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IVF0023477 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0023477
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Genome locationchr08:24557150..24557428
RNA-Seq ExpressionIVF0023477
SyntenyIVF0023477
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061317.1 hypothetical protein E6C27_scaffold6213G00130 [Cucumis melo var. makuwa]1.81e-2665.22Show/hide
Query:  MPRTQFSRPGVRSSPPTVSSLSFVLVISLSIFGARTPRTSTDTFGMLSDMVSQGIGRKASSLEGELRCDLKRSKTWPMLPASGGRSSGVRNH
        MPRTQFSR   +  P        VLVISLSIF ART RTST T GML  M +QGIGR+ASSLEGEL  D KR K WPML  SG R SGVRNH
Subjt:  MPRTQFSRPGVRSSPPTVSSLSFVLVISLSIFGARTPRTSTDTFGMLSDMVSQGIGRKASSLEGELRCDLKRSKTWPMLPASGGRSSGVRNH

KAA0062888.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]3.76e-3372.83Show/hide
Query:  MPRTQFSRPGVRSSPPTVSSLSFVLVISLSIFGARTPRTSTDTFGMLSDMVSQGIGRKASSLEGELRCDLKRSKTWPMLPASGGRSSGVRNH
        MPR+QFSR G +S  PTVSSL FVLVI+LSIF ARTPRTST T GML DM S+GIG++ASSLEGEL C+ KRSK W MLP S  RSSG+RNH
Subjt:  MPRTQFSRPGVRSSPPTVSSLSFVLVISLSIFGARTPRTSTDTFGMLSDMVSQGIGRKASSLEGELRCDLKRSKTWPMLPASGGRSSGVRNH

TYK15439.1 uncharacterized protein E5676_scaffold477G00010 [Cucumis melo var. makuwa]2.22e-2971.95Show/hide
Query:  VRSSPPTVSSLSFVLVISLSIFGARTPRTSTDTFGMLSDMVSQGIGRKASSLEGELRCDLKRSKTWPMLPASGGRSSGVRNH
        V+S PPTVSS+  VLVI LSIFGA  PRTST T GML DM S GI R+A SLEGEL CD KRS+ WPMLP SG RSS VRNH
Subjt:  VRSSPPTVSSLSFVLVISLSIFGARTPRTSTDTFGMLSDMVSQGIGRKASSLEGELRCDLKRSKTWPMLPASGGRSSGVRNH

TYK22521.1 uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa]2.32e-2547.95Show/hide
Query:  MPRTQFSRPGVRSSPPTVSSLSFVLVISLSIFGARTPRTST-------DTF-----------------------------------------------GM
        MP+TQFSRPG +S PPTVS+L  VLV SLSIFGA TPRTST       DTF                                               GM
Subjt:  MPRTQFSRPGVRSSPPTVSSLSFVLVISLSIFGARTPRTST-------DTF-----------------------------------------------GM

Query:  LSDMVSQGIGRKASSLEGELRCDLKRSKTWPMLPASGGRSSGVRNH
        L D  S GIGR+ASSLEGEL CD K SK WPMLP  G RSSG RNH
Subjt:  LSDMVSQGIGRKASSLEGELRCDLKRSKTWPMLPASGGRSSGVRNH

TYK23424.1 gag/pol protein [Cucumis melo var. makuwa]4.59e-2575Show/hide
Query:  TVSSLSFVLVISLSIFGARTPRTSTDTFGMLSDMVSQGIGRKASSLEGELRCDLKRSKTWPMLPASGGRSSGVRNH
        TVSSL F+LVISL IFGA TPRTST T  ML DM SQGIGR+ASSLEGELRCD K  K WPML  SG  SSGVRN+
Subjt:  TVSSLSFVLVISLSIFGARTPRTSTDTFGMLSDMVSQGIGRKASSLEGELRCDLKRSKTWPMLPASGGRSSGVRNH

TrEMBL top hitse value%identityAlignment
A0A5A7V368 Uncharacterized protein1.2e-1965.22Show/hide
Query:  MPRTQFSRPGVRSSPPTVSSLSFVLVISLSIFGARTPRTSTDTFGMLSDMVSQGIGRKASSLEGELRCDLKRSKTWPMLPASGGRSSGVRNH
        MPRTQFSR   +  P        VLVISLSIF ART RTST T GML  M +QGIGR+ASSLEGEL  D KR K WPML  SG R SGVRNH
Subjt:  MPRTQFSRPGVRSSPPTVSSLSFVLVISLSIFGARTPRTSTDTFGMLSDMVSQGIGRKASSLEGELRCDLKRSKTWPMLPASGGRSSGVRNH

A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein7.6e-2772.83Show/hide
Query:  MPRTQFSRPGVRSSPPTVSSLSFVLVISLSIFGARTPRTSTDTFGMLSDMVSQGIGRKASSLEGELRCDLKRSKTWPMLPASGGRSSGVRNH
        MPR+QFSR G +S  PTVSSL FVLVI+LSIF ARTPRTST T GML DM S+GIG++ASSLEGEL C+ KRSK W MLP S  RSSG+RNH
Subjt:  MPRTQFSRPGVRSSPPTVSSLSFVLVISLSIFGARTPRTSTDTFGMLSDMVSQGIGRKASSLEGELRCDLKRSKTWPMLPASGGRSSGVRNH

A0A5D3CZ27 ULP_PROTEASE domain-containing protein1.6e-2171.95Show/hide
Query:  VRSSPPTVSSLSFVLVISLSIFGARTPRTSTDTFGMLSDMVSQGIGRKASSLEGELRCDLKRSKTWPMLPASGGRSSGVRNH
        V+S PPTVSS+  VLVI LSIFGA  PRTST T GML DM S GI R+A SLEGEL CD KRS+ WPMLP SG RSS VRNH
Subjt:  VRSSPPTVSSLSFVLVISLSIFGARTPRTSTDTFGMLSDMVSQGIGRKASSLEGELRCDLKRSKTWPMLPASGGRSSGVRNH

A0A5D3DFP2 Uncharacterized protein4.1e-2047.95Show/hide
Query:  MPRTQFSRPGVRSSPPTVSSLSFVLVISLSIFGARTPRTST-------DTF-----------------------------------------------GM
        MP+TQFSRPG +S PPTVS+L  VLV SLSIFGA TPRTST       DTF                                               GM
Subjt:  MPRTQFSRPGVRSSPPTVSSLSFVLVISLSIFGARTPRTST-------DTF-----------------------------------------------GM

Query:  LSDMVSQGIGRKASSLEGELRCDLKRSKTWPMLPASGGRSSGVRNH
        L D  S GIGR+ASSLEGEL CD K SK WPMLP  G RSSG RNH
Subjt:  LSDMVSQGIGRKASSLEGELRCDLKRSKTWPMLPASGGRSSGVRNH

A0A5D3DIF8 Gag/pol protein6.9e-2075Show/hide
Query:  TVSSLSFVLVISLSIFGARTPRTSTDTFGMLSDMVSQGIGRKASSLEGELRCDLKRSKTWPMLPASGGRSSGVRNH
        TVSSL F+LVISL IFGA TPRTST T  ML DM SQGIGR+ASSLEGELRCD K  K WPML  SG  SSGVRN+
Subjt:  TVSSLSFVLVISLSIFGARTPRTSTDTFGMLSDMVSQGIGRKASSLEGELRCDLKRSKTWPMLPASGGRSSGVRNH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCCGGACTCAGTTTTCTCGTCCTGGGGTAAGAAGCAGTCCTCCGACGGTTTCTTCCCTTTCCTTCGTATTGGTCATAAGTCTTTCGATCTTCGGGGCTCGTACTCC
GAGGACCTCAACCGACACTTTTGGCATGCTCTCTGACATGGTTTCCCAAGGTATAGGTCGGAAAGCGAGCTCATTGGAGGGAGAACTAAGGTGCGACCTAAAACGGTCCA
AAACGTGGCCAATGCTTCCAGCGAGCGGCGGACGCTCGTCTGGTGTCAGAAACCACTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCCCGGACTCAGTTTTCTCGTCCTGGGGTAAGAAGCAGTCCTCCGACGGTTTCTTCCCTTTCCTTCGTATTGGTCATAAGTCTTTCGATCTTCGGGGCTCGTACTCC
GAGGACCTCAACCGACACTTTTGGCATGCTCTCTGACATGGTTTCCCAAGGTATAGGTCGGAAAGCGAGCTCATTGGAGGGAGAACTAAGGTGCGACCTAAAACGGTCCA
AAACGTGGCCAATGCTTCCAGCGAGCGGCGGACGCTCGTCTGGTGTCAGAAACCACTAG
Protein sequenceShow/hide protein sequence
MPRTQFSRPGVRSSPPTVSSLSFVLVISLSIFGARTPRTSTDTFGMLSDMVSQGIGRKASSLEGELRCDLKRSKTWPMLPASGGRSSGVRNH