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IVF0023373 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0023373
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Genome locationchr10:21499495..21499788
RNA-Seq ExpressionIVF0023373
SyntenyIVF0023373
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061317.1 hypothetical protein E6C27_scaffold6213G00130 [Cucumis melo var. makuwa]3.18e-3267.74Show/hide
Query:  MPRTQFSRPGAKSGPPKVSSLYFVLVISFSIIKPRTLRTSTHAPGMLPDTFSQGISREASSLEGELRCDPKWSKRWPMIPTSGEHLSGVRKHW
        MPRTQFSR  AK  P +      VLVIS SI + RTLRTSTH  GMLP  F+QGI REASSLEGEL  DPK  KRWPM+ TSGE LSGVR HW
Subjt:  MPRTQFSRPGAKSGPPKVSSLYFVLVISFSIIKPRTLRTSTHAPGMLPDTFSQGISREASSLEGELRCDPKWSKRWPMIPTSGEHLSGVRKHW

KAA0062888.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]1.33e-3370.53Show/hide
Query:  RARMPRTQFSRPGAKSGPPKVSSLYFVLVISFSIIKPRTLRTSTHAPGMLPDTFSQGISREASSLEGELRCDPKWSKRWPMIPTSGEHLSGVRKH
        RARMPR+QFSR GAKS  P VSSL FVLVI+ SI + RT RTSTH  GMLPD FS+GI +EASSLEGEL C+PK SKRW M+PTS E  SG+R H
Subjt:  RARMPRTQFSRPGAKSGPPKVSSLYFVLVISFSIIKPRTLRTSTHAPGMLPDTFSQGISREASSLEGELRCDPKWSKRWPMIPTSGEHLSGVRKH

TYK15439.1 uncharacterized protein E5676_scaffold477G00010 [Cucumis melo var. makuwa]3.07e-2867.9Show/hide
Query:  KSGPPKVSSLYFVLVISFSIIKPRTLRTSTHAPGMLPDTFSQGISREASSLEGELRCDPKWSKRWPMIPTSGEHLSGVRKH
        KSGPP VSS+  VLVI  SI      RTSTH PGMLPD FS GI REA SLEGEL CDPK S+RWPM+PTSG+  S VR H
Subjt:  KSGPPKVSSLYFVLVISFSIIKPRTLRTSTHAPGMLPDTFSQGISREASSLEGELRCDPKWSKRWPMIPTSGEHLSGVRKH

TYK22521.1 uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa]5.84e-2947.33Show/hide
Query:  RARMPRTQFSRPGAKSGPPKVSSLYFVLVISFSIIKPRTLRTSTHAPGMLPDTFSQ--------------------------------------------
        RARMP+TQFSRPG KS PP VS+L  VLV S SI    T RTSTH PGMLPDTFS+                                            
Subjt:  RARMPRTQFSRPGAKSGPPKVSSLYFVLVISFSIIKPRTLRTSTHAPGMLPDTFSQ--------------------------------------------

Query:  ----------GISREASSLEGELRCDPKWSKRWPMIPTSGEHLSGVRKHW
                  GI REASSLEGEL CDPK SKRWPM+PT GE  SG R HW
Subjt:  ----------GISREASSLEGELRCDPKWSKRWPMIPTSGEHLSGVRKHW

TYK23424.1 gag/pol protein [Cucumis melo var. makuwa]8.16e-2868.67Show/hide
Query:  AKSGPPKVSSLYFVLVISFSIIKPRTLRTSTHAPGMLPDTFSQGISREASSLEGELRCDPKWSKRWPMIPTSGEHLSGVRKHW
        +K+    VSSLYF+LVIS  I    T RTSTH   MLPD FSQGI REASSLEGELRCDPKW KRWPM+ TSGE  SGVR +W
Subjt:  AKSGPPKVSSLYFVLVISFSIIKPRTLRTSTHAPGMLPDTFSQGISREASSLEGELRCDPKWSKRWPMIPTSGEHLSGVRKHW

TrEMBL top hitse value%identityAlignment
A0A5A7V368 Uncharacterized protein9.9e-2567.74Show/hide
Query:  MPRTQFSRPGAKSGPPKVSSLYFVLVISFSIIKPRTLRTSTHAPGMLPDTFSQGISREASSLEGELRCDPKWSKRWPMIPTSGEHLSGVRKHW
        MPRTQFSR  AK  P +      VLVIS SI + RTLRTSTH  GMLP  F+QGI REASSLEGEL  DPK  KRWPM+ TSGE LSGVR HW
Subjt:  MPRTQFSRPGAKSGPPKVSSLYFVLVISFSIIKPRTLRTSTHAPGMLPDTFSQGISREASSLEGELRCDPKWSKRWPMIPTSGEHLSGVRKHW

A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein5.6e-2870.53Show/hide
Query:  RARMPRTQFSRPGAKSGPPKVSSLYFVLVISFSIIKPRTLRTSTHAPGMLPDTFSQGISREASSLEGELRCDPKWSKRWPMIPTSGEHLSGVRKH
        RARMPR+QFSR GAKS  P VSSL FVLVI+ SI + RT RTSTH  GMLPD FS+GI +EASSLEGEL C+PK SKRW M+PTS E  SG+R H
Subjt:  RARMPRTQFSRPGAKSGPPKVSSLYFVLVISFSIIKPRTLRTSTHAPGMLPDTFSQGISREASSLEGELRCDPKWSKRWPMIPTSGEHLSGVRKH

A0A5D3CZ27 ULP_PROTEASE domain-containing protein2.3e-2167.9Show/hide
Query:  KSGPPKVSSLYFVLVISFSIIKPRTLRTSTHAPGMLPDTFSQGISREASSLEGELRCDPKWSKRWPMIPTSGEHLSGVRKH
        KSGPP VSS+  VLVI  SI      RTSTH PGMLPD FS GI REA SLEGEL CDPK S+RWPM+PTSG+  S VR H
Subjt:  KSGPPKVSSLYFVLVISFSIIKPRTLRTSTHAPGMLPDTFSQGISREASSLEGELRCDPKWSKRWPMIPTSGEHLSGVRKH

A0A5D3DFP2 Uncharacterized protein8.3e-2447.33Show/hide
Query:  RARMPRTQFSRPGAKSGPPKVSSLYFVLVISFSIIKPRTLRTSTHAPGMLPDTFSQ--------------------------------------------
        RARMP+TQFSRPG KS PP VS+L  VLV S SI    T RTSTH PGMLPDTFS+                                            
Subjt:  RARMPRTQFSRPGAKSGPPKVSSLYFVLVISFSIIKPRTLRTSTHAPGMLPDTFSQ--------------------------------------------

Query:  ----------GISREASSLEGELRCDPKWSKRWPMIPTSGEHLSGVRKHW
                  GI REASSLEGEL CDPK SKRWPM+PT GE  SG R HW
Subjt:  ----------GISREASSLEGELRCDPKWSKRWPMIPTSGEHLSGVRKHW

A0A5D3DIF8 Gag/pol protein9.2e-2368.67Show/hide
Query:  AKSGPPKVSSLYFVLVISFSIIKPRTLRTSTHAPGMLPDTFSQGISREASSLEGELRCDPKWSKRWPMIPTSGEHLSGVRKHW
        +K+    VSSLYF+LVIS  I    T RTSTH   MLPD FSQGI REASSLEGELRCDPKW KRWPM+ TSGE  SGVR +W
Subjt:  AKSGPPKVSSLYFVLVISFSIIKPRTLRTSTHAPGMLPDTFSQGISREASSLEGELRCDPKWSKRWPMIPTSGEHLSGVRKHW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGAGCGAGAATGCCCCGGACTCAGTTTTCTCGTCCTGGGGCAAAAAGCGGTCCTCCAAAGGTTTCTTCCCTTTACTTCGTATTGGTCATAAGTTTCTCGATCATCAA
GCCTCGTACTCTGAGGACATCAACCCACGCTCCTGGTATGCTCCCTGACACGTTTTCCCAAGGTATAAGTAGGGAAGCGAGCTCATTGGAGGGAGAACTGAGGTGCGACC
CAAAATGGTCCAAAAGATGGCCAATGATTCCAACGAGTGGCGAGCATTTGTCCGGTGTCAGAAAGCACTGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCGAGCGAGAATGCCCCGGACTCAGTTTTCTCGTCCTGGGGCAAAAAGCGGTCCTCCAAAGGTTTCTTCCCTTTACTTCGTATTGGTCATAAGTTTCTCGATCATCAA
GCCTCGTACTCTGAGGACATCAACCCACGCTCCTGGTATGCTCCCTGACACGTTTTCCCAAGGTATAAGTAGGGAAGCGAGCTCATTGGAGGGAGAACTGAGGTGCGACC
CAAAATGGTCCAAAAGATGGCCAATGATTCCAACGAGTGGCGAGCATTTGTCCGGTGTCAGAAAGCACTGGTAA
Protein sequenceShow/hide protein sequence
MRARMPRTQFSRPGAKSGPPKVSSLYFVLVISFSIIKPRTLRTSTHAPGMLPDTFSQGISREASSLEGELRCDPKWSKRWPMIPTSGEHLSGVRKHW