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IVF0023466 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0023466
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass, expressed
Genome locationchr11:24432366..24433467
RNA-Seq ExpressionIVF0023466
SyntenyIVF0023466
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051945.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]7.50e-1970.37Show/hide
Query:  PSTISLFCIGHKCFKLWDSYFEDFILHSWHHPSHIFPKYKSGSELVGRRTKVQP
        PST+ LF IGHKCF+LWDSYFE+F LHSWH PSHI+ KY+SGSEL GR+ +  P
Subjt:  PSTISLFCIGHKCFKLWDSYFEDFILHSWHHPSHIFPKYKSGSELVGRRTKVQP

KAA0057641.1 hypothetical protein E6C27_scaffold43054G00020 [Cucumis melo var. makuwa]9.60e-1644.88Show/hide
Query:  ENAFQRRKRTKLKSFWCSFQKNVNDNAPDSIFQSRSKKQSFNGFFLLYCSPSTISLFCIGHKCFKLWDSYFEDFILHSWHHPSHIFPKYKSGSELVGRRT
        E   QRRK+T+LK FWCS Q+N +DNAPDS F S  KK+S  GFF          L  IGHK F L  SY+EDF  HSWH            S L G   
Subjt:  ENAFQRRKRTKLKSFWCSFQKNVNDNAPDSIFQSRSKKQSFNGFFLLYCSPSTISLFCIGHKCFKLWDSYFEDFILHSWHHPSHIFPKYKSGSELVGRRT

Query:  KVQPKTIEKMANALPTSGEHLFSVKNH
          Q  +  K    LPTSGE    ++NH
Subjt:  KVQPKTIEKMANALPTSGEHLFSVKNH

KAA0062888.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]5.78e-1450Show/hide
Query:  FQRVVNARSMSEATENAFQRRKRTKLKSFWCSFQKNVNDNAPDSIFQSRSKKQSFNGFFLLYCSPSTISLFCIGHKCFKLWDSYFEDFILHSWHHP
        FQRV NAR +SE T NA   +KR +LK FWCS Q+N  +N  DS+F S  KKQS +GFF L           IGHK      SY EDF  +SWH P
Subjt:  FQRVVNARSMSEATENAFQRRKRTKLKSFWCSFQKNVNDNAPDSIFQSRSKKQSFNGFFLLYCSPSTISLFCIGHKCFKLWDSYFEDFILHSWHHP

KAA0065520.1 retrotransposon protein, putative, Ty3-gypsy subclass, expressed [Cucumis melo var. makuwa]4.02e-3756.12Show/hide
Query:  MLFQRVVNARSMSEATENAFQRRKRTKLKSFWCSFQKNVNDNAPDSIFQSRSKKQSFNGFFLLYCSPSTISLFCIGHKCFKLWDSYFEDFILHSWHHPSH
        +LFQRV NAR +S   ++AFQ+ K  KLK+FWCS Q++ ++NAPDS+F S  KK+S +GF +L C         +GHK F+L DSY EDF LHSW  PS 
Subjt:  MLFQRVVNARSMSEATENAFQRRKRTKLKSFWCSFQKNVNDNAPDSIFQSRSKKQSFNGFFLLYCSPSTISLFCIGHKCFKLWDSYFEDFILHSWHHPSH

Query:  IFPKYKSGSELVGRRTKVQPKTIEKMANALPTSGEHLFS
        +F KY++GS+LV  RTKVQ  TIEKMAN LPTSG+ L S
Subjt:  IFPKYKSGSELVGRRTKVQPKTIEKMANALPTSGEHLFS

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]1.12e-1479.17Show/hide
Query:  EDFILHSWHHPSHIFPKYKSGSELVGRRTKVQPKTIEKMANALPTSGE
        +DF LH WHH S IFP+Y+SGSELVGRRTKVQ  TIEK+ANALPTSGE
Subjt:  EDFILHSWHHPSHIFPKYKSGSELVGRRTKVQPKTIEKMANALPTSGE

TrEMBL top hitse value%identityAlignment
A0A5A7UVV0 Uncharacterized protein2.0e-1344.88Show/hide
Query:  ENAFQRRKRTKLKSFWCSFQKNVNDNAPDSIFQSRSKKQSFNGFFLLYCSPSTISLFCIGHKCFKLWDSYFEDFILHSWHHPSHIFPKYKSGSELVGRRT
        E   QRRK+T+LK FWCS Q+N +DNAPDS F S  KK+S  GFF          L  IGHK F L  SY+EDF  HSWH            S L G   
Subjt:  ENAFQRRKRTKLKSFWCSFQKNVNDNAPDSIFQSRSKKQSFNGFFLLYCSPSTISLFCIGHKCFKLWDSYFEDFILHSWHHPSHIFPKYKSGSELVGRRT

Query:  KVQPKTIEKMANALPTSGEHLFSVKNH
          Q  +  K    LPTSGE    ++NH
Subjt:  KVQPKTIEKMANALPTSGEHLFSVKNH

A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein6.3e-1250Show/hide
Query:  FQRVVNARSMSEATENAFQRRKRTKLKSFWCSFQKNVNDNAPDSIFQSRSKKQSFNGFFLLYCSPSTISLFCIGHKCFKLWDSYFEDFILHSWHHP
        FQRV NAR +SE T NA   +KR +LK FWCS Q+N  +N  DS+F S  KKQS +GFF          L  IGHK      SY EDF  +SWH P
Subjt:  FQRVVNARSMSEATENAFQRRKRTKLKSFWCSFQKNVNDNAPDSIFQSRSKKQSFNGFFLLYCSPSTISLFCIGHKCFKLWDSYFEDFILHSWHHP

A0A5A7VEB1 Retrotransposon protein, putative, Ty3-gypsy subclass, expressed7.2e-3256.12Show/hide
Query:  MLFQRVVNARSMSEATENAFQRRKRTKLKSFWCSFQKNVNDNAPDSIFQSRSKKQSFNGFFLLYCSPSTISLFCIGHKCFKLWDSYFEDFILHSWHHPSH
        +LFQRV NAR +S   ++AFQ+ K  KLK+FWCS Q++ ++NAPDS+F S  KK+S +GF +         L C+GHK F+L DSY EDF LHSW  PS 
Subjt:  MLFQRVVNARSMSEATENAFQRRKRTKLKSFWCSFQKNVNDNAPDSIFQSRSKKQSFNGFFLLYCSPSTISLFCIGHKCFKLWDSYFEDFILHSWHHPSH

Query:  IFPKYKSGSELVGRRTKVQPKTIEKMANALPTSGEHLFS
        +F KY++GS+LV  RTKVQ  TIEKMAN LPTSG+ L S
Subjt:  IFPKYKSGSELVGRRTKVQPKTIEKMANALPTSGEHLFS

A0A5D3BG85 Uncharacterized protein1.7e-1279.17Show/hide
Query:  EDFILHSWHHPSHIFPKYKSGSELVGRRTKVQPKTIEKMANALPTSGE
        +DF LH WHH S IFP+Y+SGSELVGRRTKVQ  TIEK+ANALPTSGE
Subjt:  EDFILHSWHHPSHIFPKYKSGSELVGRRTKVQPKTIEKMANALPTSGE

A0A5D3CKZ2 Pentatricopeptide repeat-containing protein1.8e-1470.37Show/hide
Query:  PSTISLFCIGHKCFKLWDSYFEDFILHSWHHPSHIFPKYKSGSELVGRRTKVQP
        PST+ LF IGHKCF+LWDSYFE+F LHSWH PSHI+ KY+SGSEL GR+ +  P
Subjt:  PSTISLFCIGHKCFKLWDSYFEDFILHSWHHPSHIFPKYKSGSELVGRRTKVQP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCTTCCAACGAGTGGTGAACGCTCGTTCAATGTCAGAAGCCACTGAAAATGCATTTCAGCGAAGGAAACGAACTAAGCTCAAGAGCTTCTGGTGTTCGTTCCAAAA
AAATGTGAACGACAATGCCCCAGACTCAATTTTTCAATCTCGGAGTAAAAAGCAGTCCTTCAACGGTTTCTTTCTTTTGTATTGTAGTCCTTCAACGATTTCTTTGTTTT
GTATTGGTCATAAGTGTTTCAAGCTTTGGGACTCGTACTTTGAGGACTTCATTCTACATTCTTGGCATCATCCCTCACACATTTTCCCAAAGTATAAGTCGGGAAGCGAG
CTCGTTGGAAGGAGAACTAAGGTGCAACCCAAAACGATCGAAAAGATGGCCAATGCTCTTCCGACGAGTGGCGAACACTTGTTCAGTGTCAAAAACCACTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTCTTCCAACGAGTGGTGAACGCTCGTTCAATGTCAGAAGCCACTGAAAATGCATTTCAGCGAAGGAAACGAACTAAGCTCAAGAGCTTCTGGTGTTCGTTCCAAAA
AAATGTGAACGACAATGCCCCAGACTCAATTTTTCAATCTCGGAGTAAAAAGCAGTCCTTCAACGGTTTCTTTCTTTTGTATTGTAGTCCTTCAACGATTTCTTTGTTTT
GTATTGGTCATAAGTGTTTCAAGCTTTGGGACTCGTACTTTGAGGACTTCATTCTACATTCTTGGCATCATCCCTCACACATTTTCCCAAAGTATAAGTCGGGAAGCGAG
CTCGTTGGAAGGAGAACTAAGGTGCAACCCAAAACGATCGAAAAGATGGCCAATGCTCTTCCGACGAGTGGCGAACACTTGTTCAGTGTCAAAAACCACTGA
Protein sequenceShow/hide protein sequence
MLFQRVVNARSMSEATENAFQRRKRTKLKSFWCSFQKNVNDNAPDSIFQSRSKKQSFNGFFLLYCSPSTISLFCIGHKCFKLWDSYFEDFILHSWHHPSHIFPKYKSGSE
LVGRRTKVQPKTIEKMANALPTSGEHLFSVKNH