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IVF0023508 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0023508
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description50S ribosomal protein L23
Genome locationchr07:11867462..11867986
RNA-Seq ExpressionIVF0023508
SyntenyIVF0023508
Gene Ontology termsGO:0032543 - mitochondrial translation (biological process)
GO:0005762 - mitochondrial large ribosomal subunit (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR012678 - Ribosomal protein L23/L15e core domain superfamily
IPR013025 - Ribosomal protein L25/L23


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0053397.1 Nucleotide-binding, alpha-beta plait [Cucumis melo var. makuwa]1.77e-11599.43Show/hide
Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYP
        MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKT PSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR

TYK15876.1 Nucleotide-binding, alpha-beta plait [Cucumis melo var. makuwa]3.06e-116100Show/hide
Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYP
        MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR

XP_004137193.1 uncharacterized protein LOC101221365 [Cucumis sativus]5.00e-11497.13Show/hide
Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYP
        MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGF+VDKV+TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSIS DMYP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR
        IRIIEEDKRNMNKQSKSSIVEEGEAK+HWLHEKEPVGIKTYKGFADRGRRR GGGAETVEPSTKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR

XP_008455593.1 PREDICTED: uncharacterized protein LOC103495731 isoform X1 [Cucumis melo]2.21e-117100Show/hide
Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYP
        MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR

XP_016901794.1 PREDICTED: uncharacterized protein LOC103495731 isoform X2 [Cucumis melo]1.28e-116100Show/hide
Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYP
        MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSG
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSG
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSG

TrEMBL top hitse value%identityAlignment
A0A0A0L0J2 Uncharacterized protein1.7e-8897.13Show/hide
Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYP
        MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGF+VDKV+TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSIS DMYP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR
        IRIIEEDKRNMNKQSKSSIVEEGEAK+HWLHEKEPVGIKTYKGFADRGRRR GGGAETVEPSTKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR

A0A1S3C191 uncharacterized protein LOC103495731 isoform X14.9e-91100Show/hide
Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYP
        MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR

A0A1S4E0P8 uncharacterized protein LOC103495731 isoform X21.9e-90100Show/hide
Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYP
        MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSG
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSG
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSG

A0A5A7UFX6 Nucleotide-binding, alpha-beta plait1.9e-9099.43Show/hide
Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYP
        MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKT PSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR

A0A5D3CZJ7 Nucleotide-binding, alpha-beta plait4.9e-91100Show/hide
Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYP
        MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR

SwissProt top hitse value%identityAlignment
A1WVC0 50S ribosomal protein L232.7e-0645.76Show/hide
Query:  EIALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDYKKAYVTL
        ++  +  P A+K EIK  +E L+  QV  VRT+N +GK+K+ G I   + D+KKAYVTL
Subjt:  EIALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDYKKAYVTL

P55839 50S ribosomal protein L233.6e-0642.19Show/hide
Query:  IALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSI
        I  K    A+K+EI   +E L+  +VD VRT+ ++GK K+RG  +  + D+KKAYVTL+   S+
Subjt:  IALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSI

Q0ABH3 50S ribosomal protein L232.7e-0644.07Show/hide
Query:  EIALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDYKKAYVTL
        E+  K    A K EI++ +E L+  +V  VRT+ M+GK+K+ G +   +PD+KKAYVTL
Subjt:  EIALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDYKKAYVTL

Q0I161 50S ribosomal protein L231.6e-0642.47Show/hide
Query:  TNITE----IALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSI
        TN TE    I  K    A+K+EI   +E L+  +VD VRT+ ++GK K+RG  +  + D+KKAYVTL+   S+
Subjt:  TNITE----IALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSI

Q605B4 50S ribosomal protein L239.4e-0741.67Show/hide
Query:  EIALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDYKKAYVTLR
        +   +  P+ASK++IK  +E ++G +VD VR LN++GK K+ G  +  + D+KKAYV L+
Subjt:  EIALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDYKKAYVTLR

Arabidopsis top hitse value%identityAlignment
AT4G39880.1 Ribosomal protein L23/L15e family protein1.0e-5365.14Show/hide
Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYP
        MGSRLG RVVHFANLPIKLLMP   TNI E ALKTIPSASKIEIKRVLESLYGF V+KV TLNM+GKKKKRGG+LIAK DYKKAYVTLR+PLSIS+D++P
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGIKTY-KGFADRGRRRIGG---GAETVEPSTKFPWSSMR
        ++ IEED+++  K S S + EE + K HWL  KE   I  Y KG   RG  R      G      + KFPWS+MR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGIKTY-KGFADRGRRRIGG---GAETVEPSTKFPWSSMR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAGCAGACTCGGGAGAAGAGTTGTTCACTTCGCAAATCTTCCAATCAAGCTTCTTATGCCTACCTCCTTCACCAACATCACTGAAATTGCTCTTAAAACCATTCC
TTCTGCTTCTAAAATTGAAATCAAGCGCGTCCTTGAGAGCCTTTACGGCTTTCAGGTCGATAAAGTTCGAACTCTTAACATGGAGGGGAAGAAAAAGAAGCGTGGAGGGA
TTTTGATCGCAAAGCCTGATTACAAGAAGGCCTATGTTACTCTCAGAAATCCTTTGTCAATCTCTCAGGACATGTACCCGATCCGCATTATAGAGGAGGATAAGAGGAAT
ATGAACAAACAGTCTAAGTCCAGCATTGTTGAGGAGGGCGAGGCAAAGAGGCATTGGCTGCATGAGAAAGAGCCTGTGGGAATCAAAACTTACAAGGGTTTTGCTGATAG
AGGCCGCCGACGAATTGGCGGCGGCGCTGAAACGGTTGAGCCATCAACTAAGTTTCCTTGGAGTAGCATGAGGTCTGGTAGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAAGCAGACTCGGGAGAAGAGTTGTTCACTTCGCAAATCTTCCAATCAAGCTTCTTATGCCTACCTCCTTCACCAACATCACTGAAATTGCTCTTAAAACCATTCC
TTCTGCTTCTAAAATTGAAATCAAGCGCGTCCTTGAGAGCCTTTACGGCTTTCAGGTCGATAAAGTTCGAACTCTTAACATGGAGGGGAAGAAAAAGAAGCGTGGAGGGA
TTTTGATCGCAAAGCCTGATTACAAGAAGGCCTATGTTACTCTCAGAAATCCTTTGTCAATCTCTCAGGACATGTACCCGATCCGCATTATAGAGGAGGATAAGAGGAAT
ATGAACAAACAGTCTAAGTCCAGCATTGTTGAGGAGGGCGAGGCAAAGAGGCATTGGCTGCATGAGAAAGAGCCTGTGGGAATCAAAACTTACAAGGGTTTTGCTGATAG
AGGCCGCCGACGAATTGGCGGCGGCGCTGAAACGGTTGAGCCATCAACTAAGTTTCCTTGGAGTAGCATGAGGTCTGGTAGGTAG
Protein sequenceShow/hide protein sequence
MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRN
MNKQSKSSIVEEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR