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IVF0023446 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0023446
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionReverse transcriptase
Genome locationchr01:13387397..13387648
RNA-Seq ExpressionIVF0023446
SyntenyIVF0023446
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR000953 - Chromo/chromo shadow domain
IPR016197 - Chromo-like domain superfamily
IPR023780 - Chromo domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060777.1 reverse transcriptase [Cucumis melo var. makuwa]3.95e-3678.82Show/hide
Query:  MQCNIIV--RPTINLSQKEDKDVEEILTKGVSKDQRPTRRIHEYLVKWKNLPTEETSWGTVENLEAWTQKIEEFKLHQSTGTSTI
        MQ N+IV  RPTI+LSQKEDKDVEEIL + V K +RPTRRIHEYLVKWKNLP EE+SW  VE+LEAWTQKIEEFKL QSTGTST+
Subjt:  MQCNIIV--RPTINLSQKEDKDVEEILTKGVSKDQRPTRRIHEYLVKWKNLPTEETSWGTVENLEAWTQKIEEFKLHQSTGTSTI

KAA0062339.1 uncharacterized protein E6C27_scaffold154G00970 [Cucumis melo var. makuwa]5.51e-3674.7Show/hide
Query:  MQCNIIVRPTINLSQKEDKDVEEILTKGVSKDQRPTRRIHEYLVKWKNLPTEETSWGTVENLEAWTQKIEEFKLHQSTGTSTI
        +Q NI+ RP I+LSQKEDKDVEEIL + V +D+RP RRIHEYLVKWKNLP EETSW  VE+LEAW QKIE+FKL Q TGTSTI
Subjt:  MQCNIIVRPTINLSQKEDKDVEEILTKGVSKDQRPTRRIHEYLVKWKNLPTEETSWGTVENLEAWTQKIEEFKLHQSTGTSTI

RRQ65156.1 hypothetical protein CQW39_37580 [Streptomyces griseofuscus]7.46e-3572.29Show/hide
Query:  MQCNIIVRPTINLSQKEDKDVEEILTKGVSKDQRPTRRIHEYLVKWKNLPTEETSWGTVENLEAWTQKIEEFKLHQSTGTSTI
        +Q N++ RP I+LSQKEDKDVEEIL + V + +RP RRIHEYLVKWKNLP EETSW  VE+LEAW QKIE+FKL Q TGTSTI
Subjt:  MQCNIIVRPTINLSQKEDKDVEEILTKGVSKDQRPTRRIHEYLVKWKNLPTEETSWGTVENLEAWTQKIEEFKLHQSTGTSTI

TYK04336.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Cucumis melo var. makuwa]1.54e-3573.49Show/hide
Query:  MQCNIIVRPTINLSQKEDKDVEEILTKGVSKDQRPTRRIHEYLVKWKNLPTEETSWGTVENLEAWTQKIEEFKLHQSTGTSTI
        +Q NI+ RP I+LSQKEDKDVEEIL + V + +RPTRRIHEYLVKWKNLP EETSW  VE+LEAW QKI++FKL Q TGTSTI
Subjt:  MQCNIIVRPTINLSQKEDKDVEEILTKGVSKDQRPTRRIHEYLVKWKNLPTEETSWGTVENLEAWTQKIEEFKLHQSTGTSTI

WP_148103103.1 hypothetical protein, partial [Streptomyces griseofuscus]8.15e-3572.29Show/hide
Query:  MQCNIIVRPTINLSQKEDKDVEEILTKGVSKDQRPTRRIHEYLVKWKNLPTEETSWGTVENLEAWTQKIEEFKLHQSTGTSTI
        +Q N++ RP I+LSQKEDKDVEEIL + V + +RP RRIHEYLVKWKNLP EETSW  VE+LEAW QKIE+FKL Q TGTSTI
Subjt:  MQCNIIVRPTINLSQKEDKDVEEILTKGVSKDQRPTRRIHEYLVKWKNLPTEETSWGTVENLEAWTQKIEEFKLHQSTGTSTI

TrEMBL top hitse value%identityAlignment
A0A5A7UXR6 Reverse transcriptase3.4e-2673.49Show/hide
Query:  MQCNIIVRPTINLSQKEDKDVEEILTKGVSKDQRPTRRIHEYLVKWKNLPTEETSWGTVENLEAWTQKIEEFKLHQSTGTSTI
        +Q N++ RPTI+LSQKEDKDVEEIL + V + +RP RRIHEYLVKWKNLP EETSW  VE+LEAW QKIE+FKL Q TGTSTI
Subjt:  MQCNIIVRPTINLSQKEDKDVEEILTKGVSKDQRPTRRIHEYLVKWKNLPTEETSWGTVENLEAWTQKIEEFKLHQSTGTSTI

A0A5A7V1R7 Reverse transcriptase1.1e-2781.01Show/hide
Query:  IIVRPTINLSQKEDKDVEEILTKGVSKDQRPTRRIHEYLVKWKNLPTEETSWGTVENLEAWTQKIEEFKLHQSTGTSTI
        +IVRPTI+LSQKEDKDVEEIL + V K +RPTRRIHEYLVKWKNLP EE+SW  VE+LEAWTQKIEEFKL QSTGTST+
Subjt:  IIVRPTINLSQKEDKDVEEILTKGVSKDQRPTRRIHEYLVKWKNLPTEETSWGTVENLEAWTQKIEEFKLHQSTGTSTI

A0A5D3C4R1 Reverse transcriptase3.4e-2673.49Show/hide
Query:  MQCNIIVRPTINLSQKEDKDVEEILTKGVSKDQRPTRRIHEYLVKWKNLPTEETSWGTVENLEAWTQKIEEFKLHQSTGTSTI
        +Q N++ RPTI+LSQKEDKDVEEIL + V + +RP RRIHEYLVKWKNLP EETSW  VE+LEAW QKIE+FKL Q TGTSTI
Subjt:  MQCNIIVRPTINLSQKEDKDVEEILTKGVSKDQRPTRRIHEYLVKWKNLPTEETSWGTVENLEAWTQKIEEFKLHQSTGTSTI

A0A5D3DBE0 Reverse transcriptase3.4e-2673.49Show/hide
Query:  MQCNIIVRPTINLSQKEDKDVEEILTKGVSKDQRPTRRIHEYLVKWKNLPTEETSWGTVENLEAWTQKIEEFKLHQSTGTSTI
        +Q N++ RPTI+LSQKEDKDVEEIL + V + +RP RRIHEYLVKWKNLP EETSW  VE+LEAW QKIE+FKL Q TGTSTI
Subjt:  MQCNIIVRPTINLSQKEDKDVEEILTKGVSKDQRPTRRIHEYLVKWKNLPTEETSWGTVENLEAWTQKIEEFKLHQSTGTSTI

A0A5D3DTG2 Chromo domain-containing protein2.0e-2674.7Show/hide
Query:  MQCNIIVRPTINLSQKEDKDVEEILTKGVSKDQRPTRRIHEYLVKWKNLPTEETSWGTVENLEAWTQKIEEFKLHQSTGTSTI
        +Q NI+ RP I+LSQKEDKDVEEIL + V +D+RP RRIHEYLVKWKNLP EETSW  VE+LEAW QKIE+FKL Q TGTSTI
Subjt:  MQCNIIVRPTINLSQKEDKDVEEILTKGVSKDQRPTRRIHEYLVKWKNLPTEETSWGTVENLEAWTQKIEEFKLHQSTGTSTI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAATGCAACATCATAGTTCGACCAACCATCAACCTAAGTCAAAAAGAAGATAAAGATGTTGAAGAAATTCTTACCAAGGGAGTAAGTAAGGACCAAAGACCCACAAG
AAGGATCCACGAGTACCTGGTAAAGTGGAAGAACCTTCCTACGGAAGAGACTAGTTGGGGAACTGTCGAAAACCTAGAAGCCTGGACACAGAAGATTGAAGAGTTCAAAC
TTCACCAGTCGACAGGGACGTCAACTATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAATGCAACATCATAGTTCGACCAACCATCAACCTAAGTCAAAAAGAAGATAAAGATGTTGAAGAAATTCTTACCAAGGGAGTAAGTAAGGACCAAAGACCCACAAG
AAGGATCCACGAGTACCTGGTAAAGTGGAAGAACCTTCCTACGGAAGAGACTAGTTGGGGAACTGTCGAAAACCTAGAAGCCTGGACACAGAAGATTGAAGAGTTCAAAC
TTCACCAGTCGACAGGGACGTCAACTATTTAA
Protein sequenceShow/hide protein sequence
MQCNIIVRPTINLSQKEDKDVEEILTKGVSKDQRPTRRIHEYLVKWKNLPTEETSWGTVENLEAWTQKIEEFKLHQSTGTSTI