; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0023410 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0023410
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionphotosystem II 5 kDa protein, chloroplastic
Genome locationchr05:1085111..1085835
RNA-Seq ExpressionIVF0023410
SyntenyIVF0023410
Gene Ontology termsNA
InterPro domainsIPR040296 - Photosystem II 5kDa protein, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570402.1 Photosystem II 5 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.25e-4178.76Show/hide
Query:  MASMAMTASFLPTTATKQPSATP---RRALIVAKASTS----NETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAP
        MASM++TASFLP TAT QPSA     RRAL V KASTS    +  SN NLE+KNVKVES QGRRELVAAAVTVAAAT AKAAMADEP RGS EAKQKYAP
Subjt:  MASMAMTASFLPTTATKQPSATP---RRALIVAKASTS----NETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAP

Query:  ICVTMPTARICRK
        ICVTMPTARICRK
Subjt:  ICVTMPTARICRK

XP_004143237.1 photosystem II 5 kDa protein, chloroplastic [Cucumis sativus]1.28e-5694.34Show/hide
Query:  MASMAMTASFLPTTATKQPSATPRRALIVAKASTSNETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPT
        MASMAMTASFLPTTATKQPS+T RR LIVAKASTSN+ SNVN+EVKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPT
Subjt:  MASMAMTASFLPTTATKQPSATPRRALIVAKASTSNETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPT

Query:  ARICRK
        ARICRK
Subjt:  ARICRK

XP_008449703.1 PREDICTED: photosystem II 5 kDa protein, chloroplastic [Cucumis melo]1.17e-102100Show/hide
Query:  MDDVFNGKNQHEPSITSLPPTLPNINYILFLLHPIPQLINNLSNPNFSNFLNMASMAMTASFLPTTATKQPSATPRRALIVAKASTSNETSNVNLEVKNV
        MDDVFNGKNQHEPSITSLPPTLPNINYILFLLHPIPQLINNLSNPNFSNFLNMASMAMTASFLPTTATKQPSATPRRALIVAKASTSNETSNVNLEVKNV
Subjt:  MDDVFNGKNQHEPSITSLPPTLPNINYILFLLHPIPQLINNLSNPNFSNFLNMASMAMTASFLPTTATKQPSATPRRALIVAKASTSNETSNVNLEVKNV

Query:  KVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPTARICRK
        KVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPTARICRK
Subjt:  KVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPTARICRK

XP_022944588.1 photosystem II 5 kDa protein, chloroplastic [Cucurbita moschata]3.55e-4378.18Show/hide
Query:  MASMAMTASFLPTTATKQPSATPRRALIVAKASTS----NETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICV
        MASM++TASFLP TAT+  +A  RRAL V KASTS    +  SN NLE+KNVKVES QGRRELVAAAVTVAAAT AKAAMADEP RGS EAKQKYAPICV
Subjt:  MASMAMTASFLPTTATKQPSATPRRALIVAKASTS----NETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICV

Query:  TMPTARICRK
        TMPTARICRK
Subjt:  TMPTARICRK

XP_038901593.1 photosystem II 5 kDa protein, chloroplastic [Benincasa hispida]5.78e-5388.68Show/hide
Query:  MASMAMTASFLPTTATKQPSATPRRALIVAKASTSNETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPT
        MASMAMTASFLP TA KQPS   RRAL+VAKASTS++ SNVNLE+KNVKVE+RQGRRELVAAAVTVAAATLAKAAMADEP RGSPEAKQKYAPICVTMPT
Subjt:  MASMAMTASFLPTTATKQPSATPRRALIVAKASTSNETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPT

Query:  ARICRK
        ARICRK
Subjt:  ARICRK

TrEMBL top hitse value%identityAlignment
A0A0A0KIB2 Uncharacterized protein6.5e-4294.34Show/hide
Query:  MASMAMTASFLPTTATKQPSATPRRALIVAKASTSNETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPT
        MASMAMTASFLPTTATKQPS+T RR LIVAKASTSN+ SNVN+EVKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPT
Subjt:  MASMAMTASFLPTTATKQPSATPRRALIVAKASTSNETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPT

Query:  ARICRK
        ARICRK
Subjt:  ARICRK

A0A1S3BML8 photosystem II 5 kDa protein, chloroplastic8.1e-77100Show/hide
Query:  MDDVFNGKNQHEPSITSLPPTLPNINYILFLLHPIPQLINNLSNPNFSNFLNMASMAMTASFLPTTATKQPSATPRRALIVAKASTSNETSNVNLEVKNV
        MDDVFNGKNQHEPSITSLPPTLPNINYILFLLHPIPQLINNLSNPNFSNFLNMASMAMTASFLPTTATKQPSATPRRALIVAKASTSNETSNVNLEVKNV
Subjt:  MDDVFNGKNQHEPSITSLPPTLPNINYILFLLHPIPQLINNLSNPNFSNFLNMASMAMTASFLPTTATKQPSATPRRALIVAKASTSNETSNVNLEVKNV

Query:  KVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPTARICRK
        KVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPTARICRK
Subjt:  KVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPTARICRK

A0A5A7TID9 Photosystem II 5 kDa protein8.1e-77100Show/hide
Query:  MDDVFNGKNQHEPSITSLPPTLPNINYILFLLHPIPQLINNLSNPNFSNFLNMASMAMTASFLPTTATKQPSATPRRALIVAKASTSNETSNVNLEVKNV
        MDDVFNGKNQHEPSITSLPPTLPNINYILFLLHPIPQLINNLSNPNFSNFLNMASMAMTASFLPTTATKQPSATPRRALIVAKASTSNETSNVNLEVKNV
Subjt:  MDDVFNGKNQHEPSITSLPPTLPNINYILFLLHPIPQLINNLSNPNFSNFLNMASMAMTASFLPTTATKQPSATPRRALIVAKASTSNETSNVNLEVKNV

Query:  KVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPTARICRK
        KVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPTARICRK
Subjt:  KVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPTARICRK

A0A6J1FY72 photosystem II 5 kDa protein, chloroplastic1.0e-3178.18Show/hide
Query:  MASMAMTASFLPTTATKQPSATPRRALIVAKASTS----NETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICV
        MASM++TASFLP TAT+  +A  RRAL V KASTS    +  SN NLE+KNVKVES QGRRELVAAAVTVAAAT AKAAMADEP RGS EAKQKYAPICV
Subjt:  MASMAMTASFLPTTATKQPSATPRRALIVAKASTS----NETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICV

Query:  TMPTARICRK
        TMPTARICRK
Subjt:  TMPTARICRK

A0A6J1J874 photosystem II 5 kDa protein, chloroplastic1.0e-3178.18Show/hide
Query:  MASMAMTASFLPTTATKQPSATPRRALIVAKASTS----NETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICV
        MASM++TASFLP TAT+  +A  RRAL V KASTS    +  SN NLE+KNVKVES QGRRELVAAAVTVAAAT AKAAMADEP RGS EAKQKYAPICV
Subjt:  MASMAMTASFLPTTATKQPSATPRRALIVAKASTS----NETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICV

Query:  TMPTARICRK
        TMPTARICRK
Subjt:  TMPTARICRK

SwissProt top hitse value%identityAlignment
B3EWI4 Photosystem II 5 kDa protein, chloroplastic1.1e-1145.37Show/hide
Query:  MASMAMTASFL--PTTATKQPSATPRRALIVAKASTSNETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMAD-EPARGSPEAKQKYAPICVT
        MAS+ M +SFL   T A  +  +  RR +++ KA    E    N+ +   +     GRREL  A    AA ++AK AMAD EP RG+PEAK+KY+ +CVT
Subjt:  MASMAMTASFL--PTTATKQPSATPRRALIVAKASTSNETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMAD-EPARGSPEAKQKYAPICVT

Query:  MPTARICR
         PTARICR
Subjt:  MPTARICR

P31336 Photosystem II 5 kDa protein, chloroplastic4.7e-1349.06Show/hide
Query:  MASMAMTASFLPTT-ATKQPSATPRRALIVAKASTSNETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMP
        MAS+ MT SFL TT  TK      +R L+VA A+   +  +V +  +  K E   GRRE++ AA   A  ++A  A A EP RGS EAK+ YAP+CVTMP
Subjt:  MASMAMTASFLPTT-ATKQPSATPRRALIVAKASTSNETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMP

Query:  TARICR
        TARICR
Subjt:  TARICR

Q39195 Photosystem II 5 kDa protein, chloroplastic1.4e-1454.21Show/hide
Query:  MASMAMTASFLPTTATKQPSATPRRALIVAKASTSNETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMA--DEPARGSPEAKQKYAPICVTM
        MASM MTA+F P  A K PSAT  R L V +ASTS+ T   +LEVK  +  S   RR+L+  A   A  +LAK AMA  +EP RG+  AK+KYA +CVTM
Subjt:  MASMAMTASFLPTTATKQPSATPRRALIVAKASTSNETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMA--DEPARGSPEAKQKYAPICVTM

Query:  PTARICR
        PTA+ICR
Subjt:  PTARICR

Arabidopsis top hitse value%identityAlignment
AT1G51400.1 Photosystem II 5 kD protein3.5e-1653.7Show/hide
Query:  MASMAMTASFLPTTAT--KQPSATPRRALIVAKASTSNETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMA-DEPARGSPEAKQKYAPICVT
        MASM MT+SFLPT +      S+  RR+L V KAS S  T+  +LE K  + +S + RR+LV  A   A  +LAK AMA DEP RG+  AK+KYAP+CVT
Subjt:  MASMAMTASFLPTTAT--KQPSATPRRALIVAKASTSNETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMA-DEPARGSPEAKQKYAPICVT

Query:  MPTARICR
        MPTA+ICR
Subjt:  MPTARICR

AT3G21055.1 photosystem II subunit T1.0e-1554.21Show/hide
Query:  MASMAMTASFLPTTATKQPSATPRRALIVAKASTSNETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMA--DEPARGSPEAKQKYAPICVTM
        MASM MTA+F P  A K PSAT  R L V +ASTS+ T   +LEVK  +  S   RR+L+  A   A  +LAK AMA  +EP RG+  AK+KYA +CVTM
Subjt:  MASMAMTASFLPTTATKQPSATPRRALIVAKASTSNETSNVNLEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMA--DEPARGSPEAKQKYAPICVTM

Query:  PTARICR
        PTA+ICR
Subjt:  PTARICR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGATGTCTTCAATGGAAAGAATCAACATGAACCTTCAATCACTTCACTTCCTCCCACACTCCCAAACATAAACTACATCCTATTTCTCCTTCACCCAATTCCTCA
ACTTATCAACAATCTCTCTAACCCCAATTTCTCAAATTTCCTAAATATGGCTTCCATGGCTATGACAGCTTCCTTCCTCCCCACCACCGCCACCAAACAACCCTCCGCCA
CCCCCCGTAGAGCCCTTATTGTTGCCAAAGCATCCACCTCTAACGAAACCTCCAATGTCAACTTGGAGGTCAAGAATGTGAAGGTAGAGAGCAGGCAAGGGCGGCGGGAG
TTGGTGGCGGCTGCTGTCACAGTAGCTGCGGCAACCTTGGCGAAGGCGGCGATGGCGGATGAGCCGGCACGTGGGTCTCCTGAAGCCAAGCAGAAGTATGCTCCAATCTG
TGTCACAATGCCTACTGCCCGTATTTGCCGCAAGTGA
mRNA sequenceShow/hide mRNA sequence
AATGGATGATGTCTTCAATGGAAAGAATCAACATGAACCTTCAATCACTTCACTTCCTCCCACACTCCCAAACATAAACTACATCCTATTTCTCCTTCACCCAATTCCTC
AACTTATCAACAATCTCTCTAACCCCAATTTCTCAAATTTCCTAAATATGGCTTCCATGGCTATGACAGCTTCCTTCCTCCCCACCACCGCCACCAAACAACCCTCCGCC
ACCCCCCGTAGAGCCCTTATTGTTGCCAAAGCATCCACCTCTAACGAAACCTCCAATGTCAACTTGGAGGTCAAGAATGTGAAGGTAGAGAGCAGGCAAGGGCGGCGGGA
GTTGGTGGCGGCTGCTGTCACAGTAGCTGCGGCAACCTTGGCGAAGGCGGCGATGGCGGATGAGCCGGCACGTGGGTCTCCTGAAGCCAAGCAGAAGTATGCTCCAATCT
GTGTCACAATGCCTACTGCCCGTATTTGCCGCAAGTGATTTTGAAGAGATGTATTTTTTTTCTCTGTTGTCTTTCTTCTTCTTGTCTATTAAAACCCTTCCATTTGGTTT
CAGACTTTGGAGTTTGATTGTAAAATCTGTAAAACAAAGCTATGAATTGCCATGAATCTCTCTCTTCATGTCCTTTTTTCTTGTTTTTGCCTTTCTCAGTCTCAAAGTTC
ATTCAAGTATTCTTTTTTTCTTCTTCACATTTTATCAATGTTGATGATCATAACACTATACAAAC
Protein sequenceShow/hide protein sequence
MDDVFNGKNQHEPSITSLPPTLPNINYILFLLHPIPQLINNLSNPNFSNFLNMASMAMTASFLPTTATKQPSATPRRALIVAKASTSNETSNVNLEVKNVKVESRQGRRE
LVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPTARICRK