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IVF0023456 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0023456
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionReverse transcriptase
Genome locationtig00007088:1252584..1252922
RNA-Seq ExpressionIVF0023456
SyntenyIVF0023456
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036096.1 reverse transcriptase [Cucumis melo var. makuwa]1.25e-75100Show/hide
Query:  MDETSYLGFPLGRSIPMPLAQSLVVRRSNPRVVQAKIKQWGENEKSPARLSPLAIPFLDEQIEAGSVPVEIQEVLNEYVDIMPRRPCPRGIDHEIELVPG
        MDETSYLGFPLGRSIPMPLAQSLVVRRSNPRVVQAKIKQWGENEKSPARLSPLAIPFLDEQIEAGSVPVEIQEVLNEYVDIMPRRPCPRGIDHEIELVPG
Subjt:  MDETSYLGFPLGRSIPMPLAQSLVVRRSNPRVVQAKIKQWGENEKSPARLSPLAIPFLDEQIEAGSVPVEIQEVLNEYVDIMPRRPCPRGIDHEIELVPG

Query:  AKPPAQNAYRMA
        AKPPAQNAYRMA
Subjt:  AKPPAQNAYRMA

KAA0065444.1 reverse transcriptase [Cucumis melo var. makuwa]1.15e-2657.52Show/hide
Query:  IPMPLAQSLVVRRSNPRVVQAKIKQWG----------ENEKSPARLSPLAIPFLDEQIEAGSVPVEIQEVLNEYVDIMPRR-----PCPRGIDHEIELVP
        IPMPLAQ LVV  SN  VVQAKIKQ            +N  S    + +AI  +DEQIE G+VPVEI++VLNEYVDI+        P  RGIDH IELVP
Subjt:  IPMPLAQSLVVRRSNPRVVQAKIKQWG----------ENEKSPARLSPLAIPFLDEQIEAGSVPVEIQEVLNEYVDIMPRR-----PCPRGIDHEIELVP

Query:  GAKPPAQNAYRMA
        GAKPP +NAYRMA
Subjt:  GAKPPAQNAYRMA

KAA0066799.1 reverse transcriptase [Cucumis melo var. makuwa]3.46e-6488.39Show/hide
Query:  MDETSYLGFPLGRSIPMPLAQSLVVRRSNPRVVQAKIKQWGENEKSPARLSPLAIPFLDEQIEAGSVPVEIQEVLNEYVDIMPRRPCPRGIDHEIELVPG
        MDETSYLGFPLGRSIPMPLAQSLVV+RSNP VVQAKIKQ GEN+KSPARL+PLAIPFL EQIE GS+PV+IQEVLNEYVDIM +RPCP GIDHEIELVP 
Subjt:  MDETSYLGFPLGRSIPMPLAQSLVVRRSNPRVVQAKIKQWGENEKSPARLSPLAIPFLDEQIEAGSVPVEIQEVLNEYVDIMPRRPCPRGIDHEIELVPG

Query:  AKPPAQNAYRMA
        AKPPAQNAYRMA
Subjt:  AKPPAQNAYRMA

KAA0066867.1 reverse transcriptase [Cucumis melo var. makuwa]1.01e-6086.61Show/hide
Query:  MDETSYLGFPLGRSIPMPLAQSLVVRRSNPRVVQAKIKQWGENEKSPARLSPLAIPFLDEQIEAGSVPVEIQEVLNEYVDIMPRRPCPRGIDHEIELVPG
        MDE SYLGF LGR IPMPLAQSLVVRRSN  VVQAKIKQWGENE SP RLSPL +PFLDEQIEAGSV VEIQ+VLNEYVDIM RRPCP GIDHEIELVP 
Subjt:  MDETSYLGFPLGRSIPMPLAQSLVVRRSNPRVVQAKIKQWGENEKSPARLSPLAIPFLDEQIEAGSVPVEIQEVLNEYVDIMPRRPCPRGIDHEIELVPG

Query:  AKPPAQNAYRMA
        AKPPAQNAY+MA
Subjt:  AKPPAQNAYRMA

TYJ96846.1 reverse transcriptase [Cucumis melo var. makuwa]1.41e-62100Show/hide
Query:  MPLAQSLVVRRSNPRVVQAKIKQWGENEKSPARLSPLAIPFLDEQIEAGSVPVEIQEVLNEYVDIMPRRPCPRGIDHEIELVPGAKPPAQNAYRMA
        MPLAQSLVVRRSNPRVVQAKIKQWGENEKSPARLSPLAIPFLDEQIEAGSVPVEIQEVLNEYVDIMPRRPCPRGIDHEIELVPGAKPPAQNAYRMA
Subjt:  MPLAQSLVVRRSNPRVVQAKIKQWGENEKSPARLSPLAIPFLDEQIEAGSVPVEIQEVLNEYVDIMPRRPCPRGIDHEIELVPGAKPPAQNAYRMA

TrEMBL top hitse value%identityAlignment
A0A5A7T1J5 Reverse transcriptase8.6e-57100Show/hide
Query:  MDETSYLGFPLGRSIPMPLAQSLVVRRSNPRVVQAKIKQWGENEKSPARLSPLAIPFLDEQIEAGSVPVEIQEVLNEYVDIMPRRPCPRGIDHEIELVPG
        MDETSYLGFPLGRSIPMPLAQSLVVRRSNPRVVQAKIKQWGENEKSPARLSPLAIPFLDEQIEAGSVPVEIQEVLNEYVDIMPRRPCPRGIDHEIELVPG
Subjt:  MDETSYLGFPLGRSIPMPLAQSLVVRRSNPRVVQAKIKQWGENEKSPARLSPLAIPFLDEQIEAGSVPVEIQEVLNEYVDIMPRRPCPRGIDHEIELVPG

Query:  AKPPAQNAYRMA
        AKPPAQNAYRMA
Subjt:  AKPPAQNAYRMA

A0A5A7VDT8 Reverse transcriptase3.8e-2057.52Show/hide
Query:  IPMPLAQSLVVRRSNPRVVQAKIKQWG----------ENEKSPARLSPLAIPFLDEQIEAGSVPVEIQEVLNEYVDIM-----PRRPCPRGIDHEIELVP
        IPMPLAQ LVV  SN  VVQAKIKQ            +N  S    + +AI  +DEQIE G+VPVEI++VLNEYVDI+        P  RGIDH IELVP
Subjt:  IPMPLAQSLVVRRSNPRVVQAKIKQWG----------ENEKSPARLSPLAIPFLDEQIEAGSVPVEIQEVLNEYVDIM-----PRRPCPRGIDHEIELVP

Query:  GAKPPAQNAYRMA
        GAKPP +NAYRMA
Subjt:  GAKPPAQNAYRMA

A0A5A7VIA0 Reverse transcriptase2.4e-4686.61Show/hide
Query:  MDETSYLGFPLGRSIPMPLAQSLVVRRSNPRVVQAKIKQWGENEKSPARLSPLAIPFLDEQIEAGSVPVEIQEVLNEYVDIMPRRPCPRGIDHEIELVPG
        MDE SYLGF LGR IPMPLAQSLVVRRSN  VVQAKIKQWGENE SP RLSPL +PFLDEQIEAGSV VEIQ+VLNEYVDIM RRPCP GIDHEIELVP 
Subjt:  MDETSYLGFPLGRSIPMPLAQSLVVRRSNPRVVQAKIKQWGENEKSPARLSPLAIPFLDEQIEAGSVPVEIQEVLNEYVDIMPRRPCPRGIDHEIELVPG

Query:  AKPPAQNAYRMA
        AKPPAQNAY+MA
Subjt:  AKPPAQNAYRMA

A0A5A7VNF6 Reverse transcriptase4.3e-4888.39Show/hide
Query:  MDETSYLGFPLGRSIPMPLAQSLVVRRSNPRVVQAKIKQWGENEKSPARLSPLAIPFLDEQIEAGSVPVEIQEVLNEYVDIMPRRPCPRGIDHEIELVPG
        MDETSYLGFPLGRSIPMPLAQSLVV+RSNP VVQAKIKQ GEN+KSPARL+PLAIPFL EQIE GS+PV+IQEVLNEYVDIM +RPCP GIDHEIELVP 
Subjt:  MDETSYLGFPLGRSIPMPLAQSLVVRRSNPRVVQAKIKQWGENEKSPARLSPLAIPFLDEQIEAGSVPVEIQEVLNEYVDIMPRRPCPRGIDHEIELVPG

Query:  AKPPAQNAYRMA
        AKPPAQNAYRMA
Subjt:  AKPPAQNAYRMA

A0A5D3BD02 Reverse transcriptase1.1e-46100Show/hide
Query:  MPLAQSLVVRRSNPRVVQAKIKQWGENEKSPARLSPLAIPFLDEQIEAGSVPVEIQEVLNEYVDIMPRRPCPRGIDHEIELVPGAKPPAQNAYRMA
        MPLAQSLVVRRSNPRVVQAKIKQWGENEKSPARLSPLAIPFLDEQIEAGSVPVEIQEVLNEYVDIMPRRPCPRGIDHEIELVPGAKPPAQNAYRMA
Subjt:  MPLAQSLVVRRSNPRVVQAKIKQWGENEKSPARLSPLAIPFLDEQIEAGSVPVEIQEVLNEYVDIMPRRPCPRGIDHEIELVPGAKPPAQNAYRMA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGAGACCTCGTACTTGGGATTTCCTCTTGGAAGATCAATCCCCATGCCATTGGCTCAGTCTCTGGTAGTAAGGAGGAGTAATCCGAGAGTGGTTCAAGCTAAGAT
CAAGCAATGGGGTGAGAATGAGAAAAGCCCTGCAAGGCTCAGCCCACTGGCTATCCCCTTCTTGGATGAGCAAATTGAAGCTGGGTCTGTCCCAGTAGAGATCCAGGAAG
TTCTGAATGAGTACGTTGATATAATGCCGCGAAGACCTTGCCCACGTGGGATTGATCATGAGATTGAACTTGTCCCAGGAGCCAAACCCCCAGCTCAAAATGCCTACCGA
ATGGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATGAGACCTCGTACTTGGGATTTCCTCTTGGAAGATCAATCCCCATGCCATTGGCTCAGTCTCTGGTAGTAAGGAGGAGTAATCCGAGAGTGGTTCAAGCTAAGAT
CAAGCAATGGGGTGAGAATGAGAAAAGCCCTGCAAGGCTCAGCCCACTGGCTATCCCCTTCTTGGATGAGCAAATTGAAGCTGGGTCTGTCCCAGTAGAGATCCAGGAAG
TTCTGAATGAGTACGTTGATATAATGCCGCGAAGACCTTGCCCACGTGGGATTGATCATGAGATTGAACTTGTCCCAGGAGCCAAACCCCCAGCTCAAAATGCCTACCGA
ATGGCTTAG
Protein sequenceShow/hide protein sequence
MDETSYLGFPLGRSIPMPLAQSLVVRRSNPRVVQAKIKQWGENEKSPARLSPLAIPFLDEQIEAGSVPVEIQEVLNEYVDIMPRRPCPRGIDHEIELVPGAKPPAQNAYR
MA