; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0023402 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0023402
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRRM domain-containing protein
Genome locationchr05:25757852..25761842
RNA-Seq ExpressionIVF0023402
SyntenyIVF0023402
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0016607 - nuclear speck (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK10694.1 zinc finger CCCH domain-containing protein 25 [Cucumis melo var. makuwa]8.67e-237100Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
        MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE

Query:  RDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGG
        RDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGG
Subjt:  RDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGG

Query:  GIDKTDDYDKSLDNDRDQVLRRDNGLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR
        GIDKTDDYDKSLDNDRDQVLRRDNGLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR
Subjt:  GIDKTDDYDKSLDNDRDQVLRRDNGLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR

Query:  SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
        SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
Subjt:  SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG

XP_004139331.2 U1 small nuclear ribonucleoprotein 70 kDa [Cucumis sativus]3.02e-22994.72Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
        MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE

Query:  RDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGG
        RDV+WERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLP+DQFLDR+PELEKTSKDNEK+HDLKLNHDQDWEKDHGADLSGG 
Subjt:  RDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGG

Query:  GIDKTDDYDKSLDNDRDQVLRRD--------------NGLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK
        GIDKTDDYDKSLDNDRDQVLRRD              NGLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK
Subjt:  GIDKTDDYDKSLDNDRDQVLRRD--------------NGLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK

Query:  AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
        AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
Subjt:  AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG

XP_008457973.1 PREDICTED: zinc finger CCCH domain-containing protein 25 [Cucumis melo]2.04e-23599.42Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
        MTVDDDSSIYVGGLPYDATED+LRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE

Query:  RDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGG
        RDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGG
Subjt:  RDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGG

Query:  GIDKTDDYDKSLDNDRDQVLRRDNGLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR
        GIDKTDDYDKSLDNDRDQVLRRDN LTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR
Subjt:  GIDKTDDYDKSLDNDRDQVLRRDNGLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR

Query:  SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
        SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
Subjt:  SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG

XP_023547216.1 U1 small nuclear ribonucleoprotein 70 kDa [Cucurbita pepo subsp. pepo]2.02e-20388.15Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
        MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGV +R GGRFG+E NRFD E
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE

Query:  RDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGG
        RDVNWERDRDRGRDY+HDRYR RGRNNDWSR+ DRSREHDLDKER Y+HSQDRDLPKD  LDR+PELEK  K NE+  DLKL+H QDWEKDH AD +GGG
Subjt:  RDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGG

Query:  GIDKTDDYDKSLDNDRDQVLRRDNGLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR
        GID TDDYDKSL +DRDQ+ RRDNGL IEGRTAR+LSSDSSDDYIHELKEQLEISTER EELRKE+SQIEER+GEK KLVVELQKKAKKLEDALISAKKR
Subjt:  GIDKTDDYDKSLDNDRDQVLRRDNGLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR

Query:  SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
        SSFRQ QL KLHKSFLLVKDYS+RLK SEQELQALVESTAIESDVG
Subjt:  SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG

XP_038889756.1 serine/threonine-protein kinase prpf4B [Benincasa hispida]7.60e-21591.91Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
        MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGR+IEGRVVRVNGVKSR GGRFG+EGNRFD E
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE

Query:  RDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGG
        RDV+WERDRDRGRDYDHDRYRHRGRNNDWSRD DRSREHDLDKERGY+HSQD D PKD+ LDRDPELEK+SKDNEK+HDLKLNHDQD EK+HGAD  GGG
Subjt:  RDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGG

Query:  GIDKTDDYDKSLDNDRDQVLRRDNGLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR
        GID  DDY+KSLDNDR+Q+ RRDNGLT EGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLV+ELQKKAKKLEDALISAKKR
Subjt:  GIDKTDDYDKSLDNDRDQVLRRDNGLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR

Query:  SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
        SSFRQ QL KLHKSFLLVKDYS+RLKTSEQELQALVESTAIESDVG
Subjt:  SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG

TrEMBL top hitse value%identityAlignment
A0A0A0LIV9 RRM domain-containing protein1.1e-17994.72Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
        MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE

Query:  RDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGG
        RDV+WERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLP+DQFLDR+PELEKTSKDNEK+HDLKLNHDQDWEKDHGADLSGG 
Subjt:  RDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGG

Query:  GIDKTDDY--------------DKSLDNDRDQVLRRDNGLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK
        GIDKTDDY              DKSLDNDRDQVLRRDNGLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK
Subjt:  GIDKTDDY--------------DKSLDNDRDQVLRRDNGLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK

Query:  AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
        AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
Subjt:  AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG

A0A1S3C6W1 zinc finger CCCH domain-containing protein 253.4e-18499.42Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
        MTVDDDSSIYVGGLPYDATED+LRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE

Query:  RDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGG
        RDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGG
Subjt:  RDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGG

Query:  GIDKTDDYDKSLDNDRDQVLRRDNGLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR
        GIDKTDDYDKSLDNDRDQVLRRDN LTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR
Subjt:  GIDKTDDYDKSLDNDRDQVLRRDNGLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR

Query:  SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
        SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
Subjt:  SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG

A0A5A7V7D5 Zinc finger CCCH domain-containing protein 253.4e-18499.42Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
        MTVDDDSSIYVGGLPYDATED+LRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE

Query:  RDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGG
        RDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGG
Subjt:  RDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGG

Query:  GIDKTDDYDKSLDNDRDQVLRRDNGLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR
        GIDKTDDYDKSLDNDRDQVLRRDN LTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR
Subjt:  GIDKTDDYDKSLDNDRDQVLRRDNGLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR

Query:  SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
        SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
Subjt:  SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG

A0A5D3CHM1 Zinc finger CCCH domain-containing protein 253.0e-185100Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
        MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE

Query:  RDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGG
        RDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGG
Subjt:  RDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGG

Query:  GIDKTDDYDKSLDNDRDQVLRRDNGLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR
        GIDKTDDYDKSLDNDRDQVLRRDNGLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR
Subjt:  GIDKTDDYDKSLDNDRDQVLRRDNGLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR

Query:  SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
        SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
Subjt:  SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG

A0A6J1G3E0 U1 small nuclear ribonucleoprotein 70 kDa1.7e-15988.15Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
        MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGV +R GGRFG+E NRFD E
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE

Query:  RDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGG
        RDVNWERDRDRGRDY+HDRYR RGRNNDWSR+ DRSREHDLDKER Y+HSQDRDLPKD  LDR+PELEK  K NE+  DLKL+H QDWEKDH AD +GGG
Subjt:  RDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGG

Query:  GIDKTDDYDKSLDNDRDQVLRRDNGLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR
        GID TDDYDKSL +DRDQ+ RRDNGL IEGRTAR+LSSDSSDDYIHELKEQLEISTER EELRKE+SQIEER+GEK KLVVELQKKAKKLEDALISAKKR
Subjt:  GIDKTDDYDKSLDNDRDQVLRRDNGLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR

Query:  SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
        SSFRQ QL KLHKSFLLVKDYS+RLK SEQELQALVESTAIESDVG
Subjt:  SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG

SwissProt top hitse value%identityAlignment
O22703 Glycine-rich RNA-binding protein RZ1B1.9e-1135.2Show/hide
Query:  DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGR---------------
        +S I+VGGL +D TE  L   FD YG +   +I+  R T R + +GF+TFT+ R A DAIK M GR +  +V+ VN  + ++GG                
Subjt:  DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGR---------------

Query:  FGKEGNRFDAERDVNWERDRDRGRDYDHDRYR----HRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRD
         G E   F   R  +W RD     D D +R+R     R R  D     DR  + DL++ER  +   DR +  D   DRD
Subjt:  FGKEGNRFDAERDVNWERDRDRGRDYDHDRYR----HRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRD

P60826 Cold-inducible RNA-binding protein4.0e-0933.8Show/hide
Query:  DDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGV-KSRLGGRFGKEGNRFDAERD
        D+  ++VGGL +D  E +L ++F  YG +  V ++ DR T R + +GFVTF N   A DA+  M+G++++GR +RV+   KS      G  G        
Subjt:  DDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGV-KSRLGGRFGKEGNRFDAERD

Query:  VNWERDRDRG-------RDYDHDRYRHRGRNNDWSRDHDRSR
            R R RG       R Y   R+  R      SRD+  SR
Subjt:  VNWERDRDRG-------RDYDHDRYRHRGRNNDWSRDHDRSR

Q18409 Probable splicing factor, arginine/serine-rich 65.6e-1136.02Show/hide
Query:  DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEG---RVVRVNGVKSRLGGRFGKEGNR------
        D+ +YVGGLP DAT   L  IFD +G +  V +    + R   + FV + + R A DA++ +DG  I G   RV    G +   GGR G  G R      
Subjt:  DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEG---RVVRVNGVKSRLGGRFGKEGNR------

Query:  ---FDAERDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRD
           +  +R  +  R RDRGRD   DR R R R+    R  +RSRE +  + R  +  Q+RD
Subjt:  ---FDAERDVNWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRD

Q28IQ9 Cold-inducible RNA-binding protein1.4e-0936.71Show/hide
Query:  DDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDR-STRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVN----GVKSRLGG-RFGKEGNR--
        D+  ++VGGL ++ TE+SL ++F  YG V  V ++ DR S R + +GFVTF NP  A DA+  M+G++++GR +RV+        R GG R G  G R  
Subjt:  DDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDR-STRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVN----GVKSRLGG-RFGKEGNR--

Query:  FDAERDVNWERDRDRGRDYDHDRYRHRGRNNDWSRD-HDRSREHDLDKERG-YKHSQD
        F   R      DR  G     +  R  G  +  SRD + RS     D+  G Y+ S D
Subjt:  FDAERDVNWERDRDRGRDYDHDRYRHRGRNNDWSRD-HDRSREHDLDKERG-YKHSQD

Q9FNR1 Glycine-rich RNA-binding protein 3, mitochondrial1.9e-1447.78Show/hide
Query:  SSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRL-GGRFGKEG
        S +++GG+ Y   EDSLR  F  YG VV  ++I DR T R + +GFVTFT+  +A  AI+ +DGR + GRVV+VN    R  GG FG  G
Subjt:  SSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRL-GGRFGKEG

Arabidopsis top hitse value%identityAlignment
AT4G39260.1 cold, circadian rhythm, and RNA binding 16.1e-1342.86Show/hide
Query:  YVGGLPYDATEDSLRRIFDLYGAVVAVKIINDR-STRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSR-----LGGRFGKEG
        +VGGL +   ++ L+R F  +G V+  KIINDR S R + +GFVTF + ++  DAI++M+G+ ++GRV+ VN  +SR      GGR G  G
Subjt:  YVGGLPYDATEDSLRRIFDLYGAVVAVKIINDR-STRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSR-----LGGRFGKEG

AT4G39260.2 cold, circadian rhythm, and RNA binding 16.1e-1342.86Show/hide
Query:  YVGGLPYDATEDSLRRIFDLYGAVVAVKIINDR-STRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSR-----LGGRFGKEG
        +VGGL +   ++ L+R F  +G V+  KIINDR S R + +GFVTF + ++  DAI++M+G+ ++GRV+ VN  +SR      GGR G  G
Subjt:  YVGGLPYDATEDSLRRIFDLYGAVVAVKIINDR-STRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSR-----LGGRFGKEG

AT4G39260.3 cold, circadian rhythm, and RNA binding 16.1e-1343.37Show/hide
Query:  YVGGLPYDATEDSLRRIFDLYGAVVAVKIINDR-STRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFG
        +VGGL +   ++ L+R F  +G V+  KIINDR S R + +GFVTF + ++  DAI++M+G+ ++GRV+ VN  +SR  G  G
Subjt:  YVGGLPYDATEDSLRRIFDLYGAVVAVKIINDR-STRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFG

AT5G19960.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.0e-5645.14Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE
        MT+DD +S+YVGGLPYD TE+++RR+F +YG+V+ VKI+NDRS RGKCYGFVTF+N RSA DAI+DMDG++I GR VRVN V +R GGR      R    
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAE

Query:  RDVNWERDRDRGRD--YDHDRYRHRGRNNDWSRDHDRSREHD-LDKERGYKHSQDRDLPKD-QFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADL
            W+R  DR  D  Y+ DRY  R R  D  R  DR ++H  ++KER Y+HS D +   D   +DR+   E+    +E           DW  D  + +
Subjt:  RDVNWERDRDRGRD--YDHDRYRHRGRNNDWSRDHDRSREHD-LDKERGYKHSQDRDLPKD-QFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADL

Query:  SGGGGIDKTDDYDKSLDNDRDQVLRRDNGLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALIS
          G GI+ T     S    R Q  +R++   ++G   RD  S+SS D  H++KE LE   +  E LR EV  +EER   KE +  ELQKK+K+LED LI+
Subjt:  SGGGGIDKTDDYDKSLDNDRDQVLRRDNGLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALIS

Query:  AKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
         KK  S R+ +L KLHKS+  V++ +  LK  EQELQ LV S A E   G
Subjt:  AKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG

AT5G61030.1 glycine-rich RNA-binding protein 31.3e-1547.78Show/hide
Query:  SSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRL-GGRFGKEG
        S +++GG+ Y   EDSLR  F  YG VV  ++I DR T R + +GFVTFT+  +A  AI+ +DGR + GRVV+VN    R  GG FG  G
Subjt:  SSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRL-GGRFGKEG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGGTGGACGACGATAGCTCGATATACGTTGGCGGTCTTCCTTACGATGCAACGGAGGATAGCTTGCGCAGAATCTTCGATTTGTACGGCGCCGTCGTCGCTGTTAA
GATTATCAATGATCGTTCTACTAGGGGAAAGTGCTATGGCTTTGTTACCTTTACAAACCCTCGATCTGCTATTGATGCCATAAAAGACATGGATGGAAGGACTATTGAAG
GACGGGTTGTCAGAGTTAATGGAGTGAAGAGTAGACTTGGTGGAAGGTTTGGTAAAGAAGGTAATCGGTTCGATGCAGAGAGGGACGTGAACTGGGAGAGGGATAGAGAT
CGAGGGAGGGATTATGATCATGATAGGTATCGTCATAGAGGTAGAAACAATGACTGGTCTAGAGATCATGATCGGTCTCGAGAACATGATTTGGACAAGGAAAGAGGATA
TAAGCATTCACAAGATCGTGATCTACCAAAGGATCAATTTTTGGATAGGGATCCAGAGTTGGAAAAAACTTCAAAGGATAATGAGAAGTTACATGACTTGAAGTTGAACC
ACGATCAAGATTGGGAAAAAGATCATGGTGCAGATTTGAGTGGAGGCGGAGGCATTGATAAAACTGATGATTATGATAAAAGCCTTGACAATGACAGAGATCAAGTCTTA
AGGAGAGATAACGGTCTTACAATTGAAGGTCGAACTGCTCGGGATCTTTCATCTGATTCTAGTGATGATTATATCCATGAATTAAAGGAACAACTGGAGATATCAACAGA
AAGATTGGAAGAACTCAGAAAAGAGGTTTCTCAAATAGAGGAGAGGTCAGGAGAGAAAGAAAAACTTGTGGTTGAGTTGCAAAAGAAAGCCAAGAAACTGGAAGATGCAT
TGATCAGTGCAAAGAAGCGCTCTTCATTCCGTCAGACACAGCTGATCAAGCTCCATAAAAGCTTTCTGCTAGTAAAGGATTATTCTAAGAGACTTAAAACCAGCGAACAA
GAACTTCAGGCTCTAGTTGAATCAACTGCAATAGAGAGTGATGTCGGATGA
mRNA sequenceShow/hide mRNA sequence
ATATGTCGTTAGGTTTGCGTCTCACTCCCGACATGTCGATTAACGGTTCATAGGCGAGTTTTTAACATTGGGGAAGGGAGTTCGGTGGTGTTTCTCGACTTTCTTCCTTC
TTCTCGGACATTGGATTTTCACGGTGGTCATGACGGTGGACGACGATAGCTCGATATACGTTGGCGGTCTTCCTTACGATGCAACGGAGGATAGCTTGCGCAGAATCTTC
GATTTGTACGGCGCCGTCGTCGCTGTTAAGATTATCAATGATCGTTCTACTAGGGGAAAGTGCTATGGCTTTGTTACCTTTACAAACCCTCGATCTGCTATTGATGCCAT
AAAAGACATGGATGGAAGGACTATTGAAGGACGGGTTGTCAGAGTTAATGGAGTGAAGAGTAGACTTGGTGGAAGGTTTGGTAAAGAAGGTAATCGGTTCGATGCAGAGA
GGGACGTGAACTGGGAGAGGGATAGAGATCGAGGGAGGGATTATGATCATGATAGGTATCGTCATAGAGGTAGAAACAATGACTGGTCTAGAGATCATGATCGGTCTCGA
GAACATGATTTGGACAAGGAAAGAGGATATAAGCATTCACAAGATCGTGATCTACCAAAGGATCAATTTTTGGATAGGGATCCAGAGTTGGAAAAAACTTCAAAGGATAA
TGAGAAGTTACATGACTTGAAGTTGAACCACGATCAAGATTGGGAAAAAGATCATGGTGCAGATTTGAGTGGAGGCGGAGGCATTGATAAAACTGATGATTATGATAAAA
GCCTTGACAATGACAGAGATCAAGTCTTAAGGAGAGATAACGGTCTTACAATTGAAGGTCGAACTGCTCGGGATCTTTCATCTGATTCTAGTGATGATTATATCCATGAA
TTAAAGGAACAACTGGAGATATCAACAGAAAGATTGGAAGAACTCAGAAAAGAGGTTTCTCAAATAGAGGAGAGGTCAGGAGAGAAAGAAAAACTTGTGGTTGAGTTGCA
AAAGAAAGCCAAGAAACTGGAAGATGCATTGATCAGTGCAAAGAAGCGCTCTTCATTCCGTCAGACACAGCTGATCAAGCTCCATAAAAGCTTTCTGCTAGTAAAGGATT
ATTCTAAGAGACTTAAAACCAGCGAACAAGAACTTCAGGCTCTAGTTGAATCAACTGCAATAGAGAGTGATGTCGGATGAAGTATGAAGTTCCAACCAATTTCAATTTCA
ATTTCAATCTCTTTACAAGCTGCATTATGCTATTCTGTTGGCATGCAACGCTTCACCATGGTCGGGGCATTCACGGTCTTTTGTTCATACTAATGACAAGTTGTGATGTA
GAAATAGAATTCCTTTGTAACCTAATTTTCCCAAGATTGAGCTGTCCATTCATTTCATGGTTTGTTCACAATCAACTACGCACATGTGTTTACTCACTTTTATCAAGTTA
AATAGGTAACAGTTGTATTTCAAAATTAAATTTAGCATCCAAGTAGTTTTTCCACCTTGCCTGAGATTCCTTCCCATGAATGGAATTTTAAAGTTTAGGTTGTAATCCTT
TTCAAACCGAATTCCATACCGGTATTTCGTTA
Protein sequenceShow/hide protein sequence
MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRD
RGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDLKLNHDQDWEKDHGADLSGGGGIDKTDDYDKSLDNDRDQVL
RRDNGLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQ
ELQALVESTAIESDVG