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IVF0023535 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0023535
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRNA-directed DNA polymerase
Genome locationchr06:3785156..3785640
RNA-Seq ExpressionIVF0023535
SyntenyIVF0023535
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039087.1 putative protein phosphatase 2C 25 [Cucumis melo var. makuwa]1.97e-6298Show/hide
Query:  IDSYSKLKPRKIGPYKILRKIDANAYVLDLLPLIYTSSTFNVSDLTMYHLPDAAPTIEESEDEKFGMKSDHTDSLIGNIVTTDVDQTNLFPVAMLNNEVD
        + SYSKLKPRKIGPYKILRKIDANAYVLDLLPLIYTSSTFNVSDLTMYHLPDAAPTIEESEDEKFGMKSDHTDSLIGNIVTTDVDQTNLFPVAMLNNEVD
Subjt:  IDSYSKLKPRKIGPYKILRKIDANAYVLDLLPLIYTSSTFNVSDLTMYHLPDAAPTIEESEDEKFGMKSDHTDSLIGNIVTTDVDQTNLFPVAMLNNEVD

KGN61529.1 hypothetical protein Csa_006553 [Cucumis sativus]2.55e-3158.62Show/hide
Query:  MCRKANTMSELKISSISSIDSYSKLKPRKIGPYKILRKIDANAYVLDLLPLIYTSSTFNVSDLTMYHLPDAAPTIEESEDEKFGMKSDHTDSLIGNIVTT
        MC+KANTMS+    +I +I   SKLKP+++G   ILRKI  NAYVLDL   IYTSSTFNV +LTMYH  D APTI++ E+EKF  KSD  +S +GNI+T 
Subjt:  MCRKANTMSELKISSISSIDSYSKLKPRKIGPYKILRKIDANAYVLDLLPLIYTSSTFNVSDLTMYHLPDAAPTIEESEDEKFGMKSDHTDSLIGNIVTT

Query:  DVDQTNLFPVAMLNNE
        D + T L PVAML  E
Subjt:  DVDQTNLFPVAMLNNE

PKU64118.1 hypothetical protein MA16_Dca008024 [Dendrobium catenatum]6.04e-1465.52Show/hide
Query:  SYSKLKPRKIGPYKILRKIDANAYVLDLLPLIYTSSTFNVSDLTMYHLPDAAPTIEES
        +YSKL P+KIGP+ ILRKI+ NAY++DL   I TSSTFNVSD+  YH PDAA TI  S
Subjt:  SYSKLKPRKIGPYKILRKIDANAYVLDLLPLIYTSSTFNVSDLTMYHLPDAAPTIEES

PKU74262.1 hypothetical protein MA16_Dca003465 [Dendrobium catenatum]1.31e-1463.33Show/hide
Query:  SYSKLKPRKIGPYKILRKIDANAYVLDLLPLIYTSSTFNVSDLTMYHLPDAAPTIEESED
        SYSKL PRKIGP+ ILR+I+ N YV+DL     TS+TFN+SDL+ YH PDAAPT   S D
Subjt:  SYSKLKPRKIGPYKILRKIDANAYVLDLLPLIYTSSTFNVSDLTMYHLPDAAPTIEESED

PKU75814.1 hypothetical protein MA16_Dca018315 [Dendrobium catenatum]8.87e-1454.79Show/hide
Query:  SKLKPRKIGPYKILRKIDANAYVLDLLPLIYTSSTFNVSDLTMYHLPDAAPTIEESEDEKFGMKSDHTDSLIG
        SKL PRKIGP+ +L++I+ NAYV+DL     TSSTFN+ DLT+YH PDAAPT   S D         +DSL+G
Subjt:  SKLKPRKIGPYKILRKIDANAYVLDLLPLIYTSSTFNVSDLTMYHLPDAAPTIEESEDEKFGMKSDHTDSLIG

TrEMBL top hitse value%identityAlignment
A0A0A0LKH8 Uncharacterized protein3.0e-2358.62Show/hide
Query:  MCRKANTMSELKISSISSIDSYSKLKPRKIGPYKILRKIDANAYVLDLLPLIYTSSTFNVSDLTMYHLPDAAPTIEESEDEKFGMKSDHTDSLIGNIVTT
        MC+KANTMS+    +I +I   SKLKP+++G   ILRKI  NAYVLDL   IYTSSTFNV +LTMYH  D APTI++ E+EKF  KSD  +S +GNI+T 
Subjt:  MCRKANTMSELKISSISSIDSYSKLKPRKIGPYKILRKIDANAYVLDLLPLIYTSSTFNVSDLTMYHLPDAAPTIEESEDEKFGMKSDHTDSLIGNIVTT

Query:  DVDQTNLFPVAMLNNE
        D + T L PVAML  E
Subjt:  DVDQTNLFPVAMLNNE

A0A2I0VL32 Integrase catalytic domain-containing protein9.8e-1163.33Show/hide
Query:  SYSKLKPRKIGPYKILRKIDANAYVLDLLPLIYTSSTFNVSDLTMYHLPDAAPTIEESED
        +YSKL P+KIGP+ ILRKI+ NAY++DL   I TSSTFNVSD+  YH PDAA TI  S +
Subjt:  SYSKLKPRKIGPYKILRKIDANAYVLDLLPLIYTSSTFNVSDLTMYHLPDAAPTIEESED

A0A2I0WF49 Uncharacterized protein1.3e-1063.33Show/hide
Query:  SYSKLKPRKIGPYKILRKIDANAYVLDLLPLIYTSSTFNVSDLTMYHLPDAAPTIEESED
        SYSKL PRKIGP+ ILR+I+ N YV+DL     TS+TFN+SDL+ YH PDAAPT   S D
Subjt:  SYSKLKPRKIGPYKILRKIDANAYVLDLLPLIYTSSTFNVSDLTMYHLPDAAPTIEESED

A0A2I0WJI0 Uncharacterized protein2.2e-1053.42Show/hide
Query:  SKLKPRKIGPYKILRKIDANAYVLDLLPLIYTSSTFNVSDLTMYHLPDAAPTIEESEDEKFGMKSDHTDSLIG
        SKL PRKIGP+ +L++I+ NAYV+DL     TSSTFN+ DLT+YH PDAAPT          + S  +DSL+G
Subjt:  SKLKPRKIGPYKILRKIDANAYVLDLLPLIYTSSTFNVSDLTMYHLPDAAPTIEESEDEKFGMKSDHTDSLIG

A0A5D3CWR3 Uncharacterized protein6.5e-4798Show/hide
Query:  IDSYSKLKPRKIGPYKILRKIDANAYVLDLLPLIYTSSTFNVSDLTMYHLPDAAPTIEESEDEKFGMKSDHTDSLIGNIVTTDVDQTNLFPVAMLNNEVD
        + SYSKLKPRKIGPYKILRKIDANAYVLDLLPLIYTSSTFNVSDLTMYHLPDAAPTIEESEDEKFGMKSDHTDSLIGNIVTTDVDQTNLFPVAMLNNEVD
Subjt:  IDSYSKLKPRKIGPYKILRKIDANAYVLDLLPLIYTSSTFNVSDLTMYHLPDAAPTIEESEDEKFGMKSDHTDSLIGNIVTTDVDQTNLFPVAMLNNEVD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCAGAAAAGCTAACACAATGTCTGAACTGAAGATATCATCAATATCATCGATAGATTCGTATTCCAAGCTGAAACCACGAAAAATTGGTCCTTACAAAATATTGCG
AAAAATTGATGCTAATGCTTATGTTTTGGACTTACTGCCATTAATCTACACATCCTCTACCTTTAATGTTTCAGATCTGACTATGTACCATCTGCCAGATGCTGCACCGA
CGATTGAAGAATCTGAAGATGAGAAGTTTGGCATGAAATCGGACCACACAGACTCCTTAATCGGGAACATTGTGACCACAGATGTCGACCAAACTAATTTGTTTCCGGTC
GCTATGTTGAACAATGAAGTTGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGCAGAAAAGCTAACACAATGTCTGAACTGAAGATATCATCAATATCATCGATAGATTCGTATTCCAAGCTGAAACCACGAAAAATTGGTCCTTACAAAATATTGCG
AAAAATTGATGCTAATGCTTATGTTTTGGACTTACTGCCATTAATCTACACATCCTCTACCTTTAATGTTTCAGATCTGACTATGTACCATCTGCCAGATGCTGCACCGA
CGATTGAAGAATCTGAAGATGAGAAGTTTGGCATGAAATCGGACCACACAGACTCCTTAATCGGGAACATTGTGACCACAGATGTCGACCAAACTAATTTGTTTCCGGTC
GCTATGTTGAACAATGAAGTTGATTGA
Protein sequenceShow/hide protein sequence
MCRKANTMSELKISSISSIDSYSKLKPRKIGPYKILRKIDANAYVLDLLPLIYTSSTFNVSDLTMYHLPDAAPTIEESEDEKFGMKSDHTDSLIGNIVTTDVDQTNLFPV
AMLNNEVD