAATATCGAGAATGTCTAGACTTGTTTCCAAGATTTCCGGTCCAAAAGCATCAGATTGATATTGAATGTTCTTTTGAAAGCCCATTGAATTTCCAAGCTTAG
Protein sequenceShow/hide protein sequence
MVTFTMLIDTLCKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSARDLFLNTISCTIVVDMLCKDEKYRECLDLFPRFPVQKHQIDIECSFESPLNFQA